Wall clock time and date at job start Tue Mar 31 2020 05:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00156 * 2 1 4 4 C 1.53002 * 115.54823 * 325.66744 * 3 2 1 5 5 C 1.53072 * 117.53648 * 111.38836 * 3 2 1 6 6 C 1.52997 * 59.98753 * 107.46655 * 5 3 2 7 7 H 1.09004 * 117.49317 * 107.49669 * 6 5 3 8 8 N 1.46502 * 117.50181 * 252.49973 * 6 5 3 9 9 C 1.34770 * 119.99720 * 223.74706 * 8 6 5 10 10 O 1.21584 * 120.00531 * 4.98401 * 9 8 6 11 11 N 1.34779 * 119.99633 * 184.98299 * 9 8 6 12 12 C 1.46920 * 120.63326 * 354.64611 * 11 9 8 13 13 C 1.53188 * 108.77704 * 233.62994 * 12 11 9 14 14 C 1.53044 * 109.30824 * 305.36082 * 13 12 11 15 15 C 1.53035 * 109.53802 * 61.36874 * 14 13 12 16 16 H 1.08999 * 109.52691 * 58.59991 * 15 14 13 17 17 C 1.50705 * 109.49857 * 178.68229 * 15 14 13 18 18 H 1.07999 * 119.99735 * 34.68245 * 17 15 14 19 19 C 1.37879 * 119.99713 * 214.67992 * 17 15 14 20 20 N 1.31509 * 120.00435 * 354.80337 * 19 17 15 21 21 Si 1.86804 * 119.99575 * 174.80140 * 19 17 15 22 22 H 1.48498 * 109.47270 * 60.00255 * 21 19 17 23 23 H 1.48502 * 109.46812 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47181 * 299.99890 * 21 19 17 25 25 C 1.46927 * 120.62768 * 174.66198 * 11 9 8 26 26 H 1.08996 * 109.46911 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46422 * 300.00232 * 1 2 3 28 28 H 1.08995 * 109.47099 * 60.00056 * 1 2 3 29 29 H 1.08999 * 109.47594 * 274.32935 * 4 3 2 30 30 H 1.09002 * 109.47083 * 34.33736 * 4 3 2 31 31 H 1.09004 * 109.46597 * 154.32709 * 4 3 2 32 32 H 1.09002 * 117.50880 * 359.97438 * 5 3 2 33 33 H 1.08995 * 117.49336 * 214.95690 * 5 3 2 34 34 H 0.97000 * 119.99712 * 43.75028 * 8 6 5 35 35 H 1.09004 * 109.58648 * 353.41271 * 12 11 9 36 36 H 1.08999 * 109.59119 * 113.69442 * 12 11 9 37 37 H 1.08996 * 109.50086 * 65.30879 * 13 12 11 38 38 H 1.08999 * 109.50118 * 185.41280 * 13 12 11 39 39 H 1.08993 * 109.46136 * 301.34239 * 14 13 12 40 40 H 1.09004 * 109.45649 * 181.38607 * 14 13 12 41 41 H 0.97006 * 119.99966 * 4.95951 * 20 19 17 42 42 H 1.09001 * 109.59135 * 6.58456 * 25 11 9 43 43 H 1.08999 * 109.58694 * 246.15770 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.2373 2.3719 -0.7785 5 6 2.7503 1.7506 1.2638 6 6 3.5375 1.3988 -0.0001 7 1 3.9914 2.2198 -0.5550 8 7 4.2920 0.1430 0.0005 9 6 5.5464 0.1103 -0.4912 10 8 6.0852 1.1390 -0.8514 11 7 6.2036 -1.0627 -0.5836 12 6 5.6132 -2.2960 -0.0458 13 6 6.6176 -2.9474 0.9099 14 6 7.9484 -3.1529 0.1824 15 6 8.5073 -1.7970 -0.2549 16 1 8.6434 -1.1601 0.6191 17 6 9.8332 -1.9976 -0.9425 18 1 10.0002 -2.8765 -1.5476 19 6 10.8330 -1.0591 -0.7992 20 7 10.5971 0.0589 -0.1480 21 14 12.5228 -1.3756 -1.5300 22 1 12.4019 -1.5492 -2.9998 23 1 13.4119 -0.2223 -1.2388 24 1 13.0982 -2.6069 -0.9316 25 6 7.5242 -1.1324 -1.2238 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.5280 2.3374 -1.8285 30 1 0.1676 2.1816 -0.6912 31 1 1.4657 3.3565 -0.3704 32 1 2.7936 1.0477 2.0959 33 1 2.6861 2.8029 1.5402 34 1 3.8886 -0.6650 0.3546 35 1 4.6970 -2.0572 0.4943 36 1 5.3874 -2.9800 -0.8639 37 1 6.7712 -2.2999 1.7731 38 1 6.2318 -3.9114 1.2415 39 1 7.7897 -3.7803 -0.6946 40 1 8.6574 -3.6388 0.8527 41 1 9.7435 0.1925 0.2929 42 1 7.8690 -0.1260 -1.4610 43 1 7.4566 -1.7226 -2.1377 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595844556.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:02 Heat of formation + Delta-G solvation = -68.522932 kcal Electronic energy + Delta-G solvation = -23001.724851 eV Core-core repulsion = 19661.086264 eV Total energy + Delta-G solvation = -3340.638587 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.56429 -40.11947 -38.58109 -36.61577 -35.63799 -34.06865 -33.08466 -31.47225 -29.52393 -27.48018 -26.65431 -26.29290 -23.70698 -23.21483 -21.90604 -21.42766 -20.59684 -19.31063 -18.65526 -18.10032 -16.75246 -16.48016 -16.41365 -16.05368 -15.85642 -15.63354 -15.33764 -15.13295 -14.77726 -14.62808 -14.34946 -14.12904 -13.90258 -13.37935 -13.34599 -13.04492 -12.92679 -12.65483 -12.51892 -12.27971 -12.23917 -11.98826 -11.92008 -11.75568 -11.71300 -11.30729 -11.11793 -10.61973 -10.51572 -10.27422 -9.90808 -9.35496 -8.62422 -6.33851 1.51877 1.54604 1.63374 1.80509 1.95246 2.50059 2.59006 2.80544 2.88312 3.21010 3.65332 3.71553 3.92939 3.97152 4.03207 4.10871 4.36359 4.41426 4.50976 4.56322 4.57207 4.63735 4.69064 4.71390 4.77595 4.80701 4.84931 4.89575 4.90492 4.97710 5.08506 5.14701 5.15227 5.43644 5.48580 5.54603 5.64528 5.94318 6.11860 6.20738 6.21810 6.61926 6.94804 7.48961 7.49898 8.76082 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029928 B = 0.003844 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.365827 B = 7281.717464 C = 7865.451738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.372 6.372 3 C 0.046 3.954 4 C -0.144 4.144 5 C -0.194 4.194 6 C 0.091 3.909 7 H 0.122 0.878 8 N -0.699 5.699 9 C 0.697 3.303 10 O -0.642 6.642 11 N -0.627 5.627 12 C 0.113 3.887 13 C -0.127 4.127 14 C -0.098 4.098 15 C 0.016 3.984 16 H -0.002 1.002 17 C -0.605 4.605 18 H 0.055 0.945 19 C -0.035 4.035 20 N -0.937 5.937 21 Si 1.116 2.884 22 H -0.270 1.270 23 H -0.290 1.290 24 H -0.265 1.265 25 C 0.152 3.848 26 H 0.099 0.901 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.126 0.874 34 H 0.410 0.590 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.045 0.955 38 H 0.107 0.893 39 H 0.060 0.940 40 H 0.048 0.952 41 H 0.253 0.747 42 H 0.033 0.967 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.375 -2.596 2.287 23.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.291 6.291 3 C 0.004 3.996 4 C -0.201 4.201 5 C -0.233 4.233 6 C -0.016 4.016 7 H 0.140 0.860 8 N -0.355 5.355 9 C 0.399 3.601 10 O -0.524 6.524 11 N -0.362 5.362 12 C -0.009 4.009 13 C -0.165 4.165 14 C -0.136 4.136 15 C -0.004 4.004 16 H 0.017 0.983 17 C -0.643 4.643 18 H 0.073 0.927 19 C -0.233 4.233 20 N -0.574 5.574 21 Si 0.937 3.063 22 H -0.195 1.195 23 H -0.215 1.215 24 H -0.190 1.190 25 C 0.028 3.972 26 H 0.117 0.883 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.106 0.894 32 H 0.121 0.879 33 H 0.144 0.856 34 H 0.249 0.751 35 H 0.114 0.886 36 H 0.103 0.897 37 H 0.064 0.936 38 H 0.125 0.875 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.052 0.948 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -21.419 -1.399 1.777 21.539 hybrid contribution -1.416 -0.492 0.496 1.579 sum -22.835 -1.891 2.274 23.026 Atomic orbital electron populations 1.23040 0.79024 1.04016 1.01350 1.87831 1.22067 1.24736 1.94470 1.22615 0.91134 0.86227 0.99638 1.21872 1.01058 0.97117 1.00019 1.24349 1.02144 1.04024 0.92764 1.22000 0.88319 0.88386 1.02937 0.86002 1.44329 1.12603 1.12497 1.66086 1.16128 0.81679 0.83688 0.78636 1.90858 1.68970 1.33942 1.58629 1.47641 1.20119 1.07043 1.61430 1.21846 0.96029 0.85247 0.97740 1.21935 0.95363 1.01688 0.97503 1.21454 0.95792 0.96911 0.99426 1.19198 0.93328 0.93959 0.93902 0.98347 1.22266 0.98993 1.09415 1.33662 0.92664 1.27407 1.07734 0.92026 0.96127 1.70919 1.27043 1.25431 1.34049 0.82968 0.70821 0.76159 0.76324 1.19489 1.21544 1.18981 1.21661 0.80175 0.99512 0.95817 0.88259 0.92661 0.92334 0.91602 0.88962 0.89445 0.87898 0.85630 0.75063 0.88636 0.89657 0.93578 0.87498 0.92142 0.93352 0.93608 0.94803 0.92601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.05 113.37 1.14 1.39 16 2 O -0.37 -7.44 10.39 -148.98 -1.55 -8.98 16 3 C 0.05 0.90 3.03 -10.77 -0.03 0.87 16 4 C -0.14 -2.02 9.49 71.98 0.68 -1.34 16 5 C -0.19 -3.89 10.05 30.62 0.31 -3.59 16 6 C 0.09 2.51 6.13 44.99 0.28 2.78 16 7 H 0.12 3.85 7.43 -2.38 -0.02 3.84 16 8 N -0.70 -22.24 5.38 -457.81 -2.46 -24.70 16 9 C 0.70 29.70 8.29 179.06 1.49 31.19 16 10 O -0.64 -33.93 15.35 -3.98 -0.06 -33.99 16 11 N -0.63 -25.58 2.97 -836.92 -2.49 -28.07 16 12 C 0.11 3.32 6.39 86.36 0.55 3.87 16 13 C -0.13 -3.89 6.08 30.67 0.19 -3.70 16 14 C -0.10 -3.92 5.15 30.62 0.16 -3.76 16 15 C 0.02 0.82 2.13 -11.46 -0.02 0.80 16 16 H 0.00 -0.10 6.41 -2.39 -0.02 -0.12 16 17 C -0.60 -34.44 8.31 25.60 0.21 -34.23 16 18 H 0.06 3.03 7.82 -2.91 -0.02 3.00 16 19 C -0.03 -2.07 5.45 84.66 0.46 -1.60 16 20 N -0.94 -61.07 13.63 21.45 0.29 -60.78 16 21 Si 1.12 51.67 29.91 68.60 2.05 53.72 16 22 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 23 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 24 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 25 C 0.15 7.53 5.71 86.36 0.49 8.02 16 26 H 0.10 0.93 8.14 -2.39 -0.02 0.92 16 27 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.06 0.58 6.47 -2.39 -0.02 0.56 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.09 0.91 5.78 -2.39 -0.01 0.89 16 31 H 0.09 1.02 7.90 -2.38 -0.02 1.00 16 32 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.13 2.01 8.05 -2.39 -0.02 1.99 16 34 H 0.41 10.91 5.88 -92.71 -0.55 10.36 16 35 H 0.10 2.20 5.65 -2.39 -0.01 2.19 16 36 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 41 H 0.25 17.16 6.55 -92.70 -0.61 16.55 16 42 H 0.03 2.00 7.00 -2.39 -0.02 1.98 16 43 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -79.07 341.57 2.30 -76.76 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 0.62 Total: 25.33 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: 5.90 Total: 0.71 kcal Atomic # 7 Polarization: -108.89 SS G_CDS: -4.66 Total: -113.55 kcal Atomic # 8 Polarization: -41.37 SS G_CDS: -1.61 Total: -42.97 kcal Atomic # 14 Polarization: 51.67 SS G_CDS: 2.05 Total: 53.72 kcal Total: -79.07 2.30 -76.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595844556.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.238 kcal (2) G-P(sol) polarization free energy of solvation -79.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds