Wall clock time and date at job start Tue Mar 31 2020 05:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53775 * 113.61140 * 2 1 4 4 C 1.53784 * 87.08067 * 220.01768 * 3 2 1 5 5 C 1.52997 * 113.61364 * 139.98254 * 4 3 2 6 6 N 1.46496 * 109.46892 * 174.99757 * 5 4 3 7 7 C 1.34783 * 120.00035 * 179.97438 * 6 5 4 8 8 O 1.21592 * 119.99766 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00306 * 180.02562 * 7 6 5 10 10 C 1.47426 * 125.64489 * 0.04495 * 9 7 6 11 11 C 1.54914 * 104.82992 * 204.09098 * 10 9 7 12 12 C 1.55405 * 101.66697 * 323.07703 * 11 10 9 13 13 O 1.42895 * 110.69130 * 277.05126 * 12 11 10 14 14 C 1.50696 * 110.85075 * 153.69831 * 12 11 10 15 15 H 1.07999 * 120.00069 * 5.09169 * 14 12 11 16 16 C 1.37874 * 119.99892 * 185.08365 * 14 12 11 17 17 N 1.31514 * 120.00018 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00287 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.46979 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47253 * 120.00170 * 18 16 14 21 21 H 1.48494 * 109.47309 * 240.00539 * 18 16 14 22 22 C 1.47018 * 125.64993 * 180.02562 * 9 7 6 23 23 C 1.53771 * 87.08010 * 25.43392 * 4 3 2 24 24 H 1.09004 * 109.47037 * 60.00115 * 1 2 3 25 25 H 1.08999 * 109.46883 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47441 * 299.99813 * 1 2 3 27 27 H 1.08999 * 112.84770 * 131.19840 * 2 1 3 28 28 H 1.09004 * 113.61746 * 105.47101 * 3 2 1 29 29 H 1.09001 * 113.69238 * 334.57868 * 3 2 1 30 30 H 1.08998 * 113.61326 * 270.79716 * 4 3 2 31 31 H 1.09002 * 109.47175 * 54.99897 * 5 4 3 32 32 H 1.08996 * 109.47359 * 294.99841 * 5 4 3 33 33 H 0.96998 * 120.00322 * 0.02562 * 6 5 4 34 34 H 1.08999 * 110.36956 * 322.93474 * 10 9 7 35 35 H 1.09003 * 110.36599 * 85.25378 * 10 9 7 36 36 H 1.09000 * 111.00339 * 81.07133 * 11 10 9 37 37 H 1.09000 * 111.00165 * 204.88167 * 11 10 9 38 38 H 0.96706 * 113.99347 * 174.82523 * 13 12 11 39 39 H 0.97004 * 120.00211 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.88241 * 298.39592 * 22 9 7 41 41 H 1.09000 * 109.88049 * 59.40721 * 22 9 7 42 42 H 1.09007 * 113.61585 * 89.11607 * 23 4 3 43 43 H 1.09000 * 113.61750 * 220.01745 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 3.1924 0.8661 -0.9876 5 6 3.5461 1.8476 -2.1067 6 7 4.6298 1.2908 -2.9201 7 6 5.1089 1.9854 -3.9710 8 8 4.6420 3.0745 -4.2437 9 7 6.1055 1.4729 -4.7197 10 6 6.7600 0.1698 -4.5031 11 6 8.1562 0.3134 -5.1587 12 6 7.8301 1.1821 -6.4054 13 8 7.3464 0.3680 -7.4755 14 6 9.0375 1.9729 -6.8387 15 1 9.9867 1.8229 -6.3458 16 6 8.9304 2.8879 -7.8644 17 7 7.7744 3.0709 -8.4644 18 14 10.4271 3.8678 -8.4021 19 1 11.5972 3.4781 -7.5749 20 1 10.7160 3.5861 -9.8312 21 1 10.1582 5.3178 -8.2280 22 6 6.7198 2.1207 -5.8878 23 6 2.1461 -0.1838 -1.3970 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.9533 -0.6616 0.7558 28 1 2.5650 1.7024 0.9626 29 1 1.4954 2.1714 -0.4285 30 1 4.0718 0.4423 -0.5027 31 1 3.8676 2.7940 -1.6718 32 1 2.6703 2.0149 -2.7336 33 1 5.0020 0.4218 -2.7028 34 1 6.8605 -0.0317 -3.4366 35 1 6.1929 -0.6248 -4.9883 36 1 8.8483 0.8309 -4.4945 37 1 8.5522 -0.6590 -5.4514 38 1 7.0539 0.8688 -8.2493 39 1 7.6991 3.7144 -9.1863 40 1 5.9704 2.2717 -6.6648 41 1 7.1502 3.0789 -5.5967 42 1 1.4946 0.1421 -2.2079 43 1 2.5651 -1.1764 -1.5623 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598659566.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:09 Heat of formation + Delta-G solvation = -68.627536 kcal Electronic energy + Delta-G solvation = -22619.574094 eV Core-core repulsion = 19278.930971 eV Total energy + Delta-G solvation = -3340.643123 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.92424 -39.14529 -37.30779 -34.25129 -34.15684 -32.20706 -30.65537 -29.73707 -27.82262 -26.54252 -25.87892 -24.65671 -22.56590 -21.25696 -19.94962 -19.59545 -19.13221 -17.50600 -17.01284 -16.12845 -15.71785 -15.22275 -14.97488 -14.53571 -14.28677 -14.07664 -13.79461 -13.44803 -13.14067 -12.91498 -12.81929 -12.65998 -12.47869 -12.12761 -11.69508 -11.62067 -11.42912 -11.21068 -11.04267 -10.84132 -10.78446 -10.63905 -10.44928 -10.41442 -10.32201 -10.14518 -9.55611 -9.29168 -8.76456 -8.66301 -8.29215 -7.71309 -6.25809 -4.34279 3.16553 3.23271 3.30999 3.34324 3.79159 4.26353 4.30287 4.38489 4.44458 4.51350 4.68916 5.01938 5.06566 5.18807 5.29533 5.40052 5.44297 5.48500 5.57441 5.57966 5.69414 5.73957 5.77794 5.82327 5.88158 5.95394 6.03361 6.11682 6.14032 6.32121 6.52758 6.74241 6.83789 6.92025 7.03020 7.29904 7.34978 7.69028 7.75678 8.06568 8.57597 8.70126 9.18016 9.31740 9.40306 10.82056 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038452 B = 0.003261 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.004486 B = 8585.294918 C = 8826.225550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C -0.126 4.126 4 C -0.124 4.124 5 C 0.151 3.849 6 N -0.751 5.751 7 C 0.714 3.286 8 O -0.598 6.598 9 N -0.631 5.631 10 C 0.104 3.896 11 C -0.116 4.116 12 C 0.248 3.752 13 O -0.585 6.585 14 C -0.536 4.536 15 H 0.067 0.933 16 C 0.070 3.930 17 N -0.893 5.893 18 Si 0.903 3.097 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.123 3.877 23 C -0.131 4.131 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.392 0.608 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.382 0.618 39 H 0.269 0.731 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.084 0.916 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.499 -7.175 14.976 19.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.135 4.135 3 C -0.164 4.164 4 C -0.143 4.143 5 C 0.027 3.973 6 N -0.408 5.408 7 C 0.416 3.584 8 O -0.478 6.478 9 N -0.368 5.368 10 C -0.020 4.020 11 C -0.154 4.154 12 C 0.207 3.793 13 O -0.394 6.394 14 C -0.574 4.574 15 H 0.085 0.915 16 C -0.134 4.134 17 N -0.532 5.532 18 Si 0.731 3.269 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 C 0.001 3.999 23 C -0.169 4.169 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.106 0.894 28 H 0.087 0.913 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.226 0.774 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.232 0.768 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.102 0.898 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.850 -6.685 15.072 19.206 hybrid contribution 0.776 0.646 -0.616 1.183 sum -9.075 -6.038 14.456 18.105 Atomic orbital electron populations 1.21726 0.94878 1.01586 1.01794 1.22458 0.95608 0.97503 0.97923 1.22972 0.97516 0.96869 0.99078 1.22764 0.97689 0.97221 0.96596 1.21102 0.89547 0.95930 0.90753 1.45127 1.40644 1.23071 1.31973 1.15547 0.79701 0.83711 0.79475 1.90883 1.62740 1.21263 1.72864 1.47961 1.36060 1.20625 1.32163 1.22221 0.95036 0.86055 0.98640 1.22765 0.94246 1.01013 0.97407 1.19559 0.89824 0.86047 0.83834 1.86104 1.85545 1.38870 1.28848 1.21514 0.95823 1.21654 1.18457 0.91515 1.25080 0.96444 0.96157 0.95670 1.69715 1.23680 1.35699 1.24061 0.86352 0.82462 0.79624 0.78482 1.19617 1.20767 1.20783 1.22841 0.95646 0.97135 0.84320 1.23129 0.97782 0.99109 0.96857 0.92498 0.92777 0.92656 0.89426 0.91345 0.89672 0.88771 0.91965 0.91897 0.77411 0.92693 0.92079 0.90552 0.90646 0.76791 0.92076 0.91957 0.91812 0.89750 0.91515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.71 37.16 0.36 -0.62 16 2 C -0.12 -0.86 4.36 -89.81 -0.39 -1.26 16 3 C -0.13 -1.01 7.20 -25.92 -0.19 -1.20 16 4 C -0.12 -1.14 3.75 -89.81 -0.34 -1.48 16 5 C 0.15 1.96 5.51 -4.05 -0.02 1.93 16 6 N -0.75 -11.43 5.52 -65.23 -0.36 -11.79 16 7 C 0.71 14.84 8.49 -86.91 -0.74 14.10 16 8 O -0.60 -14.89 16.67 5.28 0.09 -14.80 16 9 N -0.63 -13.32 3.33 -176.23 -0.59 -13.90 16 10 C 0.10 1.82 6.57 -2.53 -0.02 1.80 16 11 C -0.12 -2.31 6.24 -24.44 -0.15 -2.46 16 12 C 0.25 6.02 0.86 -89.80 -0.08 5.95 16 13 O -0.58 -14.72 13.08 -35.23 -0.46 -15.19 16 14 C -0.54 -14.10 8.13 -34.44 -0.28 -14.38 16 15 H 0.07 1.73 7.78 -52.49 -0.41 1.32 16 16 C 0.07 1.84 5.28 -17.82 -0.09 1.74 16 17 N -0.89 -24.05 10.98 55.43 0.61 -23.44 16 18 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 19 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 C 0.12 3.04 5.23 -3.07 -0.02 3.03 16 23 C -0.13 -1.13 7.18 -25.92 -0.19 -1.31 16 24 H 0.06 0.41 7.94 -51.93 -0.41 0.00 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.69 8.06 -51.93 -0.42 0.28 16 30 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.88 7.84 -51.93 -0.41 0.47 16 33 H 0.39 4.97 6.95 -40.82 -0.28 4.69 16 34 H 0.05 0.77 7.30 -51.93 -0.38 0.39 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.08 1.47 8.04 -51.93 -0.42 1.05 16 37 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 38 H 0.38 9.86 7.47 45.56 0.34 10.20 16 39 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 40 H 0.06 1.69 7.92 -51.93 -0.41 1.28 16 41 H 0.06 1.73 7.81 -51.93 -0.41 1.33 16 42 H 0.08 0.79 7.72 -51.93 -0.40 0.39 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 345.37 15.07 5.20 5.20 Total: -1.00 -30.38 345.37 -9.21 -39.58 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -6.54 Total: 12.87 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: -2.14 Total: 5.86 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: -0.34 Total: -49.14 kcal Atomic # 8 Polarization: -29.62 SS G_CDS: -0.37 Total: -29.99 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.38 -9.21 -39.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598659566.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.043 kcal (2) G-P(sol) polarization free energy of solvation -30.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds