Wall clock time and date at job start Tue Mar 31 2020 05:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 110.80005 * 2 1 4 4 C 1.54938 * 110.74184 * 236.71095 * 2 1 3 5 5 N 1.48121 * 103.25494 * 279.04264 * 4 2 1 6 6 C 1.34773 * 127.03791 * 140.74431 * 5 4 2 7 7 O 1.21284 * 120.00117 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00084 * 179.97438 * 6 5 4 9 9 H 1.08999 * 110.27475 * 305.62782 * 8 6 5 10 10 C 1.54943 * 110.31059 * 67.83178 * 8 6 5 11 11 C 1.55311 * 100.94025 * 155.36326 * 10 8 6 12 12 C 1.54386 * 102.25210 * 325.86173 * 11 10 8 13 13 O 1.43242 * 107.58784 * 21.36175 * 12 11 10 14 14 C 1.47491 * 105.92977 * 320.70304 * 5 4 2 15 15 C 1.54005 * 107.08149 * 25.44956 * 14 5 4 16 16 H 1.08998 * 110.32596 * 117.68651 * 15 14 5 17 17 N 1.46498 * 110.32393 * 239.80114 * 15 14 5 18 18 C 1.36943 * 119.99752 * 273.26898 * 17 15 14 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 15 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 15 21 21 N 1.31624 * 119.99698 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00072 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47159 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47290 * 120.00044 * 22 20 18 25 25 H 1.48503 * 109.47163 * 240.00049 * 22 20 18 26 26 H 1.09002 * 109.46998 * 296.70990 * 1 2 3 27 27 H 1.09004 * 109.46667 * 56.70947 * 1 2 3 28 28 H 1.08997 * 109.47249 * 176.71005 * 1 2 3 29 29 H 1.09008 * 109.47482 * 183.28879 * 3 2 1 30 30 H 1.09002 * 109.47390 * 303.29240 * 3 2 1 31 31 H 1.09001 * 109.47222 * 63.29065 * 3 2 1 32 32 H 1.08993 * 110.66831 * 160.59855 * 4 2 1 33 33 H 1.08999 * 110.80540 * 37.54419 * 4 2 1 34 34 H 1.09002 * 111.12246 * 273.27601 * 10 8 6 35 35 H 1.09001 * 111.12576 * 37.44111 * 10 8 6 36 36 H 1.09005 * 110.84261 * 207.67484 * 11 10 8 37 37 H 1.08994 * 110.85249 * 84.05538 * 11 10 8 38 38 H 1.08993 * 109.83411 * 261.85048 * 12 11 10 39 39 H 1.08999 * 109.90427 * 140.91436 * 12 11 10 40 40 H 1.08992 * 109.91444 * 266.08980 * 14 5 4 41 41 H 1.08998 * 110.06905 * 144.89527 * 14 5 4 42 42 H 0.97001 * 120.00384 * 93.55253 * 17 15 14 43 43 H 0.96999 * 119.99739 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0733 1.4303 0.0000 4 6 2.0787 -0.7953 -1.2112 5 7 1.9871 -2.2039 -0.7623 6 6 1.6234 -3.2698 -1.5025 7 8 1.3268 -3.1249 -2.6696 8 6 1.5852 -4.6417 -0.8801 9 1 2.5458 -4.8750 -0.4209 10 6 0.4499 -4.7240 0.1711 11 6 0.1686 -6.2514 0.1822 12 6 0.4224 -6.6420 -1.2897 13 8 1.2528 -5.6289 -1.8693 14 6 2.3763 -2.2015 0.6603 15 6 2.0775 -0.7937 1.2087 16 1 1.3292 -0.8463 1.9994 17 7 3.3053 -0.1724 1.7115 18 6 3.7085 -0.3981 3.0006 19 1 3.1238 -1.0378 3.6451 20 6 4.8688 0.1952 3.4789 21 7 5.5810 0.9751 2.6935 22 14 5.4192 -0.1134 5.2370 23 1 4.4524 -1.0201 5.9065 24 1 6.7646 -0.7421 5.2314 25 1 5.4787 1.1764 5.9707 26 1 -0.3633 0.4619 0.9180 27 1 -0.3633 0.5641 -0.8591 28 1 -0.3633 -1.0259 -0.0590 29 1 3.1615 1.4056 -0.0590 30 1 1.6750 1.9703 -0.8590 31 1 1.7705 1.9339 0.9180 32 1 3.1145 -0.5226 -1.4131 33 1 1.4603 -0.6320 -2.0938 34 1 0.7927 -4.3806 1.1472 35 1 -0.4277 -4.1652 -0.1539 36 1 -0.8647 -6.4534 0.4645 37 1 0.8614 -6.7687 0.8458 38 1 -0.5246 -6.6957 -1.8266 39 1 0.9287 -7.6061 -1.3358 40 1 3.4402 -2.4185 0.7545 41 1 1.7961 -2.9440 1.2081 42 1 3.8304 0.4022 1.1327 43 1 6.3919 1.3894 3.0276 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995405053.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:09 Heat of formation + Delta-G solvation = -61.078027 kcal Electronic energy + Delta-G solvation = -23582.084971 eV Core-core repulsion = 20241.769220 eV Total energy + Delta-G solvation = -3340.315752 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.41911 -39.10737 -37.47087 -34.10637 -33.29475 -32.19194 -30.84202 -29.94508 -27.81430 -26.82468 -26.13208 -24.02205 -23.13071 -21.88895 -21.56352 -19.21728 -18.60097 -17.52316 -17.22484 -16.34738 -15.71893 -15.49494 -15.32327 -14.76591 -14.28917 -14.06315 -13.91596 -13.66177 -13.30727 -13.07015 -12.83975 -12.50354 -12.21872 -11.93274 -11.84368 -11.72050 -11.66667 -11.55117 -11.30242 -11.10445 -10.96591 -10.94542 -10.57510 -10.48078 -10.22768 -9.99379 -9.84036 -9.68538 -9.32192 -9.03377 -8.32545 -7.10929 -5.88205 -3.18265 2.76226 2.96621 3.36111 3.41903 3.44431 3.88562 4.23591 4.48412 4.54920 4.64985 4.83433 4.97603 4.98572 5.07620 5.17611 5.22577 5.40508 5.46587 5.49753 5.55733 5.60520 5.63524 5.73091 5.76160 5.87527 5.90395 5.95579 6.09169 6.14606 6.26023 6.26352 6.35608 6.40767 6.47307 6.59738 6.80306 6.81636 6.93971 7.60270 7.83704 8.29925 8.39291 9.42190 9.97009 10.31665 11.34009 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017739 B = 0.005052 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.048379 B = 5541.296252 C = 6486.582322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.088 4.088 3 C -0.125 4.125 4 C 0.119 3.881 5 N -0.610 5.610 6 C 0.530 3.470 7 O -0.537 6.537 8 C 0.069 3.931 9 H 0.096 0.904 10 C -0.146 4.146 11 C -0.154 4.154 12 C 0.049 3.951 13 O -0.356 6.356 14 C 0.067 3.933 15 C 0.177 3.823 16 H 0.065 0.935 17 N -0.715 5.715 18 C -0.247 4.247 19 H 0.072 0.928 20 C -0.008 4.008 21 N -0.929 5.929 22 Si 0.906 3.094 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.044 0.956 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.389 0.611 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.086 -9.242 -3.948 14.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.090 4.090 3 C -0.183 4.183 4 C -0.003 4.003 5 N -0.345 5.345 6 C 0.317 3.683 7 O -0.414 6.414 8 C 0.009 3.991 9 H 0.114 0.886 10 C -0.183 4.183 11 C -0.191 4.191 12 C -0.028 4.028 13 O -0.275 6.275 14 C -0.059 4.059 15 C 0.065 3.935 16 H 0.083 0.917 17 N -0.357 5.357 18 C -0.378 4.378 19 H 0.090 0.910 20 C -0.204 4.204 21 N -0.576 5.576 22 Si 0.737 3.263 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.218 1.218 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.115 0.885 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.226 0.774 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.151 -9.294 -4.655 15.245 hybrid contribution 0.631 -0.115 1.130 1.299 sum -10.520 -9.409 -3.525 14.547 Atomic orbital electron populations 1.21699 0.94126 1.01252 1.01526 1.21916 0.95435 0.96159 0.95447 1.21593 1.01746 0.93693 1.01257 1.22537 1.01129 0.79458 0.97215 1.48723 1.66034 1.07137 1.12619 1.19957 0.77320 0.84932 0.86107 1.90684 1.49010 1.85393 1.16291 1.22765 0.99838 0.87700 0.88847 0.88606 1.23297 0.98419 0.96838 0.99792 1.23134 1.03318 0.95597 0.97100 1.23190 0.95032 0.91608 0.92971 1.88519 1.69432 1.35093 1.34435 1.23624 1.00975 1.01928 0.79347 1.21069 0.90392 0.88976 0.93087 0.91700 1.42652 1.24155 1.56559 1.12368 1.19274 1.05432 1.24418 0.88647 0.91039 1.24739 0.97855 0.99749 0.98091 1.69662 1.17397 1.35285 1.35299 0.86147 0.78305 0.77369 0.84484 1.20534 1.21853 1.21826 0.92330 0.92921 0.93104 0.91392 0.93699 0.91696 0.90894 0.90534 0.88470 0.89826 0.89631 0.90042 0.91200 0.91104 0.90322 0.91843 0.77429 0.93399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.72 8.50 37.16 0.32 -1.41 16 2 C -0.09 -1.36 0.93 -152.64 -0.14 -1.50 16 3 C -0.13 -1.98 7.83 37.16 0.29 -1.69 16 4 C 0.12 1.91 5.98 -2.13 -0.01 1.90 16 5 N -0.61 -9.88 3.19 -169.76 -0.54 -10.42 16 6 C 0.53 9.07 7.26 -10.99 -0.08 8.99 16 7 O -0.54 -11.15 16.76 -13.77 -0.23 -11.38 16 8 C 0.07 0.97 3.26 -26.86 -0.09 0.88 16 9 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 10 C -0.15 -1.57 5.92 -24.48 -0.14 -1.71 16 11 C -0.15 -1.31 7.02 -24.78 -0.17 -1.49 16 12 C 0.05 0.50 7.79 37.88 0.30 0.80 16 13 O -0.36 -5.38 10.61 -54.56 -0.58 -5.96 16 14 C 0.07 1.08 6.50 -2.98 -0.02 1.06 16 15 C 0.18 3.13 3.09 -66.56 -0.21 2.93 16 16 H 0.07 1.15 7.83 -51.93 -0.41 0.75 16 17 N -0.71 -16.01 4.51 -52.09 -0.23 -16.24 16 18 C -0.25 -6.23 9.97 -15.06 -0.15 -6.39 16 19 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 20 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 21 N -0.93 -26.41 13.06 55.49 0.72 -25.69 16 22 Si 0.91 21.14 29.55 -169.99 -5.02 16.12 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.68 8.07 -51.93 -0.42 0.26 16 29 H 0.07 1.21 6.23 -51.92 -0.32 0.89 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.07 1.22 8.02 -51.93 -0.42 0.81 16 33 H 0.08 1.22 7.76 -51.93 -0.40 0.82 16 34 H 0.10 0.95 6.20 -51.93 -0.32 0.63 16 35 H 0.08 0.94 8.05 -51.93 -0.42 0.52 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.08 1.45 7.92 -51.93 -0.41 1.03 16 41 H 0.06 0.88 5.27 -51.93 -0.27 0.60 16 42 H 0.39 9.32 5.51 -40.82 -0.23 9.09 16 43 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 338.82 15.07 5.11 5.11 Total: -1.00 -30.81 338.82 -7.96 -38.77 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -6.97 Total: 7.62 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -0.21 Total: 2.07 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: -0.05 Total: -52.35 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.81 Total: -17.34 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.81 -7.96 -38.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995405053.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.308 kcal (2) G-P(sol) polarization free energy of solvation -30.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds