Wall clock time and date at job start Tue Mar 31 2020 06:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47074 * 2 1 4 4 C 1.53002 * 109.47240 * 119.99937 * 2 1 3 5 5 H 1.09000 * 115.56147 * 274.30936 * 4 2 1 6 6 C 1.53001 * 117.49955 * 128.61869 * 4 2 1 7 7 C 1.52995 * 60.00048 * 252.51501 * 6 4 2 8 8 H 1.08993 * 117.50009 * 107.51812 * 7 6 4 9 9 N 1.46504 * 117.49537 * 252.51054 * 7 6 4 10 10 C 1.34777 * 119.99854 * 223.60703 * 9 7 6 11 11 O 1.21593 * 119.99953 * 0.02562 * 10 9 7 12 12 N 1.34773 * 120.00097 * 180.27545 * 10 9 7 13 13 C 1.47424 * 125.64847 * 359.42578 * 12 10 9 14 14 C 1.55124 * 104.72581 * 155.81631 * 13 12 10 15 15 C 1.55157 * 101.48746 * 37.28923 * 14 13 12 16 16 O 1.42900 * 110.71805 * 82.70019 * 15 14 13 17 17 C 1.50699 * 110.71911 * 205.96934 * 15 14 13 18 18 H 1.07992 * 120.00541 * 354.98156 * 17 15 14 19 19 C 1.37880 * 119.99807 * 174.97762 * 17 15 14 20 20 N 1.31519 * 119.99642 * 0.02562 * 19 17 15 21 21 Si 1.86795 * 120.00055 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47248 * 60.00032 * 21 19 17 23 23 H 1.48506 * 109.47269 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47185 * 299.99845 * 21 19 17 25 25 C 1.47023 * 125.65265 * 179.72599 * 12 10 9 26 26 H 1.08998 * 109.47621 * 299.99996 * 1 2 3 27 27 H 1.09005 * 109.46973 * 60.00257 * 1 2 3 28 28 H 1.09001 * 109.47069 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47246 * 239.99987 * 2 1 3 30 30 H 1.09002 * 109.47161 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47443 * 299.99809 * 3 2 1 32 32 H 1.08996 * 109.47507 * 60.00254 * 3 2 1 33 33 H 1.09003 * 117.49229 * 145.01960 * 6 4 2 34 34 H 1.09002 * 117.49960 * 0.02562 * 6 4 2 35 35 H 0.97000 * 120.00410 * 43.61429 * 9 7 6 36 36 H 1.09007 * 110.36232 * 274.73996 * 13 12 10 37 37 H 1.09004 * 110.37027 * 37.06173 * 13 12 10 38 38 H 1.09004 * 111.18844 * 279.18730 * 14 13 12 39 39 H 1.08997 * 110.94432 * 155.28923 * 14 13 12 40 40 H 0.96696 * 114.00505 * 185.02195 * 16 15 14 41 41 H 0.97005 * 119.99601 * 179.97438 * 20 19 17 42 42 H 1.09003 * 109.88289 * 300.44400 * 25 12 10 43 43 H 1.09000 * 109.88003 * 61.60218 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 2.1271 -0.1061 2.1449 6 6 3.0741 -1.8314 1.0514 7 6 1.6357 -2.1852 1.4343 8 1 1.0065 -2.6349 0.6662 9 7 1.3953 -2.6529 2.8016 10 6 0.5845 -3.7071 3.0205 11 8 0.0529 -4.2702 2.0830 12 7 0.3589 -4.1339 4.2788 13 6 0.9409 -3.5506 5.5013 14 6 -0.0509 -3.9327 6.6312 15 6 -0.4765 -5.3608 6.1990 16 8 0.4861 -6.3264 6.6271 17 6 -1.8443 -5.6950 6.7361 18 1 -2.3470 -5.0068 7.3993 19 6 -2.4539 -6.8795 6.3806 20 7 -1.8415 -7.7178 5.5732 21 14 -4.1497 -7.2935 7.0457 22 1 -5.1168 -6.2502 6.6195 23 1 -4.5804 -8.6126 6.5168 24 1 -4.1003 -7.3465 8.5289 25 6 -0.5034 -5.2623 4.6593 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.8415 -1.9465 1.8169 34 1 3.3914 -2.0477 0.0312 35 1 1.8195 -2.2039 3.5495 36 1 1.9240 -3.9796 5.6953 37 1 1.0105 -2.4668 5.4085 38 1 -0.9072 -3.2584 6.6486 39 1 0.4495 -3.9503 7.5994 40 1 0.3072 -7.2245 6.3166 41 1 -2.2703 -8.5513 5.3234 42 1 -1.5225 -5.0819 4.3172 43 1 -0.1213 -6.1847 4.2220 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592029554.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:45 Heat of formation + Delta-G solvation = -85.429048 kcal Electronic energy + Delta-G solvation = -22756.732352 eV Core-core repulsion = 19415.360661 eV Total energy + Delta-G solvation = -3341.371691 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.35517 -39.68294 -38.66939 -36.08164 -35.31080 -34.23647 -33.05206 -31.41408 -29.53788 -27.99503 -27.02627 -24.57372 -23.83094 -22.78815 -21.44303 -21.36596 -20.52718 -19.21177 -18.82193 -17.69438 -17.06635 -16.71652 -16.28893 -16.06684 -15.67712 -15.15232 -14.96245 -14.76781 -14.66971 -14.03135 -13.86018 -13.75544 -13.50576 -13.45340 -13.29759 -13.01427 -12.82431 -12.53555 -12.36421 -12.32037 -12.25951 -12.13472 -12.08794 -11.83700 -11.58892 -11.34487 -11.16619 -10.95087 -10.65267 -10.30395 -9.90434 -9.31607 -8.26245 -6.42369 1.42120 1.43303 1.51201 1.59201 2.04249 2.37856 2.93732 2.98440 3.00509 3.73657 3.78799 3.80440 4.01767 4.03703 4.14739 4.17146 4.36620 4.42122 4.46076 4.56833 4.67602 4.71439 4.81098 4.85002 4.94431 4.99323 5.04604 5.08949 5.12112 5.22332 5.23623 5.29167 5.35591 5.44631 5.49063 5.51410 5.61243 5.74154 6.02746 6.16039 6.64350 7.02872 7.26938 7.34530 7.54118 8.79694 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028331 B = 0.003623 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.070983 B = 7725.848681 C = 8027.053877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.065 4.065 3 C -0.139 4.139 4 C -0.133 4.133 5 H 0.118 0.882 6 C -0.174 4.174 7 C 0.074 3.926 8 H 0.107 0.893 9 N -0.699 5.699 10 C 0.712 3.288 11 O -0.644 6.644 12 N -0.635 5.635 13 C 0.107 3.893 14 C -0.110 4.110 15 C 0.233 3.767 16 O -0.586 6.586 17 C -0.559 4.559 18 H 0.068 0.932 19 C 0.025 3.975 20 N -0.916 5.916 21 Si 0.964 3.036 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.267 1.267 25 C 0.143 3.857 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.035 0.965 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.410 0.590 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.375 0.625 41 H 0.270 0.730 42 H 0.028 0.972 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.485 16.893 -6.276 20.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.083 4.083 3 C -0.196 4.196 4 C -0.153 4.153 5 H 0.136 0.864 6 C -0.213 4.213 7 C -0.032 4.032 8 H 0.125 0.875 9 N -0.354 5.354 10 C 0.414 3.586 11 O -0.527 6.527 12 N -0.372 5.372 13 C -0.015 4.015 14 C -0.148 4.148 15 C 0.193 3.807 16 O -0.394 6.394 17 C -0.597 4.597 18 H 0.086 0.914 19 C -0.176 4.176 20 N -0.555 5.555 21 Si 0.789 3.211 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.192 1.192 25 C 0.019 3.981 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.054 0.946 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.247 0.753 36 H 0.090 0.910 37 H 0.120 0.880 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.224 0.776 41 H 0.079 0.921 42 H 0.047 0.953 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 9.357 16.860 -6.803 20.448 hybrid contribution -1.235 -1.323 0.175 1.818 sum 8.122 15.537 -6.628 18.744 Atomic orbital electron populations 1.21821 0.95671 1.00936 1.02044 1.20732 0.95066 0.96964 0.95559 1.21762 1.01440 0.94171 1.02212 1.22998 1.01717 0.89722 1.00857 0.86370 1.23704 0.92071 1.01587 1.03934 1.21504 0.99581 0.98211 0.83926 0.87461 1.44271 1.50202 1.32060 1.08839 1.15683 0.80062 0.80952 0.81858 1.90838 1.57361 1.61584 1.42912 1.47895 1.49859 1.34865 1.04538 1.22463 0.96999 0.98886 0.83131 1.22756 0.98871 0.94756 0.98392 1.19705 0.87164 0.87051 0.86778 1.86092 1.53122 1.21747 1.78439 1.21812 1.02534 1.05115 1.30224 0.91378 1.25838 1.01663 0.95970 0.94157 1.69815 1.40056 1.10877 1.34730 0.85522 0.79411 0.77268 0.78929 1.19804 1.21033 1.19157 1.22344 0.90996 0.85935 0.98859 0.92847 0.91606 0.94624 0.90747 0.91791 0.91978 0.92470 0.87462 0.87127 0.75340 0.90977 0.88050 0.89810 0.89015 0.77626 0.92118 0.95334 0.95506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.03 71.98 0.65 -2.10 16 2 C -0.06 -1.01 3.07 -10.80 -0.03 -1.04 16 3 C -0.14 -1.64 9.18 71.98 0.66 -0.98 16 4 C -0.13 -2.31 5.07 -10.79 -0.05 -2.36 16 5 H 0.12 1.77 8.11 -2.39 -0.02 1.75 16 6 C -0.17 -3.11 10.10 30.59 0.31 -2.80 16 7 C 0.07 1.89 5.64 44.99 0.25 2.15 16 8 H 0.11 3.39 6.86 -2.39 -0.02 3.38 16 9 N -0.70 -20.46 5.53 -457.82 -2.53 -22.99 16 10 C 0.71 29.54 8.49 179.06 1.52 31.06 16 11 O -0.64 -32.93 16.24 -4.01 -0.07 -32.99 16 12 N -0.63 -26.51 3.32 -829.32 -2.76 -29.27 16 13 C 0.11 3.45 6.58 86.93 0.57 4.03 16 14 C -0.11 -4.14 6.24 32.06 0.20 -3.94 16 15 C 0.23 11.37 0.85 -10.35 -0.01 11.36 16 16 O -0.59 -29.70 13.08 -148.98 -1.95 -31.65 16 17 C -0.56 -29.53 8.12 25.60 0.21 -29.32 16 18 H 0.07 3.48 7.78 -2.91 -0.02 3.45 16 19 C 0.02 1.31 5.28 84.65 0.45 1.76 16 20 N -0.92 -50.72 10.98 21.45 0.24 -50.49 16 21 Si 0.96 42.49 29.54 68.60 2.03 44.52 16 22 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 23 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 24 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 25 C 0.14 7.28 5.24 86.73 0.45 7.73 16 26 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.03 0.83 7.29 -2.39 -0.02 0.81 16 29 H 0.07 1.14 7.90 -2.38 -0.02 1.12 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.11 1.76 8.05 -2.39 -0.02 1.74 16 35 H 0.41 9.20 7.30 -92.71 -0.68 8.52 16 36 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 37 H 0.10 2.36 7.28 -2.38 -0.02 2.35 16 38 H 0.08 3.03 8.04 -2.39 -0.02 3.01 16 39 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 40 H 0.37 19.92 7.47 -74.06 -0.55 19.36 16 41 H 0.27 14.36 8.31 -92.70 -0.77 13.59 16 42 H 0.03 1.62 7.81 -2.39 -0.02 1.60 16 43 H 0.03 1.52 7.92 -2.39 -0.02 1.50 16 Total: -1.00 -67.62 348.15 -0.08 -67.70 By element: Atomic # 1 Polarization: 39.86 SS G_CDS: -0.22 Total: 39.63 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: 5.18 Total: 15.55 kcal Atomic # 7 Polarization: -97.70 SS G_CDS: -5.05 Total: -102.75 kcal Atomic # 8 Polarization: -62.63 SS G_CDS: -2.01 Total: -64.65 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -67.62 -0.08 -67.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592029554.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.729 kcal (2) G-P(sol) polarization free energy of solvation -67.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds