Wall clock time and date at job start Tue Mar 31 2020 05:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 C 1.53003 * 109.47015 * 64.99921 * 4 2 1 6 6 N 1.46500 * 109.47377 * 180.02562 * 5 4 2 7 7 C 1.46505 * 119.99900 * 270.00158 * 6 5 4 8 8 C 1.50700 * 109.46850 * 89.99903 * 7 6 5 9 9 H 1.08001 * 120.00098 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99855 * 179.97438 * 8 7 6 11 11 N 1.31521 * 119.99945 * 0.02562 * 10 8 7 12 12 Si 1.86792 * 120.00047 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47053 * 60.00195 * 12 10 8 14 14 H 1.48504 * 109.47271 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47294 * 300.00201 * 12 10 8 16 16 C 1.34771 * 120.00047 * 89.99967 * 6 5 4 17 17 O 1.21287 * 120.00145 * 0.02562 * 16 6 5 18 18 C 1.50702 * 120.00058 * 179.97438 * 16 6 5 19 19 C 1.53004 * 109.47102 * 179.97438 * 18 16 6 20 20 H 1.08997 * 112.41627 * 315.03032 * 19 18 16 21 21 C 1.52881 * 113.05135 * 185.62631 * 19 18 16 22 22 C 1.50563 * 82.45332 * 244.55082 * 21 19 18 23 23 O 1.21282 * 131.84290 * 179.97438 * 22 21 19 24 24 N 1.34599 * 96.30808 * 0.02562 * 22 21 19 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 29 29 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 30 30 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 32 32 H 1.08994 * 109.47465 * 185.00197 * 4 2 1 33 33 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 34 34 H 1.08994 * 109.47229 * 300.00420 * 5 4 2 35 35 H 1.09000 * 109.46883 * 59.99966 * 5 4 2 36 36 H 1.08998 * 109.46759 * 210.00082 * 7 6 5 37 37 H 1.09004 * 109.47013 * 330.00102 * 7 6 5 38 38 H 0.97001 * 119.99943 * 180.02562 * 11 10 8 39 39 H 1.08989 * 109.47350 * 300.00372 * 18 16 6 40 40 H 1.08996 * 109.46704 * 60.00527 * 18 16 6 41 41 H 1.09004 * 114.37346 * 357.94845 * 21 19 18 42 42 H 1.08996 * 114.37659 * 131.14933 * 21 19 18 43 43 H 0.97004 * 134.66841 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6352 -2.1954 1.1881 6 7 2.1231 -2.8858 2.3846 7 6 3.4514 -3.5039 2.3833 8 6 4.4727 -2.5004 2.8534 9 1 4.1634 -1.5021 3.1255 10 6 5.8020 -2.8569 2.9361 11 7 6.1787 -4.0725 2.6043 12 14 7.0679 -1.6134 3.5195 13 1 6.7290 -1.1705 4.8958 14 1 8.4142 -2.2402 3.5192 15 1 7.0669 -0.4411 2.6079 16 6 1.3499 -2.9524 3.4865 17 8 0.2501 -2.4411 3.4875 18 6 1.8515 -3.6632 4.7171 19 6 0.7888 -3.5926 5.8156 20 1 0.3575 -2.5964 5.9133 21 6 1.2660 -4.1702 7.1482 22 6 0.1788 -5.1753 6.8750 23 8 -0.2071 -6.1399 7.5008 24 7 -0.2209 -4.6462 5.7037 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 3.1263 -0.6442 1.2952 33 1 1.6054 -0.2617 2.1370 34 1 0.5490 -2.2723 1.1422 35 1 2.0698 -2.6549 0.3004 36 1 3.4524 -4.3642 3.0525 37 1 3.6998 -3.8291 1.3730 38 1 7.1139 -4.3235 2.6628 39 1 2.0568 -4.7060 4.4760 40 1 2.7663 -3.1840 5.0658 41 1 2.2752 -4.5815 7.1246 42 1 1.0795 -3.5285 8.0092 43 1 -0.9022 -4.8713 5.0509 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597144626.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:50 Heat of formation + Delta-G solvation = -87.298585 kcal Electronic energy + Delta-G solvation = -22876.654318 eV Core-core repulsion = 19535.201557 eV Total energy + Delta-G solvation = -3341.452760 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.04993 -40.54782 -37.98144 -37.45067 -36.31348 -34.42195 -32.03336 -30.34442 -29.29909 -28.64377 -27.98313 -24.90125 -24.72466 -22.94320 -20.86810 -20.74704 -19.93498 -18.58405 -18.42209 -17.65123 -17.48358 -17.27378 -16.47812 -16.21138 -15.92936 -15.82388 -14.87803 -14.59023 -14.41667 -14.35008 -14.03459 -13.68255 -13.63811 -13.30401 -13.17387 -12.98778 -12.91581 -12.73530 -12.60461 -12.54022 -12.35684 -12.23228 -12.02879 -11.82747 -11.56323 -11.46707 -11.28455 -11.12826 -10.70116 -10.48248 -10.22583 -9.39667 -8.15096 -6.28408 1.46589 1.48769 1.50284 1.54892 1.81004 2.32792 2.43151 2.49420 3.01920 3.16127 3.58341 3.84682 3.94369 4.02100 4.08510 4.12864 4.28733 4.42680 4.62753 4.65220 4.70795 4.78237 4.81171 4.84108 4.87568 4.94818 4.98704 5.04544 5.14227 5.16003 5.23205 5.25772 5.37430 5.39019 5.52686 5.53713 5.73080 5.89333 6.00429 6.11082 6.63161 6.87512 7.30761 7.34876 7.46964 8.90230 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.010241 B = 0.006302 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.579733 B = 4442.155350 C = 6563.108255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.092 4.092 3 C -0.142 4.142 4 C -0.115 4.115 5 C 0.120 3.880 6 N -0.600 5.600 7 C 0.251 3.749 8 C -0.535 4.535 9 H 0.058 0.942 10 C 0.024 3.976 11 N -0.921 5.921 12 Si 0.949 3.051 13 H -0.266 1.266 14 H -0.288 1.288 15 H -0.276 1.276 16 C 0.512 3.488 17 O -0.589 6.589 18 C -0.139 4.139 19 C 0.146 3.854 20 H 0.107 0.893 21 C -0.150 4.150 22 C 0.510 3.490 23 O -0.577 6.577 24 N -0.727 5.727 25 H 0.050 0.950 26 H 0.068 0.932 27 H 0.046 0.954 28 H 0.073 0.927 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.044 0.956 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.033 0.967 37 H 0.014 0.986 38 H 0.266 0.734 39 H 0.095 0.905 40 H 0.122 0.878 41 H 0.138 0.862 42 H 0.152 0.848 43 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.793 6.436 0.075 9.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.111 4.111 3 C -0.200 4.200 4 C -0.154 4.154 5 C -0.003 4.003 6 N -0.329 5.329 7 C 0.130 3.870 8 C -0.573 4.573 9 H 0.077 0.923 10 C -0.176 4.176 11 N -0.561 5.561 12 Si 0.775 3.225 13 H -0.190 1.190 14 H -0.214 1.214 15 H -0.202 1.202 16 C 0.302 3.698 17 O -0.472 6.472 18 C -0.179 4.179 19 C 0.041 3.959 20 H 0.125 0.875 21 C -0.189 4.189 22 C 0.297 3.703 23 O -0.456 6.456 24 N -0.386 5.386 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.091 0.909 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.051 0.949 37 H 0.032 0.968 38 H 0.075 0.925 39 H 0.113 0.887 40 H 0.140 0.860 41 H 0.156 0.844 42 H 0.170 0.830 43 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -7.428 6.050 0.315 9.585 hybrid contribution 0.683 0.148 -0.430 0.820 sum -6.745 6.198 -0.115 9.161 Atomic orbital electron populations 1.21822 0.94606 1.01610 1.01767 1.21067 0.96299 0.96536 0.97223 1.21793 1.00687 0.95422 1.02057 1.21857 1.00683 0.94823 0.98014 1.21457 0.99188 0.92596 0.87066 1.48264 1.17903 1.53771 1.13006 1.19120 0.77789 0.93077 0.97022 1.21606 0.92260 0.98642 1.44809 0.92339 1.25582 1.00114 0.96645 0.95287 1.70006 1.17719 1.19626 1.48727 0.85740 0.78167 0.79243 0.79356 1.19033 1.21369 1.20173 1.20811 0.84087 0.79776 0.85149 1.90586 1.22070 1.50506 1.84060 1.21966 1.00658 1.02478 0.92841 1.21914 0.86703 0.93892 0.93415 0.87465 1.23692 1.00331 0.96302 0.98625 1.22655 0.83550 0.83702 0.80410 1.90678 1.65957 1.30742 1.58273 1.48046 1.36610 1.30667 1.23265 0.93100 0.91307 0.93496 0.90856 0.93102 0.93310 0.91163 0.92701 0.93724 0.90766 0.91150 0.94915 0.96755 0.92512 0.88670 0.86025 0.84425 0.83023 0.74151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.95 71.98 0.64 -2.62 16 2 C -0.09 -2.36 2.92 -10.79 -0.03 -2.40 16 3 C -0.14 -3.27 9.19 71.98 0.66 -2.61 16 4 C -0.12 -3.76 5.01 30.60 0.15 -3.61 16 5 C 0.12 4.11 5.21 86.38 0.45 4.56 16 6 N -0.60 -22.99 2.46 -826.14 -2.03 -25.02 16 7 C 0.25 11.02 5.01 85.63 0.43 11.45 16 8 C -0.53 -25.31 8.82 25.60 0.23 -25.09 16 9 H 0.06 2.79 7.42 -2.91 -0.02 2.77 16 10 C 0.02 1.18 5.46 84.65 0.46 1.64 16 11 N -0.92 -48.26 13.29 21.45 0.28 -47.97 16 12 Si 0.95 39.25 29.54 68.60 2.03 41.28 16 13 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 14 H -0.29 -11.94 7.11 99.48 0.71 -11.23 16 15 H -0.28 -11.36 7.11 99.48 0.71 -10.66 16 16 C 0.51 18.52 7.67 87.66 0.67 19.19 16 17 O -0.59 -22.73 15.35 -3.05 -0.05 -22.77 16 18 C -0.14 -4.16 4.14 29.85 0.12 -4.03 16 19 C 0.15 3.60 3.72 37.03 0.14 3.73 16 20 H 0.11 2.62 7.70 -2.39 -0.02 2.61 16 21 C -0.15 -2.98 8.15 29.77 0.24 -2.74 16 22 C 0.51 14.48 9.38 79.69 0.75 15.23 16 23 O -0.58 -21.26 18.03 -3.03 -0.05 -21.31 16 24 N -0.73 -19.28 7.45 -513.91 -3.83 -23.10 16 25 H 0.05 1.23 6.56 -2.39 -0.02 1.21 16 26 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 27 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 28 H 0.07 1.80 8.14 -2.39 -0.02 1.79 16 29 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.05 2.04 7.26 -2.39 -0.02 2.02 16 33 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.07 2.50 5.84 -2.39 -0.01 2.48 16 35 H 0.07 2.34 7.89 -2.39 -0.02 2.32 16 36 H 0.03 1.48 6.44 -2.39 -0.02 1.46 16 37 H 0.01 0.69 7.89 -2.38 -0.02 0.67 16 38 H 0.27 13.39 8.31 -92.71 -0.77 12.62 16 39 H 0.10 2.91 7.40 -2.39 -0.02 2.89 16 40 H 0.12 3.69 8.00 -2.39 -0.02 3.67 16 41 H 0.14 2.43 8.00 -2.38 -0.02 2.41 16 42 H 0.15 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.42 10.71 8.96 -92.71 -0.83 9.88 16 Total: -1.00 -60.89 353.88 1.44 -59.45 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: 0.17 Total: 26.74 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: 4.92 Total: 12.71 kcal Atomic # 7 Polarization: -90.52 SS G_CDS: -5.57 Total: -96.10 kcal Atomic # 8 Polarization: -43.98 SS G_CDS: -0.10 Total: -44.08 kcal Atomic # 14 Polarization: 39.25 SS G_CDS: 2.03 Total: 41.28 kcal Total: -60.89 1.44 -59.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597144626.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.849 kcal (2) G-P(sol) polarization free energy of solvation -60.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds