Wall clock time and date at job start Tue Mar 31 2020 05:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 120.00014 * 2 1 4 4 C 1.52998 * 109.46870 * 125.00455 * 3 2 1 5 5 O 1.42905 * 109.45903 * 65.02814 * 4 3 2 6 6 C 1.53038 * 109.46351 * 305.07064 * 4 3 2 7 7 C 1.53192 * 109.31617 * 178.61293 * 6 4 3 8 8 N 1.46931 * 108.77361 * 54.63462 * 7 6 4 9 9 C 1.34772 * 120.62931 * 126.41101 * 8 7 6 10 10 O 1.21590 * 119.99868 * 174.94176 * 9 8 7 11 11 N 1.34777 * 120.00206 * 354.94774 * 9 8 7 12 12 C 1.46502 * 120.00108 * 185.07610 * 11 9 8 13 13 C 1.53000 * 109.47092 * 180.02562 * 12 11 9 14 14 C 1.50698 * 109.46796 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00731 * 359.97438 * 14 13 12 16 16 C 1.37883 * 119.99642 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00189 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99730 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47456 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47045 * 120.00075 * 18 16 14 21 21 H 1.48498 * 109.47336 * 239.99575 * 18 16 14 22 22 C 1.46923 * 118.73554 * 306.39241 * 8 7 6 23 23 C 1.53039 * 109.46242 * 185.00240 * 4 3 2 24 24 H 1.07997 * 120.00066 * 359.97438 * 1 2 3 25 25 H 1.08002 * 119.99917 * 180.02562 * 1 2 3 26 26 H 1.07997 * 120.00066 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47095 * 5.00710 * 3 2 1 28 28 H 1.08995 * 109.47049 * 245.00755 * 3 2 1 29 29 H 0.96699 * 113.99924 * 299.99567 * 5 4 3 30 30 H 1.09007 * 109.49871 * 298.56630 * 6 4 3 31 31 H 1.09001 * 109.49771 * 58.65843 * 6 4 3 32 32 H 1.09000 * 109.58764 * 294.84971 * 7 6 4 33 33 H 1.09000 * 109.58322 * 174.41738 * 7 6 4 34 34 H 0.97002 * 120.00131 * 5.06211 * 11 9 8 35 35 H 1.09009 * 109.46438 * 299.99107 * 12 11 9 36 36 H 1.09000 * 109.47595 * 59.99267 * 12 11 9 37 37 H 1.09001 * 109.46970 * 299.98828 * 13 12 11 38 38 H 1.09000 * 109.47533 * 59.99187 * 13 12 11 39 39 H 0.96997 * 120.00016 * 180.02562 * 17 16 14 40 40 H 1.08993 * 109.58662 * 293.81817 * 22 8 7 41 41 H 1.09007 * 109.69603 * 173.46528 * 22 8 7 42 42 H 1.09009 * 109.49673 * 301.33747 * 23 4 3 43 43 H 1.08996 * 109.49634 * 61.42793 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 8 4.0299 0.3226 1.0038 6 6 2.2676 1.0697 2.4792 7 6 3.2486 1.0640 3.6558 8 7 4.0049 2.3236 3.6470 9 6 4.0544 3.1025 4.7458 10 8 4.7572 4.0946 4.7565 11 7 3.3250 2.7816 5.8327 12 6 3.2915 3.6853 6.9853 13 6 2.3979 3.0892 8.0749 14 6 2.3640 4.0186 9.2607 15 1 2.9240 4.9417 9.2397 16 6 1.6178 3.6902 10.3728 17 7 0.9354 2.5663 10.3983 18 14 1.5763 4.8418 11.8430 19 1 2.4217 6.0306 11.5647 20 1 0.1783 5.2765 12.0919 21 1 2.0953 4.1342 13.0409 22 6 4.7066 2.7177 2.4178 23 6 3.7093 2.7049 1.2551 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0897 28 1 2.6212 1.4027 -0.9314 29 1 3.6736 -0.5747 0.9484 30 1 1.5252 1.8538 2.6282 31 1 1.7685 0.1027 2.4168 32 1 3.9361 0.2243 3.5543 33 1 2.6963 0.9759 4.5914 34 1 2.8220 1.9524 5.8518 35 1 4.3013 3.8149 7.3748 36 1 2.8939 4.6524 6.6775 37 1 1.3881 2.9593 7.6858 38 1 2.7959 2.1223 8.3827 39 1 0.4102 2.3355 11.1805 40 1 5.5129 2.0129 2.2154 41 1 5.1183 3.7202 2.5351 42 1 4.2364 2.9017 0.3215 43 1 2.9534 3.4736 1.4156 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884262998.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:11 Heat of formation + Delta-G solvation = -68.944695 kcal Electronic energy + Delta-G solvation = -22548.444352 eV Core-core repulsion = 19207.787476 eV Total energy + Delta-G solvation = -3340.656876 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.48125 -38.88937 -35.70747 -34.82005 -34.54090 -32.92676 -31.82486 -31.06097 -29.44966 -27.70202 -24.85136 -23.63211 -23.35621 -21.21451 -20.65783 -20.01711 -19.36238 -17.97260 -16.81808 -16.43648 -15.77423 -15.74147 -15.37684 -15.00286 -14.52085 -14.29883 -14.10321 -14.02511 -13.64061 -13.30316 -13.16912 -12.92589 -12.42620 -12.27610 -12.10548 -12.00358 -11.58288 -11.43801 -11.31892 -11.12209 -11.02952 -10.59905 -10.51125 -10.35294 -10.30113 -9.81779 -9.56759 -9.50363 -9.22261 -8.66185 -8.43725 -8.11950 -6.07918 -4.10175 1.89201 2.98037 3.29583 3.37173 3.42866 3.59812 3.92945 4.25580 4.30280 4.44085 4.51431 4.55806 4.75763 4.83609 4.96812 5.15589 5.25008 5.29344 5.35123 5.43215 5.46642 5.52645 5.58665 5.68047 5.75953 5.86349 5.87317 6.14683 6.23574 6.32064 6.36774 6.43525 6.68679 6.80652 7.05275 7.25880 7.38347 7.58490 7.65371 7.91670 8.27753 8.42767 8.95052 9.04086 9.54512 11.03858 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024917 B = 0.003237 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.447643 B = 8648.571364 C = 9399.882506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.159 4.159 3 C -0.120 4.120 4 C 0.142 3.858 5 O -0.553 6.553 6 C -0.159 4.159 7 C 0.117 3.883 8 N -0.633 5.633 9 C 0.702 3.298 10 O -0.597 6.597 11 N -0.740 5.740 12 C 0.139 3.861 13 C 0.013 3.987 14 C -0.519 4.519 15 H 0.060 0.940 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.896 3.104 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.283 1.283 22 C 0.136 3.864 23 C -0.121 4.121 24 H 0.097 0.903 25 H 0.098 0.902 26 H 0.108 0.892 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.372 0.628 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.391 0.609 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.021 0.979 38 H 0.022 0.978 39 H 0.261 0.739 40 H 0.069 0.931 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.609 -7.752 -22.462 23.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.177 4.177 3 C -0.158 4.158 4 C 0.101 3.899 5 O -0.359 6.359 6 C -0.198 4.198 7 C -0.006 4.006 8 N -0.372 5.372 9 C 0.403 3.597 10 O -0.476 6.476 11 N -0.396 5.396 12 C 0.016 3.984 13 C -0.025 4.025 14 C -0.558 4.558 15 H 0.078 0.922 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.724 3.276 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.210 1.210 22 C 0.013 3.987 23 C -0.159 4.159 24 H 0.115 0.885 25 H 0.116 0.884 26 H 0.126 0.874 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.220 0.780 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.227 0.773 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.039 0.961 38 H 0.040 0.960 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.109 0.891 42 H 0.098 0.902 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.396 -6.557 -22.277 23.264 hybrid contribution -0.964 -0.515 0.809 1.360 sum 0.432 -7.072 -21.468 22.607 Atomic orbital electron populations 1.23896 0.95922 1.02055 1.00547 1.22832 0.96126 0.98225 1.00506 1.21481 0.98720 0.96171 0.99417 1.21092 0.87362 0.89090 0.92372 1.86566 1.35465 1.18097 1.95784 1.22617 0.98600 1.03289 0.95260 1.21491 0.93989 0.86824 0.98343 1.47244 1.55014 1.22874 1.12059 1.15981 0.80732 0.82695 0.80252 1.90868 1.44858 1.29019 1.82893 1.45710 1.51361 1.25906 1.16578 1.21587 1.00831 0.91887 0.84054 1.19324 0.94300 0.96868 0.91966 1.21098 1.29113 1.05897 0.99651 0.92155 1.24999 0.95270 0.95363 0.98710 1.69965 1.30657 1.22974 1.29797 0.86458 0.77813 0.80955 0.82353 1.19558 1.20969 1.20952 1.21260 0.93692 1.02076 0.81676 1.21955 0.99834 0.94473 0.99625 0.88495 0.88412 0.87396 0.90506 0.90090 0.78038 0.90438 0.90285 0.91081 0.90229 0.77280 0.92736 0.92914 0.96059 0.96008 0.92948 0.91304 0.89062 0.90163 0.90256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.19 14.32 29.01 0.42 -0.77 16 2 C -0.16 -0.98 7.57 -36.03 -0.27 -1.26 16 3 C -0.12 -0.83 4.96 -27.88 -0.14 -0.97 16 4 C 0.14 1.17 0.73 -90.58 -0.07 1.11 16 5 O -0.55 -4.63 11.69 -35.23 -0.41 -5.04 16 6 C -0.16 -1.41 4.79 -26.61 -0.13 -1.54 16 7 C 0.12 1.30 6.19 -3.71 -0.02 1.28 16 8 N -0.63 -9.06 2.97 -178.50 -0.53 -9.59 16 9 C 0.70 13.16 8.30 -86.92 -0.72 12.44 16 10 O -0.60 -13.43 15.79 5.29 0.08 -13.34 16 11 N -0.74 -13.85 5.47 -65.22 -0.36 -14.21 16 12 C 0.14 3.09 5.62 -4.04 -0.02 3.07 16 13 C 0.01 0.33 5.09 -27.88 -0.14 0.18 16 14 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 15 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -26.24 13.29 55.43 0.74 -25.51 16 18 Si 0.90 21.53 29.54 -169.99 -5.02 16.50 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 C 0.14 1.72 6.17 -3.71 -0.02 1.70 16 23 C -0.12 -1.17 5.11 -26.61 -0.14 -1.31 16 24 H 0.10 0.62 7.84 -52.49 -0.41 0.21 16 25 H 0.10 0.54 8.06 -52.49 -0.42 0.12 16 26 H 0.11 0.53 7.22 -52.49 -0.38 0.15 16 27 H 0.08 0.54 7.79 -51.93 -0.40 0.14 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.37 1.96 7.75 45.56 0.35 2.31 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.58 7.02 -51.93 -0.36 0.22 16 32 H 0.07 0.74 7.81 -51.93 -0.41 0.33 16 33 H 0.08 0.89 5.57 -51.93 -0.29 0.60 16 34 H 0.39 6.43 5.93 -40.82 -0.24 6.18 16 35 H 0.05 1.27 8.14 -51.92 -0.42 0.84 16 36 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 40 H 0.07 0.85 7.81 -51.93 -0.41 0.45 16 41 H 0.09 1.30 7.04 -51.92 -0.37 0.94 16 42 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 43 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 344.52 15.07 5.19 5.19 Total: -1.00 -33.05 344.52 -8.24 -41.29 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -6.26 Total: 4.12 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -1.67 Total: 0.59 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: -0.15 Total: -49.31 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.33 Total: -18.38 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.05 -8.24 -41.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884262998.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.658 kcal (2) G-P(sol) polarization free energy of solvation -33.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds