Wall clock time and date at job start Tue Mar 31 2020 05:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47227 * 2 1 4 4 C 1.53007 * 109.47034 * 239.99810 * 2 1 3 5 5 C 1.50698 * 109.46915 * 60.00220 * 4 2 1 6 6 H 1.08000 * 120.00114 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00026 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00597 * 179.97438 * 7 5 4 9 9 Si 1.86807 * 119.99779 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47125 * 89.99839 * 9 7 5 11 11 H 1.48502 * 109.47016 * 209.99757 * 9 7 5 12 12 H 1.48492 * 109.47208 * 329.99923 * 9 7 5 13 13 C 1.53002 * 109.47090 * 120.00311 * 2 1 3 14 14 N 1.46501 * 109.46840 * 299.99842 * 13 2 1 15 15 C 1.34781 * 120.00069 * 180.02562 * 14 13 2 16 16 O 1.21584 * 119.99609 * 359.97438 * 15 14 13 17 17 N 1.34779 * 119.99794 * 180.02562 * 15 14 13 18 18 C 1.46978 * 127.25508 * 0.03887 * 17 15 14 19 19 C 1.50587 * 107.13581 * 179.97438 * 18 17 15 20 20 C 1.30397 * 110.11812 * 0.02562 * 19 18 17 21 21 C 1.46982 * 127.24871 * 179.97438 * 17 15 14 22 22 H 1.08995 * 109.90748 * 299.59164 * 21 17 15 23 23 C 1.52999 * 109.90461 * 60.65890 * 21 17 15 24 24 O 1.42903 * 109.47256 * 65.00143 * 23 21 17 25 25 H 1.08991 * 109.47341 * 299.99806 * 1 2 3 26 26 H 1.08999 * 109.46982 * 60.00055 * 1 2 3 27 27 H 1.09003 * 109.47226 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47214 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47094 * 299.99876 * 3 2 1 30 30 H 1.08993 * 109.47505 * 60.00089 * 3 2 1 31 31 H 1.09004 * 109.47029 * 180.02562 * 4 2 1 32 32 H 1.08998 * 109.47490 * 299.99731 * 4 2 1 33 33 H 0.97000 * 120.00765 * 180.02562 * 8 7 5 34 34 H 1.09004 * 109.47108 * 179.97438 * 13 2 1 35 35 H 1.08990 * 109.47396 * 60.00026 * 13 2 1 36 36 H 0.96999 * 120.00061 * 359.97438 * 14 13 2 37 37 H 1.08995 * 109.90886 * 299.34554 * 18 17 15 38 38 H 1.09003 * 109.90357 * 60.59536 * 18 17 15 39 39 H 1.07995 * 124.94352 * 180.02562 * 19 18 17 40 40 H 1.07993 * 124.94297 * 179.97438 * 20 19 18 41 41 H 1.08997 * 109.47286 * 304.99703 * 23 21 17 42 42 H 1.09008 * 109.47201 * 184.99484 * 23 21 17 43 43 H 0.96700 * 114.00311 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5377 -0.0109 -2.4797 6 1 0.9164 0.8670 -2.3806 7 6 1.8711 -0.4816 -3.7320 8 7 1.4324 0.1380 -4.8058 9 14 2.9450 -2.0005 -3.9033 10 1 2.0864 -3.2112 -3.9493 11 1 3.7374 -1.9077 -5.1559 12 1 3.8650 -2.0900 -2.7411 13 6 2.0400 -0.7213 1.2492 14 7 1.5516 -0.0307 2.4454 15 6 1.8776 -0.4909 3.6695 16 8 2.5766 -1.4794 3.7810 17 7 1.4279 0.1442 4.7700 18 6 0.5783 1.3425 4.8209 19 6 0.3507 1.6635 6.2745 20 6 0.9669 0.7953 7.0274 21 6 1.6827 -0.2164 6.1719 22 1 1.2985 -1.2162 6.3736 23 6 3.1851 -0.1686 6.4572 24 8 3.6522 1.1756 6.3268 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 3.1300 -0.7217 -1.2490 32 1 1.6767 -1.7490 -1.2493 33 1 1.6667 -0.1934 -5.6869 34 1 3.1300 -0.7217 1.2490 35 1 1.6767 -1.7489 1.2492 36 1 0.9943 0.7582 2.3564 37 1 1.0822 2.1758 4.3315 38 1 -0.3749 1.1427 4.3313 39 1 -0.2374 2.4922 6.6402 40 1 0.9638 0.8006 8.1073 41 1 3.7104 -0.8064 5.7463 42 1 3.3739 -0.5220 7.4709 43 1 4.5989 1.2811 6.4938 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883697944.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:23 Heat of formation + Delta-G solvation = -54.116176 kcal Electronic energy + Delta-G solvation = -22903.941749 eV Core-core repulsion = 19563.927886 eV Total energy + Delta-G solvation = -3340.013863 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.65431 -38.58634 -37.00500 -36.35394 -33.65523 -32.29995 -31.61445 -30.23754 -27.78485 -26.53243 -26.25568 -25.43969 -23.25023 -22.06765 -19.94511 -19.72549 -18.69495 -17.76754 -17.32648 -16.79305 -15.98930 -15.73328 -15.06439 -14.75467 -14.49329 -14.17271 -13.74156 -13.67901 -13.51750 -13.36827 -12.91518 -12.70320 -12.61816 -12.28928 -12.23506 -12.18504 -11.22866 -11.16730 -11.10122 -10.99271 -10.59707 -10.46054 -10.36573 -9.95246 -9.93829 -9.80992 -9.72916 -9.49615 -8.97675 -8.84423 -8.52013 -8.37338 -6.02780 -3.99965 1.88031 2.56416 3.31890 3.33084 3.40962 3.45499 3.95981 4.13605 4.36354 4.47261 4.53632 5.00732 5.05903 5.21876 5.30019 5.34568 5.36583 5.40366 5.48279 5.51579 5.57245 5.66812 5.95796 6.07275 6.14814 6.16070 6.22850 6.35745 6.49445 6.53490 6.62050 6.76081 6.94046 7.03614 7.06853 7.12625 7.22618 7.39027 7.45190 7.79577 8.08500 8.54309 8.71599 9.01294 9.60004 11.09949 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.032467 B = 0.003603 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.197402 B = 7768.578695 C = 8148.777953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.063 4.063 3 C -0.127 4.127 4 C -0.001 4.001 5 C -0.510 4.510 6 H 0.078 0.922 7 C 0.067 3.933 8 N -0.904 5.904 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.145 3.855 14 N -0.732 5.732 15 C 0.730 3.270 16 O -0.592 6.592 17 N -0.631 5.631 18 C 0.125 3.875 19 C -0.159 4.159 20 C -0.153 4.153 21 C 0.181 3.819 22 H 0.093 0.907 23 C 0.065 3.935 24 O -0.565 6.565 25 H 0.030 0.970 26 H 0.072 0.928 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.072 0.928 30 H 0.030 0.970 31 H 0.018 0.982 32 H 0.014 0.986 33 H 0.262 0.738 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.396 0.604 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.066 0.934 42 H 0.051 0.949 43 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.885 3.053 24.243 24.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.063 4.063 3 C -0.185 4.185 4 C -0.039 4.039 5 C -0.548 4.548 6 H 0.096 0.904 7 C -0.134 4.134 8 N -0.544 5.544 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.021 3.979 14 N -0.387 5.387 15 C 0.433 3.567 16 O -0.471 6.471 17 N -0.371 5.371 18 C 0.002 3.998 19 C -0.177 4.177 20 C -0.171 4.171 21 C 0.077 3.923 22 H 0.111 0.889 23 C -0.014 4.014 24 O -0.369 6.369 25 H 0.049 0.951 26 H 0.091 0.909 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.049 0.951 31 H 0.037 0.963 32 H 0.032 0.968 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.231 0.769 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.162 0.838 40 H 0.161 0.839 41 H 0.084 0.916 42 H 0.069 0.931 43 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -0.948 2.342 23.832 23.966 hybrid contribution 0.870 -0.501 -0.090 1.008 sum -0.078 1.841 23.742 23.814 Atomic orbital electron populations 1.21764 0.94820 1.01246 1.00669 1.20703 0.95830 0.95952 0.93864 1.21759 1.00462 0.95585 1.00666 1.19588 0.96309 0.95497 0.92538 1.21080 1.31764 1.13353 0.88615 0.90393 1.24995 0.95708 0.96750 0.95974 1.69900 1.45977 1.40611 0.97872 0.86859 0.81349 0.83928 0.77645 1.20374 1.21525 1.18965 1.21516 0.98653 0.95643 0.82045 1.45301 1.56107 1.33173 1.04136 1.15232 0.79979 0.82154 0.79370 1.90890 1.43122 1.27645 1.85448 1.47154 1.54732 1.30589 1.04588 1.20739 0.94572 0.88281 0.96204 1.23131 1.00697 0.99763 0.94146 1.23043 0.97994 0.96663 0.99424 1.20250 0.93621 0.98458 0.79998 0.88940 1.22517 0.94684 0.84285 0.99865 1.86500 1.28764 1.27451 1.94211 0.95134 0.90890 0.93390 0.93397 0.90893 0.95120 0.96330 0.96776 0.92811 0.92015 0.91983 0.76921 0.90636 0.90792 0.83843 0.83923 0.91625 0.93124 0.77830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 2 C -0.06 -1.18 0.54 -154.51 -0.08 -1.26 16 3 C -0.13 -2.26 8.05 37.16 0.30 -1.96 16 4 C 0.00 -0.03 3.11 -27.88 -0.09 -0.12 16 5 C -0.51 -13.72 8.20 -34.44 -0.28 -14.00 16 6 H 0.08 2.21 5.92 -52.49 -0.31 1.90 16 7 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16 8 N -0.90 -27.33 13.96 55.43 0.77 -26.55 16 9 Si 0.87 21.63 27.47 -169.99 -4.67 16.96 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 13 C 0.14 2.54 4.56 -4.04 -0.02 2.52 16 14 N -0.73 -11.22 4.93 -65.23 -0.32 -11.54 16 15 C 0.73 11.88 8.34 -86.91 -0.72 11.15 16 16 O -0.59 -11.58 15.45 5.29 0.08 -11.49 16 17 N -0.63 -8.20 3.06 -173.87 -0.53 -8.73 16 18 C 0.13 1.26 6.33 -4.99 -0.03 1.23 16 19 C -0.16 -1.30 10.87 -35.91 -0.39 -1.69 16 20 C -0.15 -1.28 9.61 -35.91 -0.35 -1.63 16 21 C 0.18 1.99 3.41 -68.87 -0.23 1.75 16 22 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 23 C 0.07 0.69 6.72 37.16 0.25 0.94 16 24 O -0.56 -6.05 13.05 -35.23 -0.46 -6.51 16 25 H 0.03 0.44 6.86 -51.93 -0.36 0.09 16 26 H 0.07 1.43 6.62 -51.93 -0.34 1.09 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.07 1.44 6.62 -51.93 -0.34 1.09 16 30 H 0.03 0.45 6.86 -51.93 -0.36 0.10 16 31 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 32 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 33 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.40 5.31 5.26 -40.82 -0.21 5.10 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.07 0.87 6.79 -51.93 -0.35 0.51 16 42 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 43 H 0.38 2.53 9.12 45.56 0.42 2.95 16 LS Contribution 340.31 15.07 5.13 5.13 Total: -1.00 -33.42 340.31 -7.47 -40.89 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -6.02 Total: 5.08 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -1.45 Total: -3.22 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: -0.08 Total: -46.83 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.38 Total: -18.01 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.42 -7.47 -40.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883697944.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.229 kcal (2) G-P(sol) polarization free energy of solvation -33.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds