Wall clock time and date at job start Tue Mar 31 2020 05:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52999 * 115.55844 * 2 1 4 4 C 1.52995 * 117.49818 * 214.31154 * 2 1 3 5 5 C 1.52992 * 60.00113 * 252.50958 * 4 2 1 6 6 H 1.09003 * 117.49847 * 107.51002 * 5 4 2 7 7 C 1.53003 * 117.50118 * 252.51451 * 5 4 2 8 8 N 1.46500 * 109.46721 * 243.60871 * 7 5 4 9 9 C 1.34779 * 119.99483 * 180.02562 * 8 7 5 10 10 O 1.21587 * 120.00185 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99961 * 179.97438 * 9 8 7 12 12 C 1.47026 * 125.64391 * 359.97106 * 11 9 8 13 13 C 1.54330 * 107.26840 * 178.97562 * 12 11 9 14 14 C 1.55155 * 102.94292 * 337.81024 * 13 12 11 15 15 O 1.42907 * 111.00242 * 277.42480 * 14 13 12 16 16 C 1.50695 * 111.03665 * 153.58963 * 14 13 12 17 17 H 1.07999 * 120.00448 * 6.33399 * 16 14 13 18 18 C 1.37879 * 119.99755 * 186.32756 * 16 14 13 19 19 N 1.31518 * 120.00166 * 0.02562 * 18 16 14 20 20 Si 1.86807 * 119.99927 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47051 * 60.00161 * 20 18 16 22 22 H 1.48502 * 109.47072 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47104 * 299.99951 * 20 18 16 24 24 C 1.47420 * 125.65180 * 180.02562 * 11 9 8 25 25 H 1.09000 * 109.46602 * 274.31156 * 1 2 3 26 26 H 1.09001 * 109.46872 * 34.30953 * 1 2 3 27 27 H 1.08993 * 109.46848 * 154.30819 * 1 2 3 28 28 H 1.08999 * 109.47000 * 205.68869 * 3 2 1 29 29 H 1.09004 * 109.47646 * 325.68631 * 3 2 1 30 30 H 1.08995 * 109.47320 * 85.68972 * 3 2 1 31 31 H 1.09000 * 117.49814 * 145.02011 * 4 2 1 32 32 H 1.09005 * 117.52033 * 359.97438 * 4 2 1 33 33 H 1.08998 * 109.47295 * 123.60480 * 7 5 4 34 34 H 1.08995 * 109.47131 * 3.60344 * 7 5 4 35 35 H 0.96992 * 120.00272 * 359.97438 * 8 7 5 36 36 H 1.08998 * 109.88351 * 298.39161 * 12 11 9 37 37 H 1.08998 * 109.88379 * 59.55951 * 12 11 9 38 38 H 1.08998 * 110.71700 * 96.16950 * 13 12 11 39 39 H 1.08991 * 110.72004 * 219.44241 * 13 12 11 40 40 H 0.96693 * 113.99773 * 173.65155 * 15 14 13 41 41 H 0.97002 * 119.99812 * 179.97438 * 19 18 16 42 42 H 1.08997 * 110.36858 * 322.93289 * 24 11 9 43 43 H 1.08997 * 110.36396 * 85.14276 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2365 -1.1209 -0.7650 5 6 2.2366 -1.1210 0.7649 6 1 1.6116 -1.8587 1.2682 7 6 3.5491 -0.7758 1.4714 8 7 4.0084 -1.9344 2.2414 9 6 5.1521 -1.8615 2.9508 10 8 5.8028 -0.8344 2.9513 11 7 5.5745 -2.9272 3.6596 12 6 4.8882 -4.2245 3.7474 13 6 5.7494 -5.1386 4.6444 14 6 7.1561 -4.4907 4.5520 15 8 7.8393 -4.9159 3.3710 16 6 7.9722 -4.7917 5.7826 17 1 7.5917 -5.4723 6.5298 18 6 9.2048 -4.1983 5.9544 19 7 9.6681 -3.3692 5.0447 20 14 10.2162 -4.5709 7.4802 21 1 10.5073 -6.0259 7.5380 22 1 11.4916 -3.8121 7.4262 23 1 9.4534 -4.1703 8.6897 24 6 6.8005 -2.9848 4.4763 25 1 -0.3632 0.0773 1.0248 26 1 -0.3633 0.8489 -0.5793 27 1 -0.3633 -0.9260 -0.4455 28 1 3.1824 1.3085 -0.4455 29 1 1.5812 2.0743 -0.5793 30 1 2.2773 1.7414 1.0247 31 1 3.1716 -0.8751 -1.2683 32 1 1.6116 -1.8589 -1.2681 33 1 3.3891 0.0671 2.1437 34 1 4.3023 -0.5110 0.7295 35 1 3.4891 -2.7536 2.2413 36 1 3.9015 -4.0926 4.1913 37 1 4.7944 -4.6622 2.7536 38 1 5.3852 -5.1248 5.6716 39 1 5.7670 -6.1561 4.2540 40 1 8.6809 -4.4645 3.2195 41 1 10.5352 -2.9515 5.1659 42 1 7.6043 -2.4290 3.9935 43 1 6.6112 -2.5873 5.4733 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591956909.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:34 Heat of formation + Delta-G solvation = -83.556867 kcal Electronic energy + Delta-G solvation = -22654.220291 eV Core-core repulsion = 19312.929784 eV Total energy + Delta-G solvation = -3341.290507 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.28925 -39.79326 -38.92470 -36.03550 -35.40688 -34.22358 -31.89007 -30.43521 -29.53067 -28.64118 -27.65699 -26.30733 -24.08817 -22.21486 -21.46023 -21.08664 -19.76278 -19.12363 -18.64587 -17.43848 -16.98269 -16.89323 -16.26438 -16.07499 -15.50562 -15.20686 -15.01713 -14.73173 -14.64558 -14.39749 -14.19112 -13.74024 -13.51036 -13.38842 -13.26389 -13.05467 -12.85890 -12.80007 -12.52510 -12.33501 -12.30766 -12.26085 -12.08026 -11.93829 -11.39798 -11.18190 -10.95754 -10.65452 -10.51315 -10.31883 -10.13797 -9.31914 -8.23287 -6.40926 1.44047 1.44550 1.52963 1.66779 2.14311 2.39112 2.72011 3.02592 3.12471 3.62554 3.80281 3.82882 3.89159 4.08917 4.17688 4.19420 4.26153 4.35213 4.52392 4.63189 4.70009 4.77562 4.80709 4.83884 4.94204 5.05162 5.07367 5.07833 5.10115 5.11045 5.20794 5.30370 5.30868 5.38757 5.47285 5.47436 5.53820 5.76729 6.06150 6.19410 6.66428 7.06778 7.28166 7.35734 7.56847 8.81634 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038183 B = 0.003338 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.131710 B = 8387.134599 C = 8695.965380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.115 4.115 3 C -0.123 4.123 4 C -0.164 4.164 5 C -0.164 4.164 6 H 0.124 0.876 7 C 0.175 3.825 8 N -0.727 5.727 9 C 0.708 3.292 10 O -0.647 6.647 11 N -0.634 5.634 12 C 0.107 3.893 13 C -0.110 4.110 14 C 0.232 3.768 15 O -0.587 6.587 16 C -0.556 4.556 17 H 0.070 0.930 18 C 0.025 3.975 19 N -0.916 5.916 20 Si 0.965 3.035 21 H -0.269 1.269 22 H -0.287 1.287 23 H -0.269 1.269 24 C 0.129 3.871 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.050 0.950 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.088 0.912 32 H 0.112 0.888 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.409 0.591 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.372 0.628 41 H 0.269 0.731 42 H 0.042 0.958 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.594 2.347 -8.646 20.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.115 4.115 3 C -0.180 4.180 4 C -0.201 4.201 5 C -0.183 4.183 6 H 0.142 0.858 7 C 0.051 3.949 8 N -0.384 5.384 9 C 0.410 3.590 10 O -0.530 6.530 11 N -0.370 5.370 12 C -0.015 4.015 13 C -0.148 4.148 14 C 0.191 3.809 15 O -0.394 6.394 16 C -0.595 4.595 17 H 0.088 0.912 18 C -0.176 4.176 19 N -0.555 5.555 20 Si 0.790 3.210 21 H -0.194 1.194 22 H -0.213 1.213 23 H -0.194 1.194 24 C 0.005 3.995 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.069 0.931 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.107 0.893 32 H 0.130 0.870 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.246 0.754 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.221 0.779 41 H 0.078 0.922 42 H 0.060 0.940 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -18.556 2.877 -8.798 20.736 hybrid contribution 1.546 0.174 0.877 1.786 sum -17.010 3.052 -7.921 19.010 Atomic orbital electron populations 1.21378 0.90303 1.02902 1.02380 1.21718 0.95829 0.91020 1.02948 1.21419 1.00100 0.94499 1.02002 1.23428 1.02567 1.01387 0.92743 1.22522 0.97089 1.03826 0.94834 0.85765 1.20643 0.93977 0.86996 0.93292 1.44929 1.23808 1.18034 1.51627 1.15776 0.81811 0.82467 0.78973 1.90841 1.59582 1.31864 1.70726 1.47876 1.26675 1.12684 1.49806 1.22128 0.96223 0.82484 1.00679 1.22594 0.92977 0.99049 1.00148 1.19877 0.89831 0.87515 0.83656 1.86091 1.38765 1.68034 1.46558 1.21774 1.03400 1.28088 1.06195 0.91171 1.25861 0.98673 0.93658 0.99447 1.69853 1.19956 1.29659 1.36041 0.85503 0.77569 0.78424 0.79496 1.19357 1.21261 1.19444 1.22653 0.84040 1.01084 0.91739 0.91986 0.91131 0.91506 0.93082 0.90547 0.92620 0.89340 0.86991 0.92736 0.93411 0.75414 0.89121 0.90874 0.89203 0.89551 0.77944 0.92225 0.93961 0.94357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 9.85 71.99 0.71 -0.58 16 2 C -0.11 -1.77 2.70 -52.18 -0.14 -1.91 16 3 C -0.12 -2.02 8.86 71.98 0.64 -1.39 16 4 C -0.16 -2.60 9.47 30.59 0.29 -2.31 16 5 C -0.16 -2.96 5.57 -10.80 -0.06 -3.02 16 6 H 0.12 1.88 8.04 -2.39 -0.02 1.86 16 7 C 0.17 4.64 5.04 86.38 0.44 5.07 16 8 N -0.73 -21.92 5.52 -478.53 -2.64 -24.56 16 9 C 0.71 29.90 8.49 179.05 1.52 31.42 16 10 O -0.65 -33.56 16.60 -3.99 -0.07 -33.63 16 11 N -0.63 -26.68 3.33 -829.73 -2.76 -29.44 16 12 C 0.11 3.47 6.15 86.73 0.53 4.00 16 13 C -0.11 -4.12 6.13 31.78 0.19 -3.93 16 14 C 0.23 11.30 0.87 -10.15 -0.01 11.29 16 15 O -0.59 -30.49 13.16 -148.98 -1.96 -32.45 16 16 C -0.56 -29.12 8.27 25.60 0.21 -28.91 16 17 H 0.07 3.52 7.79 -2.91 -0.02 3.50 16 18 C 0.02 1.30 5.29 84.65 0.45 1.75 16 19 N -0.92 -50.98 10.69 21.45 0.23 -50.75 16 20 Si 0.96 42.14 29.54 68.60 2.03 44.17 16 21 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 22 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 23 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 24 C 0.13 6.51 5.38 86.86 0.47 6.97 16 25 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.07 0.69 7.92 -2.39 -0.02 0.67 16 27 H 0.07 0.65 7.90 -2.39 -0.02 0.63 16 28 H 0.05 0.92 7.90 -2.39 -0.02 0.91 16 29 H 0.08 1.00 7.92 -2.39 -0.02 0.98 16 30 H 0.05 0.99 7.83 -2.39 -0.02 0.97 16 31 H 0.09 1.56 7.94 -2.39 -0.02 1.55 16 32 H 0.11 1.40 8.05 -2.38 -0.02 1.38 16 33 H 0.05 1.58 7.77 -2.39 -0.02 1.56 16 34 H 0.05 1.42 7.87 -2.39 -0.02 1.41 16 35 H 0.41 9.61 7.38 -92.71 -0.68 8.92 16 36 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.09 3.12 8.03 -2.39 -0.02 3.11 16 39 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 40 H 0.37 20.40 7.56 -74.06 -0.56 19.84 16 41 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 42 H 0.04 2.47 7.33 -2.39 -0.02 2.46 16 43 H 0.04 2.02 8.03 -2.39 -0.02 2.01 16 Total: -1.00 -67.80 348.36 -0.17 -67.97 By element: Atomic # 1 Polarization: 40.46 SS G_CDS: -0.24 Total: 40.22 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: 5.24 Total: 18.46 kcal Atomic # 7 Polarization: -99.58 SS G_CDS: -5.17 Total: -104.75 kcal Atomic # 8 Polarization: -64.05 SS G_CDS: -2.03 Total: -66.07 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -67.80 -0.17 -67.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591956909.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.582 kcal (2) G-P(sol) polarization free energy of solvation -67.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds