Wall clock time and date at job start Tue Mar 31 2020 06:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21277 * 120.00200 * 2 1 4 4 N 1.34777 * 120.00070 * 180.02562 * 2 1 3 5 5 C 1.46502 * 120.00014 * 179.97438 * 4 2 1 6 6 H 1.08994 * 109.46988 * 325.00304 * 5 4 2 7 7 C 1.50705 * 109.47002 * 204.99812 * 5 4 2 8 8 O 1.21278 * 119.99968 * 335.20284 * 7 5 4 9 9 N 1.34773 * 119.99570 * 155.47741 * 7 5 4 10 10 C 1.46505 * 119.99842 * 183.72049 * 9 7 5 11 11 C 1.52994 * 109.47096 * 185.14722 * 10 9 7 12 12 C 1.50705 * 115.55468 * 304.60998 * 11 10 9 13 13 H 1.07992 * 120.00191 * 144.11466 * 12 11 10 14 14 C 1.37876 * 119.99430 * 324.12220 * 12 11 10 15 15 N 1.31511 * 119.99859 * 167.83942 * 14 12 11 16 16 Si 1.86800 * 120.00253 * 347.83291 * 14 12 11 17 17 H 1.48503 * 109.47040 * 95.74834 * 16 14 12 18 18 H 1.48504 * 109.47015 * 215.74784 * 16 14 12 19 19 H 1.48499 * 109.47257 * 335.75019 * 16 14 12 20 20 C 1.53000 * 117.50029 * 158.93678 * 11 10 9 21 21 C 1.53005 * 117.49562 * 90.27998 * 11 10 9 22 22 C 1.52999 * 109.46745 * 85.00012 * 5 4 2 23 23 C 1.52999 * 109.46679 * 183.90593 * 22 5 4 24 24 C 1.52998 * 109.47545 * 303.90919 * 22 5 4 25 25 H 1.09002 * 109.47292 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47656 * 299.99516 * 1 2 3 27 27 H 1.09003 * 109.47374 * 59.99771 * 1 2 3 28 28 H 0.97010 * 119.99907 * 359.97438 * 4 2 1 29 29 H 0.97002 * 120.00394 * 3.72288 * 9 7 5 30 30 H 1.08996 * 109.47094 * 305.14990 * 10 9 7 31 31 H 1.09003 * 109.46910 * 65.15006 * 10 9 7 32 32 H 0.96997 * 120.00614 * 179.97438 * 15 14 12 33 33 H 1.09004 * 117.49351 * 0.02562 * 20 11 10 34 34 H 1.08997 * 117.50318 * 145.01964 * 20 11 10 35 35 H 1.09009 * 117.49769 * 214.97773 * 21 11 10 36 36 H 1.08998 * 117.50360 * 359.97438 * 21 11 10 37 37 H 1.09004 * 109.47574 * 63.91328 * 22 5 4 38 38 H 1.08997 * 109.47363 * 52.53792 * 23 22 5 39 39 H 1.09001 * 109.47302 * 172.53142 * 23 22 5 40 40 H 1.09006 * 109.47777 * 292.53090 * 23 22 5 41 41 H 1.09001 * 109.46738 * 60.00138 * 24 22 5 42 42 H 1.08997 * 109.47180 * 180.02562 * 24 22 5 43 43 H 1.09006 * 109.46689 * 300.00339 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 1 4.0089 -0.3252 -0.5904 7 6 4.1480 -2.4548 -0.6020 8 8 3.4512 -3.4472 -0.5786 9 7 5.3736 -2.5049 -1.1604 10 6 5.8299 -3.7327 -1.8167 11 6 7.2883 -3.5682 -2.2488 12 6 7.5750 -2.3801 -3.1306 13 1 8.5065 -1.8435 -3.0275 14 6 6.6480 -1.9782 -4.0686 15 7 6.7812 -0.8156 -4.6687 16 14 5.2027 -3.0852 -4.4875 17 1 4.0198 -2.6791 -3.6868 18 1 4.8877 -2.9620 -5.9335 19 1 5.5517 -4.4944 -4.1751 20 6 8.1006 -4.8415 -2.4931 21 6 8.3716 -3.9865 -1.2527 22 6 4.1563 -1.0418 1.4358 23 6 5.6832 -0.9438 1.4277 24 6 3.5679 0.2159 2.0782 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.6958 -2.0073 -0.0005 29 1 5.9536 -1.7281 -1.1278 30 1 5.7489 -4.5680 -1.1213 31 1 5.2112 -3.9279 -2.6927 32 1 6.1293 -0.5329 -5.3289 33 1 7.5958 -5.7964 -2.3462 34 1 8.8426 -4.8199 -3.2912 35 1 9.2920 -3.4026 -1.2353 36 1 8.0454 -4.3784 -0.2893 37 1 3.8516 -1.9184 2.0075 38 1 5.9927 -0.1484 0.7498 39 1 6.0384 -0.7220 2.4341 40 1 6.1064 -1.8911 1.0937 41 1 2.4801 0.1460 2.0839 42 1 3.9319 0.3054 3.1017 43 1 3.8727 1.0925 1.5065 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563586600.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:19 Heat of formation + Delta-G solvation = -70.650217 kcal Electronic energy + Delta-G solvation = -23713.453571 eV Core-core repulsion = 20372.722738 eV Total energy + Delta-G solvation = -3340.730833 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.76020 -40.30593 -38.78616 -37.03098 -35.26818 -34.40173 -34.31494 -30.99006 -29.49822 -28.06836 -27.58409 -26.47503 -23.13456 -22.08392 -21.67568 -21.36852 -20.96107 -19.14102 -18.33032 -17.70356 -17.62837 -17.08628 -16.87225 -16.48126 -15.89647 -15.56448 -15.19575 -14.91317 -14.81781 -14.53282 -14.12905 -13.99711 -13.80109 -13.60195 -13.31390 -13.14096 -13.05664 -12.85390 -12.57879 -12.51857 -12.15243 -12.03601 -11.89009 -11.83400 -11.51072 -11.33787 -11.01661 -10.94300 -10.77327 -10.44160 -10.14452 -9.89886 -8.40122 -6.34567 1.22627 1.30259 1.34215 1.36427 1.61832 1.87790 2.22326 2.44318 2.84007 3.42529 3.55404 3.71234 3.86283 3.91798 3.95062 4.15747 4.23026 4.29526 4.43063 4.46843 4.48956 4.61266 4.65376 4.74925 4.78365 4.92616 4.93152 4.94111 4.95199 5.02312 5.08574 5.21231 5.25556 5.33939 5.38813 5.44290 5.53511 5.62728 6.26610 6.48509 6.48682 6.68138 7.05765 7.18969 7.26033 8.74703 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017865 B = 0.006139 C = 0.005482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.973196 B = 4560.237885 C = 5105.975108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.505 3.495 3 O -0.581 6.581 4 N -0.711 5.711 5 C 0.132 3.868 6 H 0.090 0.910 7 C 0.508 3.492 8 O -0.576 6.576 9 N -0.695 5.695 10 C 0.143 3.857 11 C -0.038 4.038 12 C -0.478 4.478 13 H 0.049 0.951 14 C 0.044 3.956 15 N -0.926 5.926 16 Si 0.933 3.067 17 H -0.289 1.289 18 H -0.307 1.307 19 H -0.246 1.246 20 C -0.191 4.191 21 C -0.159 4.159 22 C -0.088 4.088 23 C -0.155 4.155 24 C -0.127 4.127 25 H 0.099 0.901 26 H 0.112 0.888 27 H 0.101 0.899 28 H 0.415 0.585 29 H 0.414 0.586 30 H 0.076 0.924 31 H 0.039 0.961 32 H 0.266 0.734 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.084 0.916 40 H 0.057 0.943 41 H 0.048 0.952 42 H 0.071 0.929 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.449 -2.473 13.318 16.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.294 3.706 3 O -0.460 6.460 4 N -0.365 5.365 5 C 0.023 3.977 6 H 0.108 0.892 7 C 0.294 3.706 8 O -0.457 6.457 9 N -0.345 5.345 10 C 0.020 3.980 11 C -0.040 4.040 12 C -0.515 4.515 13 H 0.067 0.933 14 C -0.156 4.156 15 N -0.565 5.565 16 Si 0.764 3.236 17 H -0.217 1.217 18 H -0.236 1.236 19 H -0.171 1.171 20 C -0.229 4.229 21 C -0.197 4.197 22 C -0.108 4.108 23 C -0.213 4.213 24 C -0.184 4.184 25 H 0.117 0.883 26 H 0.130 0.870 27 H 0.120 0.880 28 H 0.253 0.747 29 H 0.251 0.749 30 H 0.095 0.905 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.119 0.881 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.090 0.910 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.572 -2.299 13.163 16.437 hybrid contribution -0.369 -0.252 -1.012 1.106 sum -9.942 -2.551 12.151 15.905 Atomic orbital electron populations 1.21878 0.87636 1.06201 1.06333 1.21619 0.92381 0.82442 0.74143 1.90722 1.71631 1.32508 1.51181 1.45979 1.05174 1.10267 1.75089 1.20887 0.83018 0.94896 0.98883 0.89238 1.20851 0.81647 0.90309 0.77762 1.90600 1.57264 1.37437 1.60380 1.46049 1.16332 1.17169 1.54986 1.21234 0.94438 0.86811 0.95508 1.19434 0.88705 0.95314 1.00501 1.20420 1.03499 1.10731 1.16873 0.93313 1.25437 0.99512 0.94832 0.95824 1.70007 1.37894 1.20180 1.28400 0.86232 0.80448 0.81612 0.75285 1.21655 1.23589 1.17077 1.23141 1.04461 0.95117 1.00208 1.22872 1.00053 1.03334 0.93398 1.21364 0.96888 1.00397 0.92127 1.21962 0.93356 1.02288 1.03701 1.21779 1.00198 0.96066 1.00396 0.88264 0.86956 0.88048 0.74726 0.74856 0.90535 0.94402 0.92511 0.88865 0.89867 0.89779 0.88087 0.89945 0.92602 0.89736 0.92443 0.93315 0.91049 0.93250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 10.39 71.23 0.74 -1.75 16 2 C 0.50 13.23 6.16 87.66 0.54 13.77 16 3 O -0.58 -19.73 14.23 -3.02 -0.04 -19.77 16 4 N -0.71 -19.30 4.87 -446.10 -2.17 -21.48 16 5 C 0.13 4.14 2.22 44.25 0.10 4.24 16 6 H 0.09 3.20 7.58 -2.39 -0.02 3.18 16 7 C 0.51 18.52 6.50 87.66 0.57 19.09 16 8 O -0.58 -22.86 15.98 -3.02 -0.05 -22.91 16 9 N -0.70 -26.77 4.13 -463.06 -1.91 -28.68 16 10 C 0.14 5.82 4.36 86.38 0.38 6.19 16 11 C -0.04 -1.61 1.44 -52.93 -0.08 -1.69 16 12 C -0.48 -24.67 8.85 25.60 0.23 -24.44 16 13 H 0.05 2.79 8.06 -2.91 -0.02 2.76 16 14 C 0.04 2.41 5.38 84.65 0.46 2.86 16 15 N -0.93 -54.64 13.96 21.45 0.30 -54.35 16 16 Si 0.93 45.28 23.97 68.60 1.64 46.92 16 17 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 18 H -0.31 -15.17 7.11 99.48 0.71 -14.46 16 19 H -0.25 -11.14 6.39 99.48 0.64 -10.50 16 20 C -0.19 -7.01 9.96 30.62 0.30 -6.71 16 21 C -0.16 -5.53 9.93 30.62 0.30 -5.22 16 22 C -0.09 -2.25 2.67 -10.79 -0.03 -2.28 16 23 C -0.16 -3.81 8.19 71.98 0.59 -3.22 16 24 C -0.13 -3.10 7.68 71.98 0.55 -2.55 16 25 H 0.10 1.08 7.91 -2.39 -0.02 1.06 16 26 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.41 10.15 7.62 -92.70 -0.71 9.44 16 29 H 0.41 16.09 7.14 -92.71 -0.66 15.43 16 30 H 0.08 2.83 8.06 -2.39 -0.02 2.81 16 31 H 0.04 1.72 2.58 -2.39 -0.01 1.71 16 32 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 33 H 0.09 3.02 8.14 -2.38 -0.02 3.00 16 34 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 35 H 0.08 2.94 8.14 -2.38 -0.02 2.92 16 36 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 37 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.05 1.47 8.13 -2.39 -0.02 1.45 16 39 H 0.08 1.68 8.13 -2.39 -0.02 1.67 16 40 H 0.06 1.49 6.78 -2.38 -0.02 1.47 16 41 H 0.05 1.19 5.89 -2.39 -0.01 1.18 16 42 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.05 1.41 7.26 -2.38 -0.02 1.40 16 Total: -1.00 -66.51 340.06 2.00 -64.51 By element: Atomic # 1 Polarization: 37.88 SS G_CDS: -0.42 Total: 37.46 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: 4.65 Total: -1.71 kcal Atomic # 7 Polarization: -100.72 SS G_CDS: -3.79 Total: -104.50 kcal Atomic # 8 Polarization: -42.59 SS G_CDS: -0.09 Total: -42.68 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.64 Total: 46.92 kcal Total: -66.51 2.00 -64.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563586600.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.139 kcal (2) G-P(sol) polarization free energy of solvation -66.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds