Wall clock time and date at job start Tue Mar 31 2020 05:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47237 * 2 1 4 4 C 1.53004 * 110.88686 * 59.02166 * 3 2 1 5 5 C 1.53001 * 109.46550 * 60.10131 * 4 3 2 6 6 C 1.54481 * 110.97094 * 182.83975 * 3 2 1 7 7 N 1.46764 * 105.47285 * 143.53230 * 6 3 2 8 8 C 1.34426 * 111.30129 * 342.98072 * 7 6 3 9 9 O 1.21283 * 124.94072 * 180.37073 * 8 7 6 10 10 C 1.51279 * 110.11535 * 0.41010 * 8 7 6 11 11 H 1.08996 * 110.48581 * 257.57466 * 10 8 7 12 12 N 1.46498 * 110.49015 * 134.93036 * 10 8 7 13 13 C 1.34780 * 119.99987 * 90.21808 * 12 10 8 14 14 O 1.21279 * 119.99906 * 0.02562 * 13 12 10 15 15 C 1.50702 * 119.99721 * 180.02562 * 13 12 10 16 16 C 1.53001 * 109.46544 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.46789 * 180.02562 * 16 15 13 18 18 H 1.08002 * 119.99832 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00031 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99978 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00181 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47086 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47043 * 119.99995 * 21 19 17 24 24 H 1.48503 * 109.47294 * 240.00428 * 21 19 17 25 25 H 1.09004 * 109.46907 * 174.61667 * 1 2 3 26 26 H 1.09000 * 109.47529 * 294.61731 * 1 2 3 27 27 H 1.08991 * 109.46879 * 54.62323 * 1 2 3 28 28 H 1.08996 * 109.47918 * 239.99555 * 2 1 3 29 29 H 1.09000 * 109.47364 * 119.99593 * 2 1 3 30 30 H 1.08998 * 109.46792 * 180.09856 * 4 3 2 31 31 H 1.08991 * 109.47183 * 300.10219 * 4 3 2 32 32 H 1.08991 * 109.47365 * 295.88151 * 5 4 3 33 33 H 1.08997 * 109.47360 * 55.88323 * 5 4 3 34 34 H 1.08999 * 109.46954 * 175.87893 * 5 4 3 35 35 H 1.09002 * 110.24449 * 262.52601 * 6 3 2 36 36 H 1.08990 * 110.24630 * 24.44292 * 6 3 2 37 37 H 0.96997 * 124.35485 * 163.00528 * 7 6 3 38 38 H 0.96999 * 119.99986 * 270.23221 * 12 10 8 39 39 H 1.08997 * 109.47519 * 300.00264 * 15 13 12 40 40 H 1.09001 * 109.46987 * 60.00786 * 15 13 12 41 41 H 1.08992 * 109.47576 * 299.99948 * 16 15 13 42 42 H 1.09001 * 109.47114 * 60.00524 * 16 15 13 43 43 H 0.97006 * 119.99907 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5282 2.2021 1.2256 5 6 2.0201 1.5083 2.4975 6 6 3.5826 1.4835 -0.0715 7 7 3.9051 2.6447 -0.9091 8 6 2.8362 3.0475 -1.6178 9 8 2.8282 3.9798 -2.3935 10 6 1.6444 2.1692 -1.3064 11 1 1.4808 1.4497 -2.1086 12 7 0.4465 2.9859 -1.0962 13 6 -0.3537 3.2890 -2.1375 14 8 -0.0823 2.8852 -3.2484 15 6 -1.5856 4.1296 -1.9214 16 6 -2.3109 4.3235 -3.2545 17 6 -3.5426 5.1647 -3.0385 18 1 -3.7840 5.5246 -2.0492 19 6 -4.3611 5.4748 -4.1037 20 7 -4.0673 5.0362 -5.3083 21 14 -5.8882 6.5169 -3.8359 22 1 -5.9935 6.8808 -2.4000 23 1 -5.7937 7.7528 -4.6537 24 1 -7.0910 5.7459 -4.2411 25 1 -0.3633 -1.0232 -0.0964 26 1 -0.3634 0.4281 0.9342 27 1 -0.3633 0.5949 -0.8379 28 1 1.8935 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.9031 3.2252 1.2015 31 1 0.4384 2.2141 1.2166 32 1 1.5863 0.5103 2.5580 33 1 3.1070 1.4311 2.4721 34 1 1.7175 2.0895 3.3685 35 1 4.0032 1.6097 0.9262 36 1 3.9635 0.5700 -0.5280 37 1 4.7774 3.0671 -0.9468 38 1 0.2294 3.3087 -0.2076 39 1 -2.2489 3.6279 -1.2169 40 1 -1.2968 5.1010 -1.5198 41 1 -1.6479 4.8251 -3.9593 42 1 -2.5998 3.3521 -3.6556 43 1 -4.6435 5.2541 -6.0577 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886728362.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:37 Heat of formation + Delta-G solvation = -118.686247 kcal Electronic energy + Delta-G solvation = -23231.627284 eV Core-core repulsion = 19888.813452 eV Total energy + Delta-G solvation = -3342.813832 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.33172 -40.19222 -38.75939 -35.83231 -35.56323 -34.83796 -33.02270 -32.19806 -29.91103 -28.35767 -27.20761 -24.91606 -24.26512 -23.63357 -21.62231 -21.07110 -19.81068 -18.86415 -18.42120 -17.67605 -17.40632 -17.04891 -16.46652 -16.26593 -16.23910 -15.53364 -15.16627 -14.96572 -14.55240 -14.29644 -14.20404 -14.05488 -13.78087 -13.64375 -13.30077 -13.23524 -12.85033 -12.74056 -12.45019 -12.26710 -12.19506 -11.95008 -11.77277 -11.64338 -11.48690 -11.40462 -11.30282 -11.28376 -10.78428 -10.58365 -10.13109 -9.95300 -8.18095 -6.32744 1.32187 1.41590 1.43851 1.57078 1.68220 2.14553 2.41361 2.51192 3.14795 3.19834 3.32157 3.65239 3.74178 3.98675 4.09752 4.37045 4.42989 4.50670 4.52774 4.56460 4.60334 4.62862 4.69387 4.76604 4.92474 5.01460 5.06347 5.15816 5.27444 5.33967 5.35511 5.38154 5.44400 5.49272 5.61252 5.65275 5.78773 5.84469 5.94583 6.16630 6.50436 6.85623 7.17542 7.31477 7.37697 8.95131 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024757 B = 0.003890 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.734229 B = 7197.052679 C = 7641.939314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.102 4.102 3 C -0.062 4.062 4 C -0.122 4.122 5 C -0.147 4.147 6 C 0.106 3.894 7 N -0.714 5.714 8 C 0.492 3.508 9 O -0.578 6.578 10 C 0.118 3.882 11 H 0.100 0.900 12 N -0.700 5.700 13 C 0.513 3.487 14 O -0.581 6.581 15 C -0.118 4.118 16 C 0.043 3.957 17 C -0.542 4.542 18 H 0.078 0.922 19 C -0.008 4.008 20 N -0.939 5.939 21 Si 0.977 3.023 22 H -0.251 1.251 23 H -0.282 1.282 24 H -0.278 1.278 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.028 0.972 28 H 0.066 0.934 29 H 0.108 0.892 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.122 0.878 36 H 0.098 0.902 37 H 0.419 0.581 38 H 0.417 0.583 39 H 0.112 0.888 40 H 0.097 0.903 41 H -0.025 1.025 42 H -0.015 1.015 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.333 -12.357 22.912 30.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.139 4.139 3 C -0.064 4.064 4 C -0.159 4.159 5 C -0.204 4.204 6 C -0.017 4.017 7 N -0.370 5.370 8 C 0.277 3.723 9 O -0.456 6.456 10 C 0.009 3.991 11 H 0.118 0.882 12 N -0.356 5.356 13 C 0.302 3.698 14 O -0.459 6.459 15 C -0.158 4.158 16 C 0.006 3.994 17 C -0.580 4.580 18 H 0.096 0.904 19 C -0.206 4.206 20 N -0.579 5.579 21 Si 0.800 3.200 22 H -0.174 1.174 23 H -0.208 1.208 24 H -0.204 1.204 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.047 0.953 28 H 0.085 0.915 29 H 0.126 0.874 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.140 0.860 36 H 0.116 0.884 37 H 0.259 0.741 38 H 0.258 0.742 39 H 0.130 0.870 40 H 0.116 0.884 41 H -0.007 1.007 42 H 0.004 0.996 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 16.362 -12.221 21.582 29.713 hybrid contribution -0.436 1.019 -0.788 1.360 sum 15.926 -11.202 20.794 28.488 Atomic orbital electron populations 1.21855 0.96170 1.01813 1.01855 1.21554 0.95730 0.92435 1.04200 1.21927 0.95284 0.97267 0.91873 1.21600 1.01736 0.98938 0.93653 1.21816 1.02145 1.01163 0.95270 1.22623 0.93496 0.88440 0.97183 1.46127 1.12842 1.33600 1.44442 1.21774 0.87553 0.83817 0.79187 1.90770 1.85203 1.31917 1.37708 1.21713 0.83545 0.92559 1.01302 0.88226 1.45752 1.23967 1.54434 1.11486 1.21410 0.84987 0.79415 0.83991 1.90655 1.74498 1.54544 1.26202 1.21634 0.93277 0.99725 1.01118 1.18677 0.94008 0.95018 0.91746 1.21736 1.08497 1.32382 0.95365 0.90437 1.26182 1.02128 0.97578 0.94668 1.70207 1.39899 1.47115 1.00697 0.85230 0.77834 0.77736 0.79161 1.17434 1.20791 1.20363 0.92114 0.91057 0.95292 0.91509 0.87365 0.92165 0.90580 0.91110 0.90973 0.92096 0.86022 0.88420 0.74113 0.74244 0.87008 0.88438 1.00697 0.99634 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 9.27 71.98 0.67 -1.77 16 2 C -0.10 -1.07 4.49 30.59 0.14 -0.93 16 3 C -0.06 -0.81 0.37 -51.12 -0.02 -0.83 16 4 C -0.12 -1.26 3.44 30.60 0.11 -1.15 16 5 C -0.15 -0.72 9.33 71.98 0.67 -0.05 16 6 C 0.11 0.94 6.76 86.83 0.59 1.53 16 7 N -0.71 -12.39 6.24 -459.80 -2.87 -15.26 16 8 C 0.49 14.81 8.07 87.90 0.71 15.52 16 9 O -0.58 -25.07 18.02 -3.04 -0.05 -25.13 16 10 C 0.12 3.08 1.87 44.99 0.08 3.16 16 11 H 0.10 3.12 7.29 -2.39 -0.02 3.10 16 12 N -0.70 -20.68 4.27 -442.56 -1.89 -22.57 16 13 C 0.51 21.78 7.83 87.66 0.69 22.46 16 14 O -0.58 -31.20 15.63 -3.03 -0.05 -31.25 16 15 C -0.12 -5.09 5.64 29.85 0.17 -4.92 16 16 C 0.04 2.54 4.26 29.85 0.13 2.67 16 17 C -0.54 -32.01 9.11 25.60 0.23 -31.77 16 18 H 0.08 4.15 7.74 -2.91 -0.02 4.13 16 19 C -0.01 -0.50 5.46 84.65 0.46 -0.04 16 20 N -0.94 -61.63 13.29 21.45 0.28 -61.34 16 21 Si 0.98 45.52 29.54 68.60 2.03 47.55 16 22 H -0.25 -10.72 7.11 99.48 0.71 -10.01 16 23 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 25 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.07 0.89 6.83 -2.39 -0.02 0.87 16 27 H 0.03 0.65 6.75 -2.39 -0.02 0.64 16 28 H 0.07 0.77 8.11 -2.39 -0.02 0.75 16 29 H 0.11 0.48 6.72 -2.39 -0.02 0.47 16 30 H 0.06 0.74 8.08 -2.39 -0.02 0.72 16 31 H 0.08 0.86 5.48 -2.39 -0.01 0.84 16 32 H 0.07 0.26 6.80 -2.39 -0.02 0.24 16 33 H 0.07 0.16 6.21 -2.39 -0.01 0.14 16 34 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.12 0.34 6.02 -2.39 -0.01 0.32 16 36 H 0.10 0.56 7.88 -2.39 -0.02 0.55 16 37 H 0.42 5.85 8.96 -92.71 -0.83 5.02 16 38 H 0.42 9.28 6.04 -92.71 -0.56 8.72 16 39 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 40 H 0.10 3.85 8.14 -2.39 -0.02 3.83 16 41 H -0.03 -1.73 8.10 -2.39 -0.02 -1.75 16 42 H -0.01 -0.97 8.10 -2.39 -0.02 -0.99 16 43 H 0.26 16.05 8.31 -92.70 -0.77 15.28 16 Total: -1.00 -91.90 340.20 1.71 -90.19 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -0.36 Total: 13.94 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: 4.62 Total: 3.88 kcal Atomic # 7 Polarization: -94.70 SS G_CDS: -4.47 Total: -99.17 kcal Atomic # 8 Polarization: -56.27 SS G_CDS: -0.10 Total: -56.37 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -91.90 1.71 -90.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886728362.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.499 kcal (2) G-P(sol) polarization free energy of solvation -91.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds