Wall clock time and date at job start Tue Mar 31 2020 05:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46898 * 110.43955 * 2 1 4 4 C 1.46899 * 110.99791 * 61.09173 * 3 2 1 5 5 C 1.50707 * 109.46999 * 180.02562 * 4 3 2 6 6 O 1.21287 * 119.99622 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00082 * 179.97438 * 5 4 3 8 8 C 1.46502 * 119.99971 * 180.02562 * 7 5 4 9 9 C 1.50701 * 109.46972 * 180.02562 * 8 7 5 10 10 H 1.07998 * 120.00038 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99516 * 180.02562 * 9 8 7 12 12 N 1.31510 * 120.00533 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99578 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47406 * 359.97438 * 13 11 9 15 15 H 1.48507 * 109.46884 * 119.99846 * 13 11 9 16 16 H 1.48502 * 109.47281 * 239.99722 * 13 11 9 17 17 C 1.54817 * 110.48639 * 122.54458 * 2 1 3 18 18 C 1.54998 * 102.12466 * 97.90703 * 17 2 1 19 19 O 1.44478 * 103.44508 * 37.02046 * 18 17 2 20 20 C 1.43746 * 106.98554 * 319.94809 * 19 18 17 21 21 H 1.09001 * 110.00171 * 267.01967 * 20 19 18 22 22 C 1.52999 * 109.87960 * 145.93890 * 20 19 18 23 23 C 1.53001 * 117.49889 * 130.78986 * 22 20 19 24 24 C 1.52996 * 117.49850 * 62.16638 * 22 20 19 25 25 H 1.09010 * 109.46950 * 298.91255 * 1 2 3 26 26 H 1.08997 * 109.47010 * 58.90527 * 1 2 3 27 27 H 1.08996 * 109.47550 * 178.91116 * 1 2 3 28 28 H 1.00893 * 111.00007 * 297.13599 * 3 2 1 29 29 H 1.08997 * 109.47331 * 299.99846 * 4 3 2 30 30 H 1.08996 * 109.47734 * 60.00162 * 4 3 2 31 31 H 0.97000 * 120.00115 * 0.02562 * 7 5 4 32 32 H 1.09005 * 109.47138 * 300.00130 * 8 7 5 33 33 H 1.08996 * 109.46903 * 59.99885 * 8 7 5 34 34 H 0.96998 * 120.00622 * 180.02562 * 12 11 9 35 35 H 1.09002 * 110.90844 * 216.12538 * 17 2 1 36 36 H 1.08997 * 110.90682 * 339.69628 * 17 2 1 37 37 H 1.08997 * 110.61738 * 155.54187 * 18 17 2 38 38 H 1.08997 * 110.62197 * 278.54323 * 18 17 2 39 39 H 1.09004 * 115.54790 * 276.49224 * 22 20 19 40 40 H 1.08998 * 117.50140 * 359.97438 * 23 22 20 41 41 H 1.09001 * 117.49832 * 145.01862 * 23 22 20 42 42 H 1.09002 * 117.49612 * 214.97820 * 24 22 20 43 43 H 1.08996 * 117.50292 * 0.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0430 1.3765 0.0000 4 6 1.6056 2.1013 1.2006 5 6 2.1493 3.5064 1.1651 6 8 2.8343 3.8681 0.2317 7 7 1.8746 4.3609 2.1704 8 6 2.4027 5.7269 2.1356 9 6 1.9541 6.4704 3.3673 10 1 1.3370 5.9751 4.1022 11 6 2.3308 7.7834 3.5553 12 7 3.0819 8.3867 2.6601 13 14 1.7741 8.7052 5.0817 14 1 0.9436 7.8092 5.9258 15 1 2.9631 9.1504 5.8522 16 1 0.9727 9.8893 4.6802 17 6 2.0718 -0.7802 1.2225 18 6 2.3810 -2.1703 0.6106 19 8 2.8795 -1.8536 -0.7079 20 6 2.0722 -0.7777 -1.2149 21 1 1.2433 -1.1770 -1.7993 22 6 2.9249 0.1468 -2.0860 23 6 2.3776 0.5215 -3.4648 24 6 3.5529 -0.4511 -3.3466 25 1 -0.3633 0.4969 0.8997 26 1 -0.3633 0.5307 -0.8800 27 1 -0.3634 -1.0274 -0.0195 28 1 1.7667 1.8653 -0.8382 29 1 0.5164 2.1342 1.2285 30 1 1.9764 1.5901 2.0889 31 1 1.3271 4.0714 2.9170 32 1 3.4920 5.6948 2.1076 33 1 2.0314 6.2375 1.2471 34 1 3.3472 9.3103 2.7925 35 1 2.9784 -0.3153 1.6100 36 1 1.3134 -0.8581 2.0015 37 1 3.1421 -2.6865 1.1957 38 1 1.4738 -2.7708 0.5440 39 1 3.4971 0.9032 -1.5488 40 1 1.4103 0.1089 -3.7515 41 1 2.5897 1.5245 -3.8349 42 1 4.5381 -0.0878 -3.6389 43 1 3.3582 -1.5030 -3.5555 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784592592.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:40 Heat of formation + Delta-G solvation = -53.517992 kcal Electronic energy + Delta-G solvation = -22630.747273 eV Core-core repulsion = 19290.759349 eV Total energy + Delta-G solvation = -3339.987924 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.50643 -38.70905 -36.63997 -35.87113 -34.14467 -32.33788 -31.28871 -29.78653 -27.82196 -27.05234 -25.29488 -23.36611 -22.39024 -22.26541 -20.89069 -19.74558 -19.33402 -17.48565 -16.51213 -16.18533 -15.82161 -15.66312 -15.19816 -15.11890 -14.91331 -14.36942 -14.03113 -14.00574 -13.71600 -13.20685 -12.85802 -12.59950 -12.28092 -12.20498 -11.96225 -11.66631 -11.59104 -11.53425 -11.43872 -11.14198 -10.97038 -10.90785 -10.88639 -10.33057 -10.27381 -10.01700 -9.78660 -9.39021 -9.05062 -8.74852 -8.38705 -7.87312 -6.17714 -4.24684 3.22344 3.29364 3.32276 3.38118 3.44679 3.71624 4.11483 4.22713 4.27553 4.44122 4.47702 4.72254 4.88359 4.94541 4.98964 5.06139 5.13617 5.18405 5.24867 5.31636 5.40409 5.45595 5.55143 5.58924 5.59189 5.62333 5.65673 5.69377 5.86707 5.90206 5.94423 6.12046 6.46709 6.75660 6.90390 7.30904 7.36788 7.44405 7.51582 7.66500 7.96319 8.62838 8.77994 9.11199 9.42213 10.92522 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028016 B = 0.003273 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.187058 B = 8553.475129 C = 9136.838396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.086 3.914 3 N -0.648 5.648 4 C 0.034 3.966 5 C 0.496 3.504 6 O -0.543 6.543 7 N -0.714 5.714 8 C 0.251 3.749 9 C -0.543 4.543 10 H 0.063 0.937 11 C 0.063 3.937 12 N -0.885 5.885 13 Si 0.903 3.097 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.282 1.282 17 C -0.147 4.147 18 C 0.048 3.952 19 O -0.365 6.365 20 C 0.123 3.877 21 H 0.066 0.934 22 C -0.152 4.152 23 C -0.179 4.179 24 C -0.171 4.171 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.355 0.645 29 H 0.056 0.944 30 H 0.096 0.904 31 H 0.389 0.611 32 H 0.027 0.973 33 H 0.026 0.974 34 H 0.265 0.735 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.057 0.943 39 H 0.137 0.863 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.842 -20.753 -5.469 22.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.006 4.006 3 N -0.282 5.282 4 C -0.098 4.098 5 C 0.280 3.720 6 O -0.421 6.421 7 N -0.364 5.364 8 C 0.130 3.870 9 C -0.581 4.581 10 H 0.081 0.919 11 C -0.140 4.140 12 N -0.522 5.522 13 Si 0.731 3.269 14 H -0.197 1.197 15 H -0.208 1.208 16 H -0.208 1.208 17 C -0.185 4.185 18 C -0.029 4.029 19 O -0.284 6.284 20 C 0.064 3.936 21 H 0.084 0.916 22 C -0.170 4.170 23 C -0.216 4.216 24 C -0.208 4.208 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.177 0.823 29 H 0.074 0.926 30 H 0.114 0.886 31 H 0.221 0.779 32 H 0.045 0.955 33 H 0.044 0.956 34 H 0.075 0.925 35 H 0.110 0.890 36 H 0.097 0.903 37 H 0.111 0.889 38 H 0.075 0.925 39 H 0.155 0.845 40 H 0.107 0.893 41 H 0.117 0.883 42 H 0.111 0.889 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.459 -20.536 -6.036 21.864 hybrid contribution -1.714 0.746 1.167 2.203 sum -6.173 -19.790 -4.869 21.295 Atomic orbital electron populations 1.22539 0.95944 1.02594 1.02743 1.22247 0.92518 0.90494 0.95374 1.60504 1.62143 1.00748 1.04782 1.21926 0.98563 0.93638 0.95683 1.20347 0.81638 0.86548 0.83431 1.90666 1.38769 1.78018 1.34686 1.46440 1.52534 1.14983 1.22402 1.19091 0.94883 0.75630 0.97422 1.21264 1.33575 0.97285 1.06005 0.91886 1.24957 0.94796 0.97346 0.96944 1.69981 1.35225 1.12507 1.34529 0.86368 0.78487 0.79689 0.82396 1.19651 1.20771 1.20809 1.23284 1.02678 0.95429 0.97063 1.23496 0.99206 0.96104 0.84112 1.88940 1.56575 1.52002 1.30868 1.22247 0.91935 0.86282 0.93087 0.91631 1.22484 1.03459 1.01999 0.89044 1.22977 0.98185 1.00725 0.99723 1.22802 0.97517 0.98547 1.01958 0.91591 0.92000 0.91865 0.82319 0.92605 0.88586 0.77850 0.95533 0.95626 0.92489 0.89016 0.90298 0.88906 0.92483 0.84510 0.89299 0.88305 0.88860 0.89101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.55 8.01 37.16 0.30 -1.25 16 2 C 0.09 0.89 0.86 -130.07 -0.11 0.78 16 3 N -0.65 -8.53 4.04 -99.67 -0.40 -8.94 16 4 C 0.03 0.46 5.55 -4.97 -0.03 0.44 16 5 C 0.50 9.64 7.87 -10.98 -0.09 9.56 16 6 O -0.54 -12.86 16.20 5.55 0.09 -12.77 16 7 N -0.71 -14.75 5.55 -61.47 -0.34 -15.09 16 8 C 0.25 6.62 5.43 -5.19 -0.03 6.59 16 9 C -0.54 -14.66 9.28 -34.44 -0.32 -14.98 16 10 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.88 -26.07 13.29 55.43 0.74 -25.33 16 13 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 14 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 C -0.15 -1.40 5.23 -24.72 -0.13 -1.53 16 18 C 0.05 0.44 7.73 38.21 0.30 0.73 16 19 O -0.37 -4.43 11.14 -35.23 -0.39 -4.82 16 20 C 0.12 1.35 3.28 -26.16 -0.09 1.27 16 21 H 0.07 0.66 7.48 -51.93 -0.39 0.28 16 22 C -0.15 -1.82 4.25 -90.62 -0.38 -2.20 16 23 C -0.18 -1.85 10.18 -26.73 -0.27 -2.13 16 24 C -0.17 -1.86 10.20 -26.73 -0.27 -2.13 16 25 H 0.07 0.56 6.58 -51.92 -0.34 0.21 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.36 4.96 7.41 -39.30 -0.29 4.67 16 29 H 0.06 0.65 6.43 -51.93 -0.33 0.32 16 30 H 0.10 1.17 6.97 -51.93 -0.36 0.81 16 31 H 0.39 6.83 8.32 -40.82 -0.34 6.49 16 32 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.09 1.02 7.72 -51.93 -0.40 0.62 16 36 H 0.08 0.61 7.86 -51.93 -0.41 0.20 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.14 1.99 6.74 -51.93 -0.35 1.64 16 40 H 0.09 0.81 8.07 -51.93 -0.42 0.39 16 41 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 347.16 15.07 5.23 5.23 Total: -1.00 -31.95 347.16 -8.30 -40.25 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -6.97 Total: 8.95 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -1.22 Total: -3.21 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: -0.01 Total: -49.36 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.30 Total: -17.59 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.95 -8.30 -40.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784592592.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.268 kcal (2) G-P(sol) polarization free energy of solvation -31.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds