Wall clock time and date at job start Tue Mar 31 2020 05:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.47145 * 2 1 4 4 C 1.52997 * 109.46974 * 239.99682 * 2 1 3 5 5 C 1.50699 * 109.46750 * 120.00128 * 2 1 3 6 6 O 1.20778 * 120.00391 * 359.97438 * 5 2 1 7 7 C 1.49092 * 119.99897 * 180.02562 * 5 2 1 8 8 O 1.21368 * 119.99752 * 8.40696 * 7 5 2 9 9 N 1.34775 * 119.99758 * 188.41050 * 7 5 2 10 10 C 1.47084 * 120.87630 * 178.86990 * 9 7 5 11 11 C 1.53234 * 108.52144 * 231.16083 * 10 9 7 12 12 N 1.46898 * 109.34056 * 306.17191 * 11 10 9 13 13 C 1.46906 * 111.00009 * 187.25039 * 12 11 10 14 14 C 1.50693 * 109.47006 * 170.00020 * 13 12 11 15 15 H 1.08001 * 120.00519 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99974 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00003 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00039 * 179.72343 * 16 14 13 19 19 H 1.48497 * 109.46786 * 180.27627 * 18 16 14 20 20 H 1.48496 * 109.47195 * 300.27743 * 18 16 14 21 21 H 1.48498 * 109.46535 * 60.28045 * 18 16 14 22 22 C 1.46905 * 111.26964 * 63.10491 * 12 11 10 23 23 C 1.47079 * 120.88510 * 358.84949 * 9 7 5 24 24 H 1.09000 * 109.46897 * 300.00141 * 1 2 3 25 25 H 1.09005 * 109.46999 * 59.99830 * 1 2 3 26 26 H 1.08994 * 109.47424 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.46982 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47062 * 300.00158 * 3 2 1 29 29 H 1.08997 * 109.47095 * 59.99667 * 3 2 1 30 30 H 1.09001 * 109.46900 * 300.00124 * 4 2 1 31 31 H 1.08997 * 109.46838 * 60.00084 * 4 2 1 32 32 H 1.08995 * 109.47103 * 180.02562 * 4 2 1 33 33 H 1.09004 * 109.62451 * 111.45344 * 10 9 7 34 34 H 1.08997 * 109.79007 * 350.97061 * 10 9 7 35 35 H 1.08999 * 109.49032 * 186.21139 * 11 10 9 36 36 H 1.09006 * 109.49033 * 66.13297 * 11 10 9 37 37 H 1.09000 * 109.46701 * 49.99832 * 13 12 11 38 38 H 1.08997 * 109.46946 * 290.00300 * 13 12 11 39 39 H 0.97006 * 119.99792 * 359.71948 * 17 16 14 40 40 H 1.09004 * 109.48656 * 56.85008 * 22 12 11 41 41 H 1.08997 * 109.49357 * 176.93473 * 22 12 11 42 42 H 1.09003 * 109.62507 * 248.54772 * 23 9 7 43 43 H 1.08996 * 109.62406 * 9.12469 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2475 -1.1691 2.0257 7 6 3.4981 -0.8462 1.4667 8 8 4.2847 -0.2570 0.7546 9 7 3.9496 -1.6232 2.4711 10 6 5.3919 -1.7906 2.7062 11 6 5.7003 -3.2891 2.7929 12 7 4.8306 -3.9071 3.8025 13 6 5.2107 -5.3062 4.0395 14 6 4.4694 -5.8315 5.2418 15 1 3.7841 -5.1903 5.7762 16 6 4.6661 -7.1306 5.6596 17 7 5.5010 -7.9113 5.0092 18 14 3.7530 -7.7793 7.1546 19 1 4.1418 -9.1917 7.3976 20 1 4.1014 -6.9586 8.3421 21 1 2.2899 -7.7034 6.9122 22 6 3.4154 -3.8034 3.4223 23 6 3.0133 -2.3260 3.3614 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8899 30 1 1.6766 -1.7490 -1.2491 31 1 1.6767 -0.2075 -2.1391 32 1 3.1300 -0.7217 -1.2490 33 1 5.6691 -1.3050 3.6419 34 1 5.9536 -1.3481 1.8836 35 1 6.7434 -3.4299 3.0760 36 1 5.5201 -3.7541 1.8236 37 1 6.2841 -5.3655 4.2199 38 1 4.9557 -5.9051 3.1652 39 1 5.9754 -7.5743 4.2330 40 1 3.2671 -4.2613 2.4443 41 1 2.8014 -4.3172 4.1620 42 1 3.0619 -1.8918 4.3601 43 1 1.9999 -2.2381 2.9698 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827483910.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:56 Heat of formation + Delta-G solvation = -73.117229 kcal Electronic energy + Delta-G solvation = -23236.341043 eV Core-core repulsion = 19895.503232 eV Total energy + Delta-G solvation = -3340.837811 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.36529 -40.23572 -39.16528 -37.18029 -36.01228 -34.52960 -32.36042 -30.05720 -28.45833 -28.26863 -27.61496 -26.22732 -24.96729 -24.10204 -22.78750 -21.11693 -19.75379 -18.95742 -18.37553 -17.77099 -17.08428 -16.77936 -16.29945 -16.05324 -15.90777 -15.68566 -15.59907 -15.35031 -14.80562 -14.60833 -14.29876 -14.00321 -13.70503 -13.48899 -13.20031 -13.14034 -13.06798 -12.97486 -12.68486 -12.59195 -12.48493 -12.38408 -12.24716 -12.17085 -11.96255 -11.91981 -11.60569 -10.86560 -10.59917 -10.12098 -9.98777 -9.24898 -8.70503 -6.41677 -0.23798 1.44320 1.54057 1.62234 1.76486 1.81595 2.54683 2.68464 3.02550 3.14188 3.36305 3.78804 3.81029 3.85054 3.87392 4.04680 4.16042 4.21233 4.24888 4.44879 4.57593 4.63539 4.70077 4.71128 4.72475 4.78881 4.82233 4.89314 4.91440 4.91605 4.96650 4.99818 5.10620 5.21181 5.29338 5.38095 5.69019 5.80210 5.91546 6.09887 6.25053 6.35392 6.56096 6.67535 7.38996 8.68557 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028639 B = 0.003878 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.460450 B = 7217.968854 C = 7724.102668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.091 4.091 3 C -0.141 4.141 4 C -0.141 4.141 5 C 0.365 3.635 6 O -0.418 6.418 7 C 0.471 3.529 8 O -0.526 6.526 9 N -0.586 5.586 10 C 0.120 3.880 11 C 0.041 3.959 12 N -0.535 5.535 13 C 0.194 3.806 14 C -0.600 4.600 15 H 0.059 0.941 16 C -0.036 4.036 17 N -0.938 5.938 18 Si 1.121 2.879 19 H -0.285 1.285 20 H -0.269 1.269 21 H -0.268 1.268 22 C 0.054 3.946 23 C 0.077 3.923 24 H 0.060 0.940 25 H 0.092 0.908 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.093 0.907 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.097 0.903 32 H 0.058 0.942 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.018 0.982 37 H 0.004 0.996 38 H -0.046 1.046 39 H 0.253 0.747 40 H 0.012 0.988 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.176 18.567 -10.822 23.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.092 4.092 3 C -0.198 4.198 4 C -0.198 4.198 5 C 0.237 3.763 6 O -0.289 6.289 7 C 0.256 3.744 8 O -0.404 6.404 9 N -0.319 5.319 10 C -0.002 4.002 11 C -0.088 4.088 12 N -0.260 5.260 13 C 0.068 3.932 14 C -0.638 4.638 15 H 0.077 0.923 16 C -0.233 4.233 17 N -0.575 5.575 18 Si 0.942 3.058 19 H -0.210 1.210 20 H -0.194 1.194 21 H -0.193 1.193 22 C -0.074 4.074 23 C -0.044 4.044 24 H 0.079 0.921 25 H 0.110 0.890 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.112 0.888 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.115 0.885 32 H 0.077 0.923 33 H 0.105 0.895 34 H 0.123 0.877 35 H 0.106 0.894 36 H 0.037 0.963 37 H 0.022 0.978 38 H -0.028 1.028 39 H 0.062 0.938 40 H 0.030 0.970 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -9.319 17.569 -9.382 21.990 hybrid contribution 0.843 0.246 -1.611 1.834 sum -8.477 17.816 -10.993 22.585 Atomic orbital electron populations 1.21805 0.90651 1.02903 1.03704 1.21062 0.98418 0.97670 0.92082 1.21921 1.02489 0.91608 1.03750 1.21893 1.01847 1.00091 0.96004 1.25345 0.87640 0.75679 0.87660 1.90074 1.58705 1.36038 1.44115 1.21215 0.91773 0.80586 0.80810 1.90672 1.57527 1.45895 1.46314 1.48504 1.08484 1.45183 1.29749 1.21819 0.80250 0.94790 1.03353 1.22496 0.98504 0.94798 0.93036 1.61972 1.03037 1.18070 1.42898 1.19548 0.95106 0.84167 0.94428 1.22263 1.27887 0.99574 1.14034 0.92306 1.27427 0.96979 0.94203 1.04724 1.70935 1.27259 1.39265 1.20064 0.82882 0.75323 0.75604 0.72015 1.21046 1.19416 1.19280 1.22342 0.90249 0.96520 0.98324 1.23166 0.96179 0.89932 0.95166 0.92083 0.88969 0.92540 0.91501 0.88818 0.92274 0.92716 0.88463 0.92253 0.89479 0.87711 0.89398 0.96327 0.97793 1.02797 0.93801 0.96998 0.89924 0.90133 0.83522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 7.76 71.98 0.56 -1.34 16 2 C -0.09 -1.59 0.76 -52.93 -0.04 -1.63 16 3 C -0.14 -2.13 8.29 71.98 0.60 -1.54 16 4 C -0.14 -2.31 8.29 71.98 0.60 -1.71 16 5 C 0.36 8.70 5.94 28.60 0.17 8.87 16 6 O -0.42 -10.92 12.67 -1.50 -0.02 -10.94 16 7 C 0.47 13.20 7.40 87.16 0.64 13.84 16 8 O -0.53 -15.56 12.94 -3.30 -0.04 -15.61 16 9 N -0.59 -17.77 3.01 -819.97 -2.47 -20.24 16 10 C 0.12 3.59 6.59 86.35 0.57 4.15 16 11 C 0.04 1.46 5.62 86.38 0.49 1.95 16 12 N -0.54 -23.22 4.62 -899.83 -4.16 -27.37 16 13 C 0.19 10.30 4.04 85.55 0.35 10.64 16 14 C -0.60 -34.01 8.41 25.60 0.22 -33.80 16 15 H 0.06 3.27 7.13 -2.91 -0.02 3.25 16 16 C -0.04 -2.07 5.46 84.66 0.46 -1.60 16 17 N -0.94 -58.02 13.65 21.45 0.29 -57.73 16 18 Si 1.12 49.95 29.90 68.60 2.05 52.00 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 21 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 22 C 0.05 2.15 5.46 86.38 0.47 2.62 16 23 C 0.08 2.43 6.33 86.35 0.55 2.97 16 24 H 0.06 0.90 8.10 -2.39 -0.02 0.88 16 25 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 26 H 0.06 0.89 8.10 -2.39 -0.02 0.87 16 27 H 0.07 1.28 6.18 -2.39 -0.01 1.27 16 28 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.06 1.19 6.72 -2.39 -0.02 1.17 16 33 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.10 2.89 7.08 -2.39 -0.02 2.87 16 35 H 0.09 3.04 7.99 -2.39 -0.02 3.02 16 36 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 37 H 0.00 0.23 7.84 -2.39 -0.02 0.21 16 38 H -0.05 -2.61 7.99 -2.39 -0.02 -2.63 16 39 H 0.25 15.88 7.22 -92.70 -0.67 15.21 16 40 H 0.01 0.48 8.14 -2.39 -0.02 0.47 16 41 H 0.08 3.52 6.67 -2.39 -0.02 3.50 16 42 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 43 H 0.15 4.37 3.99 -71.29 -0.28 4.08 16 Total: -1.00 -66.93 336.72 2.09 -64.84 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.81 Total: 11.60 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: 5.62 Total: 3.44 kcal Atomic # 7 Polarization: -99.01 SS G_CDS: -6.33 Total: -105.34 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -0.06 Total: -26.54 kcal Atomic # 14 Polarization: 49.95 SS G_CDS: 2.05 Total: 52.00 kcal Total: -66.93 2.09 -64.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827483910.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.275 kcal (2) G-P(sol) polarization free energy of solvation -66.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds