Wall clock time and date at job start Tue Mar 31 2020 05:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52999 * 115.55844 * 2 1 4 4 C 1.52995 * 117.49818 * 214.31154 * 2 1 3 5 5 C 1.52992 * 60.00113 * 252.50958 * 4 2 1 6 6 H 1.09003 * 117.49847 * 107.51002 * 5 4 2 7 7 C 1.53003 * 117.50118 * 252.51451 * 5 4 2 8 8 N 1.46500 * 109.46721 * 243.60871 * 7 5 4 9 9 C 1.34779 * 119.99483 * 180.02562 * 8 7 5 10 10 O 1.21587 * 120.00185 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99961 * 179.97438 * 9 8 7 12 12 C 1.47026 * 125.64391 * 359.97106 * 11 9 8 13 13 C 1.54330 * 107.26840 * 178.97562 * 12 11 9 14 14 C 1.55155 * 102.94292 * 337.81024 * 13 12 11 15 15 O 1.42907 * 111.00242 * 277.42480 * 14 13 12 16 16 C 1.50695 * 111.03665 * 153.58963 * 14 13 12 17 17 H 1.07999 * 120.00448 * 6.33399 * 16 14 13 18 18 C 1.37879 * 119.99755 * 186.32756 * 16 14 13 19 19 N 1.31518 * 120.00166 * 0.02562 * 18 16 14 20 20 Si 1.86807 * 119.99927 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47051 * 60.00161 * 20 18 16 22 22 H 1.48502 * 109.47072 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47104 * 299.99951 * 20 18 16 24 24 C 1.47420 * 125.65180 * 180.02562 * 11 9 8 25 25 H 1.09000 * 109.46602 * 274.31156 * 1 2 3 26 26 H 1.09001 * 109.46872 * 34.30953 * 1 2 3 27 27 H 1.08993 * 109.46848 * 154.30819 * 1 2 3 28 28 H 1.08999 * 109.47000 * 205.68869 * 3 2 1 29 29 H 1.09004 * 109.47646 * 325.68631 * 3 2 1 30 30 H 1.08995 * 109.47320 * 85.68972 * 3 2 1 31 31 H 1.09000 * 117.49814 * 145.02011 * 4 2 1 32 32 H 1.09005 * 117.52033 * 359.97438 * 4 2 1 33 33 H 1.08998 * 109.47295 * 123.60480 * 7 5 4 34 34 H 1.08995 * 109.47131 * 3.60344 * 7 5 4 35 35 H 0.96992 * 120.00272 * 359.97438 * 8 7 5 36 36 H 1.08998 * 109.88351 * 298.39161 * 12 11 9 37 37 H 1.08998 * 109.88379 * 59.55951 * 12 11 9 38 38 H 1.08998 * 110.71700 * 96.16950 * 13 12 11 39 39 H 1.08991 * 110.72004 * 219.44241 * 13 12 11 40 40 H 0.96693 * 113.99773 * 173.65155 * 15 14 13 41 41 H 0.97002 * 119.99812 * 179.97438 * 19 18 16 42 42 H 1.08997 * 110.36858 * 322.93289 * 24 11 9 43 43 H 1.08997 * 110.36396 * 85.14276 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2365 -1.1209 -0.7650 5 6 2.2366 -1.1210 0.7649 6 1 1.6116 -1.8587 1.2682 7 6 3.5491 -0.7758 1.4714 8 7 4.0084 -1.9344 2.2414 9 6 5.1521 -1.8615 2.9508 10 8 5.8028 -0.8344 2.9513 11 7 5.5745 -2.9272 3.6596 12 6 4.8882 -4.2245 3.7474 13 6 5.7494 -5.1386 4.6444 14 6 7.1561 -4.4907 4.5520 15 8 7.8393 -4.9159 3.3710 16 6 7.9722 -4.7917 5.7826 17 1 7.5917 -5.4723 6.5298 18 6 9.2048 -4.1983 5.9544 19 7 9.6681 -3.3692 5.0447 20 14 10.2162 -4.5709 7.4802 21 1 10.5073 -6.0259 7.5380 22 1 11.4916 -3.8121 7.4262 23 1 9.4534 -4.1703 8.6897 24 6 6.8005 -2.9848 4.4763 25 1 -0.3632 0.0773 1.0248 26 1 -0.3633 0.8489 -0.5793 27 1 -0.3633 -0.9260 -0.4455 28 1 3.1824 1.3085 -0.4455 29 1 1.5812 2.0743 -0.5793 30 1 2.2773 1.7414 1.0247 31 1 3.1716 -0.8751 -1.2683 32 1 1.6116 -1.8589 -1.2681 33 1 3.3891 0.0671 2.1437 34 1 4.3023 -0.5110 0.7295 35 1 3.4891 -2.7536 2.2413 36 1 3.9015 -4.0926 4.1913 37 1 4.7944 -4.6622 2.7536 38 1 5.3852 -5.1248 5.6716 39 1 5.7670 -6.1561 4.2540 40 1 8.6809 -4.4645 3.2195 41 1 10.5352 -2.9515 5.1659 42 1 7.6043 -2.4290 3.9935 43 1 6.6112 -2.5873 5.4733 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591956909.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:34 Heat of formation + Delta-G solvation = -62.425348 kcal Electronic energy + Delta-G solvation = -22653.303960 eV Core-core repulsion = 19312.929784 eV Total energy + Delta-G solvation = -3340.374176 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.74462 -38.80256 -37.24615 -34.19865 -33.97702 -32.19854 -30.30529 -29.49264 -27.98874 -27.72317 -26.37197 -24.61424 -22.48523 -21.32736 -19.70381 -19.62458 -18.71739 -17.42983 -16.96889 -16.06125 -15.41226 -15.04946 -14.83947 -14.54515 -14.29842 -14.12732 -13.78316 -13.61517 -12.98808 -12.94624 -12.74226 -12.61820 -12.36752 -12.19411 -12.01772 -11.64603 -11.56804 -11.39035 -11.19936 -10.99543 -10.79378 -10.58094 -10.46881 -10.18613 -10.11832 -9.89875 -9.51305 -9.32803 -8.73919 -8.66030 -8.32342 -7.63894 -6.24264 -4.34283 3.10535 3.24579 3.30059 3.31766 3.53341 3.80933 4.27938 4.38746 4.46898 4.58760 4.69747 4.84493 5.02533 5.13149 5.31748 5.39358 5.44201 5.57987 5.64086 5.67552 5.68345 5.70555 5.73164 5.80875 5.85220 5.90937 6.02586 6.05103 6.13274 6.17983 6.54264 6.73539 6.84273 6.92284 7.01741 7.27427 7.36413 7.70301 7.77513 8.06872 8.58746 8.70128 9.19042 9.33214 9.41398 10.82666 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038183 B = 0.003338 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.131710 B = 8387.134599 C = 8695.965380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.120 4.120 3 C -0.119 4.119 4 C -0.168 4.168 5 C -0.159 4.159 6 H 0.108 0.892 7 C 0.174 3.826 8 N -0.750 5.750 9 C 0.715 3.285 10 O -0.598 6.598 11 N -0.629 5.629 12 C 0.106 3.894 13 C -0.116 4.116 14 C 0.248 3.752 15 O -0.583 6.583 16 C -0.539 4.539 17 H 0.066 0.934 18 C 0.071 3.929 19 N -0.892 5.892 20 Si 0.904 3.096 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.275 1.275 24 C 0.114 3.886 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.393 0.607 36 H 0.050 0.950 37 H 0.055 0.945 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.381 0.619 41 H 0.270 0.730 42 H 0.085 0.915 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.072 3.536 -8.470 18.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.121 4.121 3 C -0.176 4.176 4 C -0.205 4.205 5 C -0.178 4.178 6 H 0.126 0.874 7 C 0.049 3.951 8 N -0.407 5.407 9 C 0.417 3.583 10 O -0.477 6.477 11 N -0.366 5.366 12 C -0.018 4.018 13 C -0.154 4.154 14 C 0.208 3.792 15 O -0.391 6.391 16 C -0.577 4.577 17 H 0.084 0.916 18 C -0.132 4.132 19 N -0.530 5.530 20 Si 0.731 3.269 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.200 1.200 24 C -0.008 4.008 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.226 0.774 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.231 0.769 41 H 0.080 0.920 42 H 0.103 0.897 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.961 4.110 -8.601 18.591 hybrid contribution 0.771 -0.232 0.859 1.177 sum -15.191 3.878 -7.743 17.486 Atomic orbital electron populations 1.21360 0.91936 1.01919 1.01947 1.21593 0.94722 0.91552 1.04218 1.21382 1.00188 0.93801 1.02275 1.23364 1.02544 1.00925 0.93685 1.22627 0.98624 1.02231 0.94303 0.87380 1.20580 0.92511 0.88000 0.93992 1.45099 1.25697 1.16707 1.53210 1.15518 0.80850 0.83233 0.78658 1.90881 1.57779 1.29957 1.69113 1.47931 1.27336 1.11187 1.50101 1.21919 0.95379 0.84830 0.99670 1.22586 0.95856 0.98283 0.98640 1.19631 0.87767 0.87227 0.84618 1.86099 1.39141 1.68078 1.45806 1.21413 1.02835 1.28073 1.05368 0.91613 1.25085 0.97485 0.93832 0.96834 1.69718 1.19849 1.28916 1.34513 0.86465 0.79205 0.78525 0.82705 1.20029 1.21105 1.20046 1.23118 0.83631 1.01310 0.92734 0.92153 0.92052 0.92486 0.92084 0.92127 0.91859 0.88500 0.88765 0.91612 0.91820 0.77381 0.93222 0.92695 0.90431 0.90827 0.76938 0.91955 0.89693 0.92544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 9.85 37.16 0.37 -0.46 16 2 C -0.12 -1.06 2.70 -154.51 -0.42 -1.47 16 3 C -0.12 -1.04 8.86 37.16 0.33 -0.71 16 4 C -0.17 -1.52 9.47 -26.74 -0.25 -1.77 16 5 C -0.16 -1.60 5.57 -90.62 -0.50 -2.11 16 6 H 0.11 1.00 8.04 -51.93 -0.42 0.58 16 7 C 0.17 2.35 5.04 -4.04 -0.02 2.33 16 8 N -0.75 -11.78 5.52 -65.22 -0.36 -12.14 16 9 C 0.72 15.06 8.49 -86.91 -0.74 14.32 16 10 O -0.60 -14.95 16.60 5.29 0.09 -14.87 16 11 N -0.63 -13.35 3.33 -176.23 -0.59 -13.93 16 12 C 0.11 1.86 6.15 -3.06 -0.02 1.84 16 13 C -0.12 -2.29 6.13 -24.89 -0.15 -2.45 16 14 C 0.25 6.04 0.87 -89.62 -0.08 5.97 16 15 O -0.58 -14.96 13.16 -35.23 -0.46 -15.42 16 16 C -0.54 -14.07 8.27 -34.44 -0.28 -14.35 16 17 H 0.07 1.67 7.79 -52.49 -0.41 1.27 16 18 C 0.07 1.87 5.29 -17.82 -0.09 1.77 16 19 N -0.89 -24.06 10.69 55.43 0.59 -23.47 16 20 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 22 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 24 C 0.11 2.81 5.38 -2.53 -0.01 2.79 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.39 7.92 -51.93 -0.41 -0.02 16 27 H 0.06 0.38 7.90 -51.93 -0.41 -0.03 16 28 H 0.06 0.55 7.90 -51.93 -0.41 0.14 16 29 H 0.06 0.44 7.92 -51.93 -0.41 0.03 16 30 H 0.06 0.57 7.83 -51.93 -0.41 0.17 16 31 H 0.10 0.91 7.94 -51.93 -0.41 0.50 16 32 H 0.09 0.75 8.05 -51.93 -0.42 0.33 16 33 H 0.07 0.94 7.77 -51.93 -0.40 0.54 16 34 H 0.06 0.93 7.87 -51.93 -0.41 0.52 16 35 H 0.39 5.18 7.38 -40.82 -0.30 4.87 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.08 1.45 8.03 -51.93 -0.42 1.03 16 39 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 40 H 0.38 10.06 7.56 45.56 0.34 10.41 16 41 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.08 2.36 7.33 -51.93 -0.38 1.98 16 43 H 0.06 1.44 8.03 -51.93 -0.42 1.02 16 LS Contribution 348.36 15.07 5.25 5.25 Total: -1.00 -30.34 348.36 -8.90 -39.23 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -6.52 Total: 14.20 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: -1.88 Total: 5.70 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: -0.35 Total: -49.54 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -0.38 Total: -30.29 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.34 -8.90 -39.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591956909.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.191 kcal (2) G-P(sol) polarization free energy of solvation -30.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds