Wall clock time and date at job start Tue Mar 31 2020 05:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47237 * 2 1 4 4 C 1.53004 * 110.88686 * 59.02166 * 3 2 1 5 5 C 1.53001 * 109.46550 * 60.10131 * 4 3 2 6 6 C 1.54481 * 110.97094 * 182.83975 * 3 2 1 7 7 N 1.46764 * 105.47285 * 143.53230 * 6 3 2 8 8 C 1.34426 * 111.30129 * 342.98072 * 7 6 3 9 9 O 1.21283 * 124.94072 * 180.37073 * 8 7 6 10 10 C 1.51279 * 110.11535 * 0.41010 * 8 7 6 11 11 H 1.08996 * 110.48581 * 257.57466 * 10 8 7 12 12 N 1.46498 * 110.49015 * 134.93036 * 10 8 7 13 13 C 1.34780 * 119.99987 * 90.21808 * 12 10 8 14 14 O 1.21279 * 119.99906 * 0.02562 * 13 12 10 15 15 C 1.50702 * 119.99721 * 180.02562 * 13 12 10 16 16 C 1.53001 * 109.46544 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.46789 * 180.02562 * 16 15 13 18 18 H 1.08002 * 119.99832 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00031 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99978 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00181 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47086 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47043 * 119.99995 * 21 19 17 24 24 H 1.48503 * 109.47294 * 240.00428 * 21 19 17 25 25 H 1.09004 * 109.46907 * 174.61667 * 1 2 3 26 26 H 1.09000 * 109.47529 * 294.61731 * 1 2 3 27 27 H 1.08991 * 109.46879 * 54.62323 * 1 2 3 28 28 H 1.08996 * 109.47918 * 239.99555 * 2 1 3 29 29 H 1.09000 * 109.47364 * 119.99593 * 2 1 3 30 30 H 1.08998 * 109.46792 * 180.09856 * 4 3 2 31 31 H 1.08991 * 109.47183 * 300.10219 * 4 3 2 32 32 H 1.08991 * 109.47365 * 295.88151 * 5 4 3 33 33 H 1.08997 * 109.47360 * 55.88323 * 5 4 3 34 34 H 1.08999 * 109.46954 * 175.87893 * 5 4 3 35 35 H 1.09002 * 110.24449 * 262.52601 * 6 3 2 36 36 H 1.08990 * 110.24630 * 24.44292 * 6 3 2 37 37 H 0.96997 * 124.35485 * 163.00528 * 7 6 3 38 38 H 0.96999 * 119.99986 * 270.23221 * 12 10 8 39 39 H 1.08997 * 109.47519 * 300.00264 * 15 13 12 40 40 H 1.09001 * 109.46987 * 60.00786 * 15 13 12 41 41 H 1.08992 * 109.47576 * 299.99948 * 16 15 13 42 42 H 1.09001 * 109.47114 * 60.00524 * 16 15 13 43 43 H 0.97006 * 119.99907 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5282 2.2021 1.2256 5 6 2.0201 1.5083 2.4975 6 6 3.5826 1.4835 -0.0715 7 7 3.9051 2.6447 -0.9091 8 6 2.8362 3.0475 -1.6178 9 8 2.8282 3.9798 -2.3935 10 6 1.6444 2.1692 -1.3064 11 1 1.4808 1.4497 -2.1086 12 7 0.4465 2.9859 -1.0962 13 6 -0.3537 3.2890 -2.1375 14 8 -0.0823 2.8852 -3.2484 15 6 -1.5856 4.1296 -1.9214 16 6 -2.3109 4.3235 -3.2545 17 6 -3.5426 5.1647 -3.0385 18 1 -3.7840 5.5246 -2.0492 19 6 -4.3611 5.4748 -4.1037 20 7 -4.0673 5.0362 -5.3083 21 14 -5.8882 6.5169 -3.8359 22 1 -5.9935 6.8808 -2.4000 23 1 -5.7937 7.7528 -4.6537 24 1 -7.0910 5.7459 -4.2411 25 1 -0.3633 -1.0232 -0.0964 26 1 -0.3634 0.4281 0.9342 27 1 -0.3633 0.5949 -0.8379 28 1 1.8935 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.9031 3.2252 1.2015 31 1 0.4384 2.2141 1.2166 32 1 1.5863 0.5103 2.5580 33 1 3.1070 1.4311 2.4721 34 1 1.7175 2.0895 3.3685 35 1 4.0032 1.6097 0.9262 36 1 3.9635 0.5700 -0.5280 37 1 4.7774 3.0671 -0.9468 38 1 0.2294 3.3087 -0.2076 39 1 -2.2489 3.6279 -1.2169 40 1 -1.2968 5.1010 -1.5198 41 1 -1.6479 4.8251 -3.9593 42 1 -2.5998 3.3521 -3.6556 43 1 -4.6435 5.2541 -6.0577 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886728362.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:37 Heat of formation + Delta-G solvation = -88.313260 kcal Electronic energy + Delta-G solvation = -23230.310212 eV Core-core repulsion = 19888.813452 eV Total energy + Delta-G solvation = -3341.496760 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.33622 -38.61767 -37.70086 -34.78920 -33.64513 -33.37352 -31.69392 -30.95509 -28.87896 -27.26726 -25.36783 -24.33757 -23.45455 -21.85125 -20.36739 -19.54897 -19.06768 -17.50119 -16.86534 -16.58984 -15.90854 -15.68087 -15.54564 -14.67793 -14.56683 -14.39180 -14.03742 -13.94317 -13.41795 -13.26301 -13.10809 -12.98282 -12.58819 -12.20699 -12.14205 -12.10127 -11.71878 -11.52557 -11.09494 -11.03838 -10.90826 -10.79293 -10.75492 -10.53193 -10.21382 -9.89426 -9.60350 -9.27029 -9.11501 -8.95502 -8.65715 -8.26675 -5.90590 -3.94754 2.51493 3.08378 3.35698 3.36434 3.42982 3.46303 3.59332 3.97917 4.18295 4.30279 4.47888 4.52250 4.73666 4.94710 5.04377 5.05297 5.11914 5.21723 5.27804 5.37518 5.44339 5.47035 5.53394 5.62634 5.80928 5.82823 5.84556 5.85899 5.99725 6.21477 6.27649 6.30977 6.54176 6.75466 6.86202 6.95069 7.80494 7.86958 7.94008 8.13934 8.22513 8.44576 8.83983 9.14169 9.68433 11.20434 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024757 B = 0.003890 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.734229 B = 7197.052679 C = 7641.939314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.106 4.106 3 C -0.077 4.077 4 C -0.120 4.120 5 C -0.152 4.152 6 C 0.109 3.891 7 N -0.737 5.737 8 C 0.503 3.497 9 O -0.506 6.506 10 C 0.126 3.874 11 H 0.123 0.877 12 N -0.726 5.726 13 C 0.513 3.487 14 O -0.522 6.522 15 C -0.128 4.128 16 C 0.037 3.963 17 C -0.525 4.525 18 H 0.056 0.944 19 C 0.058 3.942 20 N -0.889 5.889 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.408 0.592 38 H 0.400 0.600 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.024 0.976 42 H 0.024 0.976 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.873 -11.655 18.706 27.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.144 4.144 3 C -0.078 4.078 4 C -0.157 4.157 5 C -0.209 4.209 6 C -0.016 4.016 7 N -0.395 5.395 8 C 0.286 3.714 9 O -0.379 6.379 10 C 0.016 3.984 11 H 0.141 0.859 12 N -0.383 5.383 13 C 0.302 3.698 14 O -0.396 6.396 15 C -0.168 4.168 16 C -0.001 4.001 17 C -0.564 4.564 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.528 5.528 21 Si 0.720 3.280 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.211 1.211 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.247 0.753 38 H 0.237 0.763 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.043 0.957 42 H 0.042 0.958 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 15.843 -11.476 17.246 26.080 hybrid contribution -0.380 0.885 0.488 1.079 sum 15.464 -10.592 17.734 25.803 Atomic orbital electron populations 1.21852 0.94744 1.02136 1.02821 1.21527 0.97066 0.93182 1.02586 1.21869 0.94227 0.97135 0.94548 1.21564 1.01866 0.99165 0.93119 1.21835 1.01189 1.01029 0.96853 1.22240 0.94690 0.88995 0.95704 1.46183 1.13662 1.33578 1.46043 1.21475 0.85841 0.84488 0.79569 1.90807 1.83899 1.28705 1.34456 1.21495 0.85060 0.93213 0.98637 0.85913 1.46134 1.24410 1.55593 1.12192 1.21610 0.84590 0.79834 0.83798 1.90677 1.73097 1.52091 1.23717 1.21854 0.92578 0.97979 1.04344 1.18906 0.94114 0.97722 0.89351 1.21259 1.08332 1.32458 0.94308 0.92578 1.25025 0.97995 0.96160 0.95212 1.70018 1.38066 1.45375 0.99343 0.86547 0.83124 0.80191 0.78155 1.19770 1.21047 1.21050 0.92542 0.92335 0.91629 0.91343 0.90866 0.91424 0.90196 0.92028 0.92491 0.92376 0.89747 0.90751 0.75349 0.76286 0.90253 0.90251 0.95713 0.95803 0.93049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 9.27 37.16 0.34 -0.99 16 2 C -0.11 -0.72 4.49 -26.73 -0.12 -0.84 16 3 C -0.08 -0.60 0.37 -152.87 -0.06 -0.65 16 4 C -0.12 -0.81 3.44 -26.73 -0.09 -0.90 16 5 C -0.15 -0.74 9.33 37.16 0.35 -0.39 16 6 C 0.11 0.70 6.76 -3.12 -0.02 0.68 16 7 N -0.74 -7.06 6.24 -59.20 -0.37 -7.43 16 8 C 0.50 7.44 8.07 -10.86 -0.09 7.35 16 9 O -0.51 -10.39 18.02 5.55 0.10 -10.29 16 10 C 0.13 1.62 1.87 -67.94 -0.13 1.50 16 11 H 0.12 1.81 7.29 -51.93 -0.38 1.43 16 12 N -0.73 -10.54 4.27 -53.82 -0.23 -10.77 16 13 C 0.51 10.33 7.83 -10.98 -0.09 10.25 16 14 O -0.52 -12.94 15.63 5.56 0.09 -12.85 16 15 C -0.13 -2.69 5.64 -27.88 -0.16 -2.85 16 16 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 17 C -0.53 -15.24 9.11 -34.44 -0.31 -15.56 16 18 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -28.03 13.29 55.43 0.74 -27.29 16 21 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.44 6.83 -51.93 -0.35 0.08 16 27 H 0.06 0.74 6.75 -51.93 -0.35 0.39 16 28 H 0.07 0.47 8.11 -51.93 -0.42 0.05 16 29 H 0.07 0.36 6.72 -51.93 -0.35 0.01 16 30 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 31 H 0.08 0.56 5.48 -51.93 -0.28 0.28 16 32 H 0.06 0.28 6.80 -51.93 -0.35 -0.08 16 33 H 0.06 0.23 6.21 -51.93 -0.32 -0.09 16 34 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.08 0.37 6.02 -51.93 -0.31 0.06 16 36 H 0.07 0.39 7.88 -51.93 -0.41 -0.02 16 37 H 0.41 3.26 8.96 -40.82 -0.37 2.89 16 38 H 0.40 4.63 6.04 -40.82 -0.25 4.38 16 39 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 41 H 0.02 0.76 8.10 -51.93 -0.42 0.34 16 42 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 43 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 340.20 15.07 5.13 5.13 Total: -1.00 -38.16 340.20 -6.80 -44.95 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -6.64 Total: 1.42 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -0.59 Total: 0.10 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.14 Total: -45.50 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: 0.19 Total: -23.14 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -38.16 -6.80 -44.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886728362.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.358 kcal (2) G-P(sol) polarization free energy of solvation -38.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds