Wall clock time and date at job start Tue Mar 31 2020 06:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47074 * 2 1 4 4 C 1.53002 * 109.47240 * 119.99937 * 2 1 3 5 5 H 1.09000 * 115.56147 * 274.30936 * 4 2 1 6 6 C 1.53001 * 117.49955 * 128.61869 * 4 2 1 7 7 C 1.52995 * 60.00048 * 252.51501 * 6 4 2 8 8 H 1.08993 * 117.50009 * 107.51812 * 7 6 4 9 9 N 1.46504 * 117.49537 * 252.51054 * 7 6 4 10 10 C 1.34777 * 119.99854 * 223.60703 * 9 7 6 11 11 O 1.21593 * 119.99953 * 0.02562 * 10 9 7 12 12 N 1.34773 * 120.00097 * 180.27545 * 10 9 7 13 13 C 1.47424 * 125.64847 * 359.42578 * 12 10 9 14 14 C 1.55124 * 104.72581 * 155.81631 * 13 12 10 15 15 C 1.55157 * 101.48746 * 37.28923 * 14 13 12 16 16 O 1.42900 * 110.71805 * 82.70019 * 15 14 13 17 17 C 1.50699 * 110.71911 * 205.96934 * 15 14 13 18 18 H 1.07992 * 120.00541 * 354.98156 * 17 15 14 19 19 C 1.37880 * 119.99807 * 174.97762 * 17 15 14 20 20 N 1.31519 * 119.99642 * 0.02562 * 19 17 15 21 21 Si 1.86795 * 120.00055 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47248 * 60.00032 * 21 19 17 23 23 H 1.48506 * 109.47269 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47185 * 299.99845 * 21 19 17 25 25 C 1.47023 * 125.65265 * 179.72599 * 12 10 9 26 26 H 1.08998 * 109.47621 * 299.99996 * 1 2 3 27 27 H 1.09005 * 109.46973 * 60.00257 * 1 2 3 28 28 H 1.09001 * 109.47069 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47246 * 239.99987 * 2 1 3 30 30 H 1.09002 * 109.47161 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47443 * 299.99809 * 3 2 1 32 32 H 1.08996 * 109.47507 * 60.00254 * 3 2 1 33 33 H 1.09003 * 117.49229 * 145.01960 * 6 4 2 34 34 H 1.09002 * 117.49960 * 0.02562 * 6 4 2 35 35 H 0.97000 * 120.00410 * 43.61429 * 9 7 6 36 36 H 1.09007 * 110.36232 * 274.73996 * 13 12 10 37 37 H 1.09004 * 110.37027 * 37.06173 * 13 12 10 38 38 H 1.09004 * 111.18844 * 279.18730 * 14 13 12 39 39 H 1.08997 * 110.94432 * 155.28923 * 14 13 12 40 40 H 0.96696 * 114.00505 * 185.02195 * 16 15 14 41 41 H 0.97005 * 119.99601 * 179.97438 * 20 19 17 42 42 H 1.09003 * 109.88289 * 300.44400 * 25 12 10 43 43 H 1.09000 * 109.88003 * 61.60218 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 2.1271 -0.1061 2.1449 6 6 3.0741 -1.8314 1.0514 7 6 1.6357 -2.1852 1.4343 8 1 1.0065 -2.6349 0.6662 9 7 1.3953 -2.6529 2.8016 10 6 0.5845 -3.7071 3.0205 11 8 0.0529 -4.2702 2.0830 12 7 0.3589 -4.1339 4.2788 13 6 0.9409 -3.5506 5.5013 14 6 -0.0509 -3.9327 6.6312 15 6 -0.4765 -5.3608 6.1990 16 8 0.4861 -6.3264 6.6271 17 6 -1.8443 -5.6950 6.7361 18 1 -2.3470 -5.0068 7.3993 19 6 -2.4539 -6.8795 6.3806 20 7 -1.8415 -7.7178 5.5732 21 14 -4.1497 -7.2935 7.0457 22 1 -5.1168 -6.2502 6.6195 23 1 -4.5804 -8.6126 6.5168 24 1 -4.1003 -7.3465 8.5289 25 6 -0.5034 -5.2623 4.6593 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.8415 -1.9465 1.8169 34 1 3.3914 -2.0477 0.0312 35 1 1.8195 -2.2039 3.5495 36 1 1.9240 -3.9796 5.6953 37 1 1.0105 -2.4668 5.4085 38 1 -0.9072 -3.2584 6.6486 39 1 0.4495 -3.9503 7.5994 40 1 0.3072 -7.2245 6.3166 41 1 -2.2703 -8.5513 5.3234 42 1 -1.5225 -5.0819 4.3172 43 1 -0.1213 -6.1847 4.2220 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592029554.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:45 Heat of formation + Delta-G solvation = -64.914129 kcal Electronic energy + Delta-G solvation = -22755.842758 eV Core-core repulsion = 19415.360661 eV Total energy + Delta-G solvation = -3340.482097 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.84721 -38.44686 -37.11024 -34.30584 -34.20588 -32.21985 -31.84171 -29.79131 -27.74554 -27.30391 -25.13225 -23.19359 -22.84945 -21.62926 -20.23629 -19.65582 -19.30657 -17.53441 -17.04413 -16.35096 -15.32901 -15.11088 -14.97802 -14.53469 -14.34529 -14.14624 -13.42451 -13.21710 -12.95572 -12.88197 -12.80920 -12.51924 -12.36371 -12.21147 -11.68904 -11.51020 -11.43809 -11.25993 -11.02174 -10.91326 -10.86498 -10.78873 -10.67606 -10.49868 -10.16855 -10.09383 -9.62418 -9.30794 -8.66687 -8.55807 -8.31856 -7.75434 -6.26819 -4.35612 3.01773 3.24217 3.29528 3.31423 3.49802 3.97965 4.26367 4.34708 4.59583 4.69814 4.81093 4.97111 5.00778 5.13359 5.25292 5.36186 5.43533 5.50642 5.64781 5.68124 5.71160 5.75007 5.75861 5.87474 5.89198 6.00633 6.01507 6.12506 6.20658 6.24276 6.50637 6.71456 6.79381 6.89348 6.98681 7.26579 7.32499 7.63503 7.74291 8.04610 8.50887 8.67845 9.11111 9.30185 9.38940 10.80980 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028331 B = 0.003623 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.070983 B = 7725.848681 C = 8027.053877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.063 4.063 3 C -0.143 4.143 4 C -0.159 4.159 5 H 0.104 0.896 6 C -0.194 4.194 7 C 0.115 3.885 8 H 0.136 0.864 9 N -0.722 5.722 10 C 0.718 3.282 11 O -0.595 6.595 12 N -0.629 5.629 13 C 0.102 3.898 14 C -0.116 4.116 15 C 0.248 3.752 16 O -0.585 6.585 17 C -0.539 4.539 18 H 0.066 0.934 19 C 0.071 3.929 20 N -0.893 5.893 21 Si 0.904 3.096 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 C 0.123 3.877 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.393 0.607 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.382 0.618 41 H 0.271 0.729 42 H 0.065 0.935 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.158 14.242 -6.840 17.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.082 4.082 3 C -0.200 4.200 4 C -0.179 4.179 5 H 0.122 0.878 6 C -0.233 4.233 7 C 0.007 3.993 8 H 0.154 0.846 9 N -0.376 5.376 10 C 0.421 3.579 11 O -0.474 6.474 12 N -0.366 5.366 13 C -0.021 4.021 14 C -0.154 4.154 15 C 0.208 3.792 16 O -0.394 6.394 17 C -0.577 4.577 18 H 0.084 0.916 19 C -0.133 4.133 20 N -0.532 5.532 21 Si 0.731 3.269 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.200 1.200 25 C 0.001 3.999 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.118 0.882 35 H 0.228 0.772 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.232 0.768 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.977 14.139 -7.387 17.836 hybrid contribution -0.842 -0.526 0.416 1.077 sum 7.135 13.613 -6.970 16.876 Atomic orbital electron populations 1.21833 0.94762 1.02426 1.01501 1.20678 0.95866 0.95763 0.95904 1.21800 1.00923 0.95648 1.01664 1.22920 1.03607 0.91389 0.99987 0.87816 1.23624 0.93679 1.03067 1.02979 1.21405 0.97103 0.95156 0.85605 0.84625 1.44526 1.51874 1.33961 1.07254 1.15454 0.79679 0.80135 0.82681 1.90878 1.55335 1.59750 1.41416 1.47972 1.50013 1.35504 1.03144 1.22290 0.97721 0.96266 0.85815 1.22760 0.97851 0.97938 0.96807 1.19497 0.87566 0.84931 0.87239 1.86103 1.52843 1.21963 1.78461 1.21447 1.01306 1.04846 1.30090 0.91601 1.25077 0.98345 0.95907 0.93937 1.69698 1.38840 1.10701 1.33926 0.86458 0.83457 0.77688 0.79279 1.20028 1.21077 1.20014 1.22873 0.92511 0.85992 0.98501 0.92639 0.92848 0.92149 0.91057 0.92685 0.92739 0.92701 0.88751 0.88233 0.77233 0.91964 0.92685 0.90465 0.90614 0.76770 0.91938 0.91706 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.03 37.15 0.34 -1.11 16 2 C -0.06 -0.57 3.07 -90.62 -0.28 -0.85 16 3 C -0.14 -1.08 9.18 37.16 0.34 -0.74 16 4 C -0.16 -1.59 5.07 -90.62 -0.46 -2.05 16 5 H 0.10 0.99 8.11 -51.93 -0.42 0.57 16 6 C -0.19 -2.00 10.10 -26.73 -0.27 -2.27 16 7 C 0.11 1.52 5.64 -67.93 -0.38 1.13 16 8 H 0.14 2.06 6.86 -51.93 -0.36 1.70 16 9 N -0.72 -11.03 5.53 -58.68 -0.32 -11.36 16 10 C 0.72 14.73 8.49 -86.92 -0.74 13.99 16 11 O -0.60 -14.51 16.24 5.28 0.09 -14.42 16 12 N -0.63 -13.12 3.32 -176.10 -0.59 -13.70 16 13 C 0.10 1.78 6.58 -2.41 -0.02 1.76 16 14 C -0.12 -2.27 6.24 -24.47 -0.15 -2.43 16 15 C 0.25 5.98 0.85 -89.94 -0.08 5.91 16 16 O -0.58 -14.63 13.08 -35.23 -0.46 -15.09 16 17 C -0.54 -14.08 8.12 -34.44 -0.28 -14.36 16 18 H 0.07 1.69 7.78 -52.49 -0.41 1.28 16 19 C 0.07 1.85 5.28 -17.82 -0.09 1.76 16 20 N -0.89 -23.92 10.98 55.43 0.61 -23.31 16 21 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 C 0.12 3.02 5.24 -3.07 -0.02 3.00 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.69 7.29 -51.93 -0.38 0.31 16 29 H 0.07 0.62 7.90 -51.93 -0.41 0.21 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.10 0.93 8.05 -51.93 -0.42 0.51 16 35 H 0.39 5.03 7.30 -40.82 -0.30 4.73 16 36 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 37 H 0.05 0.76 7.28 -51.93 -0.38 0.38 16 38 H 0.08 1.47 8.04 -51.93 -0.42 1.05 16 39 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.38 9.80 7.47 45.56 0.34 10.14 16 41 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.06 1.74 7.81 -51.93 -0.41 1.34 16 43 H 0.06 1.70 7.92 -51.93 -0.41 1.29 16 LS Contribution 348.15 15.07 5.25 5.25 Total: -1.00 -29.68 348.15 -9.02 -38.69 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -6.48 Total: 14.69 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -2.09 Total: 3.76 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: -0.30 Total: -48.37 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -0.37 Total: -29.51 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.68 -9.02 -38.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592029554.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.222 kcal (2) G-P(sol) polarization free energy of solvation -29.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds