Wall clock time and date at job start Tue Mar 31 2020 05:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00156 * 2 1 4 4 C 1.53002 * 115.54823 * 325.66744 * 3 2 1 5 5 C 1.53072 * 117.53648 * 111.38836 * 3 2 1 6 6 C 1.52997 * 59.98753 * 107.46655 * 5 3 2 7 7 H 1.09004 * 117.49317 * 107.49669 * 6 5 3 8 8 N 1.46502 * 117.50181 * 252.49973 * 6 5 3 9 9 C 1.34770 * 119.99720 * 223.74706 * 8 6 5 10 10 O 1.21584 * 120.00531 * 4.98401 * 9 8 6 11 11 N 1.34779 * 119.99633 * 184.98299 * 9 8 6 12 12 C 1.46920 * 120.63326 * 354.64611 * 11 9 8 13 13 C 1.53188 * 108.77704 * 233.62994 * 12 11 9 14 14 C 1.53044 * 109.30824 * 305.36082 * 13 12 11 15 15 C 1.53035 * 109.53802 * 61.36874 * 14 13 12 16 16 H 1.08999 * 109.52691 * 58.59991 * 15 14 13 17 17 C 1.50705 * 109.49857 * 178.68229 * 15 14 13 18 18 H 1.07999 * 119.99735 * 34.68245 * 17 15 14 19 19 C 1.37879 * 119.99713 * 214.67992 * 17 15 14 20 20 N 1.31509 * 120.00435 * 354.80337 * 19 17 15 21 21 Si 1.86804 * 119.99575 * 174.80140 * 19 17 15 22 22 H 1.48498 * 109.47270 * 60.00255 * 21 19 17 23 23 H 1.48502 * 109.46812 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47181 * 299.99890 * 21 19 17 25 25 C 1.46927 * 120.62768 * 174.66198 * 11 9 8 26 26 H 1.08996 * 109.46911 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46422 * 300.00232 * 1 2 3 28 28 H 1.08995 * 109.47099 * 60.00056 * 1 2 3 29 29 H 1.08999 * 109.47594 * 274.32935 * 4 3 2 30 30 H 1.09002 * 109.47083 * 34.33736 * 4 3 2 31 31 H 1.09004 * 109.46597 * 154.32709 * 4 3 2 32 32 H 1.09002 * 117.50880 * 359.97438 * 5 3 2 33 33 H 1.08995 * 117.49336 * 214.95690 * 5 3 2 34 34 H 0.97000 * 119.99712 * 43.75028 * 8 6 5 35 35 H 1.09004 * 109.58648 * 353.41271 * 12 11 9 36 36 H 1.08999 * 109.59119 * 113.69442 * 12 11 9 37 37 H 1.08996 * 109.50086 * 65.30879 * 13 12 11 38 38 H 1.08999 * 109.50118 * 185.41280 * 13 12 11 39 39 H 1.08993 * 109.46136 * 301.34239 * 14 13 12 40 40 H 1.09004 * 109.45649 * 181.38607 * 14 13 12 41 41 H 0.97006 * 119.99966 * 4.95951 * 20 19 17 42 42 H 1.09001 * 109.59135 * 6.58456 * 25 11 9 43 43 H 1.08999 * 109.58694 * 246.15770 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.2373 2.3719 -0.7785 5 6 2.7503 1.7506 1.2638 6 6 3.5375 1.3988 -0.0001 7 1 3.9914 2.2198 -0.5550 8 7 4.2920 0.1430 0.0005 9 6 5.5464 0.1103 -0.4912 10 8 6.0852 1.1390 -0.8514 11 7 6.2036 -1.0627 -0.5836 12 6 5.6132 -2.2960 -0.0458 13 6 6.6176 -2.9474 0.9099 14 6 7.9484 -3.1529 0.1824 15 6 8.5073 -1.7970 -0.2549 16 1 8.6434 -1.1601 0.6191 17 6 9.8332 -1.9976 -0.9425 18 1 10.0002 -2.8765 -1.5476 19 6 10.8330 -1.0591 -0.7992 20 7 10.5971 0.0589 -0.1480 21 14 12.5228 -1.3756 -1.5300 22 1 12.4019 -1.5492 -2.9998 23 1 13.4119 -0.2223 -1.2388 24 1 13.0982 -2.6069 -0.9316 25 6 7.5242 -1.1324 -1.2238 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.5280 2.3374 -1.8285 30 1 0.1676 2.1816 -0.6912 31 1 1.4657 3.3565 -0.3704 32 1 2.7936 1.0477 2.0959 33 1 2.6861 2.8029 1.5402 34 1 3.8886 -0.6650 0.3546 35 1 4.6970 -2.0572 0.4943 36 1 5.3874 -2.9800 -0.8639 37 1 6.7712 -2.2999 1.7731 38 1 6.2318 -3.9114 1.2415 39 1 7.7897 -3.7803 -0.6946 40 1 8.6574 -3.6388 0.8527 41 1 9.7435 0.1925 0.2929 42 1 7.8690 -0.1260 -1.4610 43 1 7.4566 -1.7226 -2.1377 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595844556.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:03 Heat of formation + Delta-G solvation = -45.303907 kcal Electronic energy + Delta-G solvation = -23000.717998 eV Core-core repulsion = 19661.086264 eV Total energy + Delta-G solvation = -3339.631734 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.12750 -39.04291 -36.96732 -35.55219 -33.74868 -32.51902 -31.54606 -29.69536 -28.73228 -26.82883 -24.72298 -24.59615 -22.17675 -21.81611 -20.56043 -20.30148 -19.04268 -17.79093 -17.06954 -16.52188 -15.62382 -15.54960 -15.10248 -14.84504 -14.13958 -13.84741 -13.82569 -13.70037 -13.65420 -13.42268 -13.05873 -12.83992 -12.41438 -12.33099 -12.13922 -11.62561 -11.55140 -11.45197 -11.27129 -10.92587 -10.77867 -10.56879 -10.42153 -10.08399 -9.91676 -9.61653 -9.39141 -9.18126 -8.61617 -8.48559 -8.42868 -7.75561 -6.31756 -4.03719 2.95293 3.21160 3.47287 3.48666 3.55319 3.68092 3.86971 4.19141 4.54558 4.57655 4.63026 4.75714 5.03655 5.09444 5.22660 5.26886 5.37107 5.39648 5.43961 5.45275 5.48034 5.59342 5.60820 5.75148 5.81469 5.94270 6.10548 6.25704 6.41723 6.53771 6.68326 6.74397 6.82149 6.86390 6.98953 7.08460 7.40131 7.53016 7.61190 8.25471 8.41683 8.47152 8.91547 9.07970 9.69952 11.07538 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029928 B = 0.003844 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.365827 B = 7281.717464 C = 7865.451738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.350 6.350 3 C 0.023 3.977 4 C -0.143 4.143 5 C -0.211 4.211 6 C 0.138 3.862 7 H 0.143 0.857 8 N -0.719 5.719 9 C 0.704 3.296 10 O -0.589 6.589 11 N -0.623 5.623 12 C 0.117 3.883 13 C -0.136 4.136 14 C -0.104 4.104 15 C 0.020 3.980 16 H 0.039 0.961 17 C -0.598 4.598 18 H 0.050 0.950 19 C 0.022 3.978 20 N -0.904 5.904 21 Si 1.068 2.932 22 H -0.288 1.288 23 H -0.283 1.283 24 H -0.288 1.288 25 C 0.134 3.866 26 H 0.086 0.914 27 H 0.042 0.958 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.399 0.601 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.048 0.952 40 H 0.054 0.946 41 H 0.273 0.727 42 H 0.084 0.916 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.798 -0.707 2.022 20.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.268 6.268 3 C -0.019 4.019 4 C -0.201 4.201 5 C -0.250 4.250 6 C 0.029 3.971 7 H 0.161 0.839 8 N -0.375 5.375 9 C 0.406 3.594 10 O -0.467 6.467 11 N -0.359 5.359 12 C -0.007 4.007 13 C -0.174 4.174 14 C -0.142 4.142 15 C 0.000 4.000 16 H 0.057 0.943 17 C -0.637 4.637 18 H 0.069 0.931 19 C -0.184 4.184 20 N -0.539 5.539 21 Si 0.896 3.104 22 H -0.214 1.214 23 H -0.208 1.208 24 H -0.215 1.215 25 C 0.013 3.987 26 H 0.104 0.896 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.119 0.881 33 H 0.124 0.876 34 H 0.237 0.763 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.102 0.898 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -18.752 0.541 1.484 18.818 hybrid contribution -2.090 -1.052 0.568 2.408 sum -20.842 -0.511 2.052 20.949 Atomic orbital electron populations 1.22801 0.81110 1.02666 1.00216 1.87877 1.19848 1.24681 1.94397 1.22628 0.93490 0.85547 1.00245 1.21803 1.00157 0.97362 1.00732 1.24296 1.04377 1.02760 0.93571 1.21787 0.86204 0.89432 0.99646 0.83906 1.44575 1.14387 1.11107 1.67387 1.15913 0.80510 0.84388 0.78603 1.90900 1.67473 1.32007 1.56330 1.47756 1.21321 1.05398 1.61406 1.21510 0.95364 0.86924 0.96889 1.21989 0.97401 0.99531 0.98467 1.21590 0.93804 1.00111 0.98649 1.19222 0.93472 0.91837 0.95468 0.94310 1.21824 0.97652 1.09853 1.34342 0.93142 1.25872 1.03642 0.92592 0.96271 1.70775 1.27933 1.23604 1.31612 0.83564 0.75202 0.75697 0.75907 1.21424 1.20827 1.21488 1.22276 0.78150 1.02621 0.95678 0.89568 0.93906 0.93420 0.91044 0.91157 0.90721 0.88067 0.87611 0.76350 0.91882 0.91923 0.92200 0.92088 0.93366 0.92723 0.91475 0.89790 0.93226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.05 101.05 1.02 1.23 16 2 O -0.35 -3.97 10.39 -35.23 -0.37 -4.34 16 3 C 0.02 0.25 3.03 -90.58 -0.27 -0.03 16 4 C -0.14 -1.18 9.49 37.16 0.35 -0.83 16 5 C -0.21 -2.30 10.05 -26.70 -0.27 -2.57 16 6 C 0.14 1.91 6.13 -67.93 -0.42 1.49 16 7 H 0.14 2.13 7.43 -51.93 -0.39 1.75 16 8 N -0.72 -11.52 5.38 -58.67 -0.32 -11.84 16 9 C 0.70 14.52 8.29 -86.92 -0.72 13.80 16 10 O -0.59 -14.57 15.35 5.29 0.08 -14.49 16 11 N -0.62 -12.56 2.97 -178.50 -0.53 -13.09 16 12 C 0.12 1.86 6.39 -3.72 -0.02 1.84 16 13 C -0.14 -2.25 6.08 -26.61 -0.16 -2.41 16 14 C -0.10 -2.12 5.15 -26.69 -0.14 -2.26 16 15 C 0.02 0.49 2.13 -91.65 -0.20 0.30 16 16 H 0.04 1.08 6.41 -51.93 -0.33 0.75 16 17 C -0.60 -16.64 8.31 -34.44 -0.29 -16.92 16 18 H 0.05 1.38 7.82 -52.49 -0.41 0.97 16 19 C 0.02 0.64 5.45 -17.82 -0.10 0.54 16 20 N -0.90 -27.97 13.63 55.43 0.76 -27.22 16 21 Si 1.07 25.37 29.91 -169.99 -5.08 20.29 16 22 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 25 C 0.13 3.19 5.71 -3.71 -0.02 3.17 16 26 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.32 6.47 -51.93 -0.34 -0.02 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.47 5.78 -51.93 -0.30 0.17 16 31 H 0.07 0.53 7.90 -51.93 -0.41 0.12 16 32 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.11 0.97 8.05 -51.93 -0.42 0.55 16 34 H 0.40 5.67 5.88 -40.82 -0.24 5.43 16 35 H 0.06 0.84 5.65 -51.93 -0.29 0.54 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.27 8.60 6.55 -40.82 -0.27 8.34 16 42 H 0.08 2.31 7.00 -51.93 -0.36 1.95 16 43 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 341.57 15.07 5.15 5.15 Total: -1.00 -33.56 341.57 -8.33 -41.89 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -6.78 Total: 6.30 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -1.24 Total: -2.65 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: -0.09 Total: -52.14 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.28 Total: -18.83 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -5.08 Total: 20.29 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.56 -8.33 -41.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595844556.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.419 kcal (2) G-P(sol) polarization free energy of solvation -33.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds