Wall clock time and date at job start Tue Mar 31 2020 05:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.47145 * 2 1 4 4 C 1.52997 * 109.46974 * 239.99682 * 2 1 3 5 5 C 1.50699 * 109.46750 * 120.00128 * 2 1 3 6 6 O 1.20778 * 120.00391 * 359.97438 * 5 2 1 7 7 C 1.49092 * 119.99897 * 180.02562 * 5 2 1 8 8 O 1.21368 * 119.99752 * 8.40696 * 7 5 2 9 9 N 1.34775 * 119.99758 * 188.41050 * 7 5 2 10 10 C 1.47084 * 120.87630 * 178.86990 * 9 7 5 11 11 C 1.53234 * 108.52144 * 231.16083 * 10 9 7 12 12 N 1.46898 * 109.34056 * 306.17191 * 11 10 9 13 13 C 1.46906 * 111.00009 * 187.25039 * 12 11 10 14 14 C 1.50693 * 109.47006 * 170.00020 * 13 12 11 15 15 H 1.08001 * 120.00519 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99974 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00003 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00039 * 179.72343 * 16 14 13 19 19 H 1.48497 * 109.46786 * 180.27627 * 18 16 14 20 20 H 1.48496 * 109.47195 * 300.27743 * 18 16 14 21 21 H 1.48498 * 109.46535 * 60.28045 * 18 16 14 22 22 C 1.46905 * 111.26964 * 63.10491 * 12 11 10 23 23 C 1.47079 * 120.88510 * 358.84949 * 9 7 5 24 24 H 1.09000 * 109.46897 * 300.00141 * 1 2 3 25 25 H 1.09005 * 109.46999 * 59.99830 * 1 2 3 26 26 H 1.08994 * 109.47424 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.46982 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47062 * 300.00158 * 3 2 1 29 29 H 1.08997 * 109.47095 * 59.99667 * 3 2 1 30 30 H 1.09001 * 109.46900 * 300.00124 * 4 2 1 31 31 H 1.08997 * 109.46838 * 60.00084 * 4 2 1 32 32 H 1.08995 * 109.47103 * 180.02562 * 4 2 1 33 33 H 1.09004 * 109.62451 * 111.45344 * 10 9 7 34 34 H 1.08997 * 109.79007 * 350.97061 * 10 9 7 35 35 H 1.08999 * 109.49032 * 186.21139 * 11 10 9 36 36 H 1.09006 * 109.49033 * 66.13297 * 11 10 9 37 37 H 1.09000 * 109.46701 * 49.99832 * 13 12 11 38 38 H 1.08997 * 109.46946 * 290.00300 * 13 12 11 39 39 H 0.97006 * 119.99792 * 359.71948 * 17 16 14 40 40 H 1.09004 * 109.48656 * 56.85008 * 22 12 11 41 41 H 1.08997 * 109.49357 * 176.93473 * 22 12 11 42 42 H 1.09003 * 109.62507 * 248.54772 * 23 9 7 43 43 H 1.08996 * 109.62406 * 9.12469 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2475 -1.1691 2.0257 7 6 3.4981 -0.8462 1.4667 8 8 4.2847 -0.2570 0.7546 9 7 3.9496 -1.6232 2.4711 10 6 5.3919 -1.7906 2.7062 11 6 5.7003 -3.2891 2.7929 12 7 4.8306 -3.9071 3.8025 13 6 5.2107 -5.3062 4.0395 14 6 4.4694 -5.8315 5.2418 15 1 3.7841 -5.1903 5.7762 16 6 4.6661 -7.1306 5.6596 17 7 5.5010 -7.9113 5.0092 18 14 3.7530 -7.7793 7.1546 19 1 4.1418 -9.1917 7.3976 20 1 4.1014 -6.9586 8.3421 21 1 2.2899 -7.7034 6.9122 22 6 3.4154 -3.8034 3.4223 23 6 3.0133 -2.3260 3.3614 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8899 30 1 1.6766 -1.7490 -1.2491 31 1 1.6767 -0.2075 -2.1391 32 1 3.1300 -0.7217 -1.2490 33 1 5.6691 -1.3050 3.6419 34 1 5.9536 -1.3481 1.8836 35 1 6.7434 -3.4299 3.0760 36 1 5.5201 -3.7541 1.8236 37 1 6.2841 -5.3655 4.2199 38 1 4.9557 -5.9051 3.1652 39 1 5.9754 -7.5743 4.2330 40 1 3.2671 -4.2613 2.4443 41 1 2.8014 -4.3172 4.1620 42 1 3.0619 -1.8918 4.3601 43 1 1.9999 -2.2381 2.9698 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827483910.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:57 Heat of formation + Delta-G solvation = -52.839880 kcal Electronic energy + Delta-G solvation = -23235.461751 eV Core-core repulsion = 19895.503232 eV Total energy + Delta-G solvation = -3339.958519 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.26017 -38.99473 -37.78703 -36.18251 -34.45781 -32.58649 -30.92799 -28.44325 -27.63435 -27.56852 -26.19617 -24.70514 -23.50735 -22.35181 -21.40130 -19.82038 -18.67247 -17.19790 -16.78809 -16.65640 -15.97345 -15.65994 -14.76397 -14.68028 -14.53760 -14.35638 -14.10973 -13.73489 -13.66173 -13.49847 -12.96128 -12.76777 -12.51951 -12.43860 -12.20400 -11.91319 -11.75440 -11.64281 -11.40329 -11.35490 -11.24789 -11.05712 -10.82195 -10.73572 -10.62347 -10.36261 -10.09333 -8.97992 -8.87960 -8.55964 -8.42319 -7.45938 -6.41530 -4.11163 0.82945 2.58511 2.89379 3.42363 3.44579 3.63032 3.82197 4.24684 4.47617 4.55995 4.58065 4.71055 4.99087 5.20076 5.28318 5.30033 5.35889 5.36212 5.49161 5.51256 5.54657 5.55167 5.60675 5.66332 5.70679 5.75917 5.85947 5.89987 5.99956 6.06190 6.11552 6.28492 6.38355 6.50885 6.88949 6.95049 7.00658 7.28485 7.68080 7.85127 7.87248 8.23400 8.51275 8.81186 9.59804 10.97543 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028639 B = 0.003878 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.460450 B = 7217.968854 C = 7724.102668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.094 4.094 3 C -0.144 4.144 4 C -0.143 4.143 5 C 0.362 3.638 6 O -0.407 6.407 7 C 0.473 3.527 8 O -0.521 6.521 9 N -0.575 5.575 10 C 0.112 3.888 11 C 0.040 3.960 12 N -0.530 5.530 13 C 0.183 3.817 14 C -0.591 4.591 15 H 0.058 0.942 16 C 0.015 3.985 17 N -0.913 5.913 18 Si 1.072 2.928 19 H -0.283 1.283 20 H -0.287 1.287 21 H -0.288 1.288 22 C 0.052 3.948 23 C 0.061 3.939 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.026 0.974 37 H 0.022 0.978 38 H -0.020 1.020 39 H 0.266 0.734 40 H 0.022 0.978 41 H 0.100 0.900 42 H 0.077 0.923 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.614 16.716 -10.551 21.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.095 4.095 3 C -0.201 4.201 4 C -0.200 4.200 5 C 0.234 3.766 6 O -0.277 6.277 7 C 0.257 3.743 8 O -0.399 6.399 9 N -0.309 5.309 10 C -0.011 4.011 11 C -0.089 4.089 12 N -0.255 5.255 13 C 0.058 3.942 14 C -0.629 4.629 15 H 0.076 0.924 16 C -0.189 4.189 17 N -0.549 5.549 18 Si 0.900 3.100 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.214 1.214 22 C -0.077 4.077 23 C -0.060 4.060 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.103 0.897 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.101 0.899 36 H 0.044 0.956 37 H 0.040 0.960 38 H -0.002 1.002 39 H 0.077 0.923 40 H 0.040 0.960 41 H 0.118 0.882 42 H 0.095 0.905 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.758 15.671 -9.080 19.703 hybrid contribution 0.319 0.762 -1.603 1.804 sum -7.439 16.433 -10.683 20.965 Atomic orbital electron populations 1.21797 0.92097 1.02958 1.02539 1.20958 0.97398 0.97495 0.93668 1.21929 1.03674 0.92195 1.02313 1.21883 1.02989 0.99875 0.95266 1.25049 0.88974 0.75845 0.86773 1.90103 1.58974 1.35229 1.43374 1.20738 0.90649 0.81254 0.81611 1.90673 1.56944 1.45850 1.46420 1.48426 1.08618 1.44599 1.29226 1.21902 0.79814 0.97016 1.02319 1.22422 0.98800 0.93247 0.94470 1.62031 1.01517 1.20913 1.41030 1.19834 0.96483 0.81883 0.96029 1.21946 1.28042 0.99303 1.13614 0.92384 1.25868 0.97014 0.93544 1.02456 1.70804 1.25754 1.38695 1.19648 0.83489 0.75438 0.76171 0.74874 1.20821 1.21315 1.21419 1.22357 0.91627 0.94086 0.99607 1.23299 0.95587 0.92516 0.94580 0.91890 0.91463 0.91852 0.89725 0.91311 0.92585 0.92408 0.91054 0.90514 0.90354 0.89042 0.89919 0.95554 0.96016 1.00192 0.92341 0.96006 0.88197 0.90512 0.84731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 7.76 37.16 0.29 -0.87 16 2 C -0.09 -0.93 0.76 -155.66 -0.12 -1.05 16 3 C -0.14 -1.28 8.29 37.16 0.31 -0.97 16 4 C -0.14 -1.32 8.29 37.16 0.31 -1.01 16 5 C 0.36 4.61 5.94 -29.80 -0.18 4.43 16 6 O -0.41 -5.61 12.67 5.98 0.08 -5.53 16 7 C 0.47 6.93 7.40 -11.75 -0.09 6.84 16 8 O -0.52 -8.05 12.94 5.48 0.07 -7.98 16 9 N -0.58 -9.02 3.01 -173.12 -0.52 -9.54 16 10 C 0.11 1.72 6.59 -3.60 -0.02 1.70 16 11 C 0.04 0.72 5.62 -3.70 -0.02 0.69 16 12 N -0.53 -11.31 4.62 -235.77 -1.09 -12.40 16 13 C 0.18 4.69 4.04 -4.98 -0.02 4.67 16 14 C -0.59 -16.49 8.41 -34.44 -0.29 -16.78 16 15 H 0.06 1.61 7.13 -52.49 -0.37 1.23 16 16 C 0.01 0.43 5.46 -17.82 -0.10 0.33 16 17 N -0.91 -27.63 13.65 55.43 0.76 -26.87 16 18 Si 1.07 25.02 29.90 -169.99 -5.08 19.94 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 22 C 0.05 1.02 5.46 -3.70 -0.02 1.00 16 23 C 0.06 0.99 6.33 -3.61 -0.02 0.97 16 24 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 27 H 0.08 0.89 6.18 -51.93 -0.32 0.57 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.83 6.72 -51.93 -0.35 0.48 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.09 1.32 7.08 -51.93 -0.37 0.96 16 35 H 0.08 1.42 7.99 -51.93 -0.41 1.00 16 36 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.02 0.59 7.84 -51.93 -0.41 0.18 16 38 H -0.02 -0.53 7.99 -51.93 -0.41 -0.95 16 39 H 0.27 8.04 7.22 -40.82 -0.29 7.75 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.10 2.09 6.67 -51.93 -0.35 1.74 16 42 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 43 H 0.14 2.07 3.99 -56.28 -0.22 1.85 16 LS Contribution 336.72 15.07 5.07 5.07 Total: -1.00 -30.89 336.72 -7.64 -38.54 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -6.96 Total: -1.16 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 0.03 Total: -0.06 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: -0.85 Total: -48.82 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.15 Total: -13.51 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -5.08 Total: 19.94 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.89 -7.64 -38.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827483910.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.301 kcal (2) G-P(sol) polarization free energy of solvation -30.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds