Wall clock time and date at job start Tue Mar 31 2020 05:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 110.45338 * 2 1 4 4 O 1.21287 * 119.99641 * 246.12159 * 3 2 1 5 5 N 1.34770 * 119.99904 * 66.11688 * 3 2 1 6 6 C 1.46930 * 120.62826 * 174.85776 * 5 3 2 7 7 C 1.53192 * 108.77830 * 233.88657 * 6 5 3 8 8 C 1.53042 * 109.31046 * 305.36930 * 7 6 5 9 9 C 1.53034 * 109.54141 * 61.36213 * 8 7 6 10 10 H 1.09000 * 109.49926 * 58.58728 * 9 8 7 11 11 N 1.46502 * 109.52557 * 178.66896 * 9 8 7 12 12 C 1.36935 * 119.99927 * 274.85328 * 11 9 8 13 13 H 1.07996 * 120.00246 * 0.02562 * 12 11 9 14 14 C 1.38812 * 119.99925 * 179.97438 * 12 11 9 15 15 N 1.31624 * 119.99980 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00134 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47049 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.47278 * 120.00297 * 16 14 12 19 19 H 1.48496 * 109.47689 * 240.00345 * 16 14 12 20 20 C 1.46923 * 120.63324 * 355.14004 * 5 3 2 21 21 C 1.54508 * 110.51233 * 237.39874 * 2 1 3 22 22 C 1.54803 * 103.91101 * 241.18151 * 21 2 1 23 23 O 1.44430 * 104.85170 * 336.11848 * 22 21 2 24 24 C 1.44423 * 105.27801 * 40.46036 * 23 22 21 25 25 H 1.09003 * 109.47481 * 66.15151 * 1 2 3 26 26 H 1.09004 * 109.46756 * 186.14455 * 1 2 3 27 27 H 1.09001 * 109.47410 * 306.14414 * 1 2 3 28 28 H 1.09000 * 109.58609 * 353.67561 * 6 5 3 29 29 H 1.08996 * 109.58747 * 114.09750 * 6 5 3 30 30 H 1.08993 * 109.50148 * 185.41723 * 7 6 5 31 31 H 1.08999 * 109.49719 * 65.31299 * 7 6 5 32 32 H 1.09008 * 109.45933 * 301.33904 * 8 7 6 33 33 H 1.08995 * 109.44872 * 181.38229 * 8 7 6 34 34 H 0.97003 * 119.99754 * 94.85280 * 11 9 8 35 35 H 0.97002 * 119.99866 * 179.97438 * 15 14 12 36 36 H 1.08997 * 109.58745 * 245.89764 * 20 5 3 37 37 H 1.09001 * 109.58207 * 6.18745 * 20 5 3 38 38 H 1.09002 * 110.51273 * 359.85365 * 21 2 1 39 39 H 1.09000 * 110.51736 * 122.57113 * 21 2 1 40 40 H 1.08997 * 110.38882 * 217.25141 * 22 21 2 41 41 H 1.08999 * 110.39690 * 94.98873 * 22 21 2 42 42 H 1.08991 * 110.37293 * 200.65547 * 24 23 22 43 43 H 1.09006 * 110.46414 * 78.36620 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0566 1.4121 0.0000 4 8 2.6669 1.8316 -0.9605 5 7 1.8493 2.2085 1.0672 6 6 2.4512 3.5474 1.1302 7 6 3.2412 3.6720 2.4368 8 6 2.3245 3.3388 3.6161 9 6 1.8283 1.8969 3.4873 10 1 2.6818 1.2193 3.4622 11 7 0.9764 1.5680 4.6329 12 6 1.5396 1.1274 5.8007 13 1 2.6117 1.0227 5.8774 14 6 0.7324 0.8162 6.8863 15 7 -0.5742 0.9443 6.7930 16 14 1.5005 0.2145 8.4792 17 1 2.9765 0.1575 8.3264 18 1 1.1529 1.1485 9.5802 19 1 0.9828 -1.1404 8.7976 20 6 1.0223 1.7522 2.1926 21 6 2.0714 -0.7797 -1.2191 22 6 2.8802 -1.9398 -0.5896 23 8 3.2418 -1.4676 0.7265 24 6 2.0713 -0.7795 1.2188 25 1 -0.3634 0.4155 -0.9399 26 1 -0.3633 -1.0218 0.1100 27 1 -0.3634 0.6061 0.8299 28 1 3.1224 3.6865 0.2827 29 1 1.6658 4.3027 1.1046 30 1 3.6127 4.6913 2.5415 31 1 4.0813 2.9777 2.4216 32 1 1.4716 4.0177 3.6163 33 1 2.8777 3.4506 4.5486 34 1 0.0135 1.6624 4.5641 35 1 -1.1383 0.7265 7.5516 36 1 0.1204 2.3611 2.2537 37 1 0.7487 0.7075 2.0448 38 1 1.2491 -1.1674 -1.8205 39 1 2.7200 -0.1440 -1.8218 40 1 3.7744 -2.1428 -1.1788 41 1 2.2641 -2.8359 -0.5152 42 1 2.3442 -0.0913 2.0187 43 1 1.3288 -1.4952 1.5718 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000566083.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:38 Heat of formation + Delta-G solvation = -62.681996 kcal Electronic energy + Delta-G solvation = -24016.898279 eV Core-core repulsion = 20676.512974 eV Total energy + Delta-G solvation = -3340.385305 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.02060 -38.65013 -37.31960 -34.38254 -34.05425 -32.19116 -31.37389 -29.62566 -28.27490 -26.52753 -25.55795 -23.90181 -23.02128 -22.56291 -21.20781 -19.94387 -18.66613 -17.40915 -16.74864 -16.46896 -15.98558 -15.51702 -15.00432 -14.68799 -14.50530 -14.22053 -13.91243 -13.59754 -13.45716 -13.35341 -12.90626 -12.80621 -12.66122 -12.25915 -12.06053 -11.69138 -11.45900 -11.13709 -11.02594 -11.00036 -10.92905 -10.76315 -10.63529 -10.44192 -10.38231 -10.11349 -9.89927 -9.75864 -9.42056 -8.98438 -8.45492 -7.07550 -5.85527 -3.15529 2.67336 3.06100 3.39013 3.46057 3.47303 3.96466 4.25908 4.40944 4.55518 4.81211 4.87934 5.04963 5.12766 5.17615 5.23341 5.26765 5.36209 5.46825 5.50849 5.52850 5.55327 5.63985 5.65966 5.71452 5.75543 5.81710 5.87962 5.91441 6.00632 6.09492 6.11040 6.29502 6.35810 6.38419 6.68198 6.74305 6.79570 6.95028 7.51817 7.64702 8.24128 8.32273 9.44225 9.97012 10.32383 11.36779 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018097 B = 0.005472 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.855406 B = 5115.647587 C = 5883.301374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C 0.535 3.465 4 O -0.547 6.547 5 N -0.602 5.602 6 C 0.113 3.887 7 C -0.133 4.133 8 C -0.137 4.137 9 C 0.165 3.835 10 H 0.053 0.947 11 N -0.721 5.721 12 C -0.240 4.240 13 H 0.072 0.928 14 C -0.010 4.010 15 N -0.931 5.931 16 Si 0.906 3.094 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.291 1.291 20 C 0.085 3.915 21 C -0.141 4.141 22 C 0.044 3.956 23 O -0.369 6.369 24 C 0.047 3.953 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.059 0.941 42 H 0.110 0.890 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.434 -0.697 -14.558 14.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.120 4.120 3 C 0.322 3.678 4 O -0.425 6.425 5 N -0.334 5.334 6 C -0.009 4.009 7 C -0.172 4.172 8 C -0.178 4.178 9 C 0.054 3.946 10 H 0.071 0.929 11 N -0.362 5.362 12 C -0.371 4.371 13 H 0.090 0.910 14 C -0.206 4.206 15 N -0.579 5.579 16 Si 0.737 3.263 17 H -0.205 1.205 18 H -0.218 1.218 19 H -0.218 1.218 20 C -0.038 4.038 21 C -0.179 4.179 22 C -0.033 4.033 23 O -0.287 6.287 24 C -0.030 4.030 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.114 0.886 38 H 0.100 0.900 39 H 0.115 0.885 40 H 0.109 0.891 41 H 0.078 0.922 42 H 0.128 0.872 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.059 -0.570 -14.798 15.122 hybrid contribution -0.281 -0.173 0.977 1.031 sum 2.778 -0.743 -13.821 14.117 Atomic orbital electron populations 1.22094 0.91217 1.03598 1.03485 1.22121 0.98051 0.93600 0.98209 1.20154 0.78930 0.86676 0.82001 1.90615 1.42424 1.75332 1.34132 1.48021 1.50394 1.16330 1.18700 1.21617 0.97332 0.82963 0.98987 1.21944 0.98866 1.01575 0.94857 1.22270 0.98788 0.99518 0.97178 1.20547 0.93587 0.94092 0.86375 0.92910 1.42315 1.05493 1.79129 1.09258 1.19245 0.91995 1.36318 0.89533 0.91021 1.24730 0.95386 1.02158 0.98327 1.69664 1.02479 1.54784 1.31021 0.86138 0.78309 0.78123 0.83748 1.20485 1.21844 1.21789 1.22559 0.93988 1.01136 0.86151 1.23099 1.00835 0.97116 0.96848 1.23488 0.99487 0.95980 0.84369 1.89182 1.35036 1.73686 1.30842 1.23944 0.88477 0.95335 0.95262 0.91659 0.90925 0.90526 0.89516 0.91667 0.91305 0.91857 0.92419 0.91445 0.78196 0.93471 0.91067 0.88585 0.90006 0.88456 0.89116 0.92248 0.87239 0.90695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 7.96 37.16 0.30 -1.30 16 2 C -0.12 -1.52 0.69 -154.09 -0.11 -1.63 16 3 C 0.53 8.32 6.51 -10.99 -0.07 8.25 16 4 O -0.55 -9.83 14.76 5.55 0.08 -9.75 16 5 N -0.60 -8.94 2.90 -172.76 -0.50 -9.44 16 6 C 0.11 1.57 6.42 -3.71 -0.02 1.54 16 7 C -0.13 -1.87 6.08 -26.61 -0.16 -2.03 16 8 C -0.14 -2.30 5.47 -26.69 -0.15 -2.45 16 9 C 0.16 3.02 2.68 -67.81 -0.18 2.84 16 10 H 0.05 1.04 6.98 -51.93 -0.36 0.68 16 11 N -0.72 -16.55 5.12 -53.31 -0.27 -16.82 16 12 C -0.24 -6.28 9.93 -15.06 -0.15 -6.43 16 13 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 14 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 15 N -0.93 -26.79 13.06 55.49 0.72 -26.06 16 16 Si 0.91 21.71 29.55 -169.99 -5.02 16.68 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 20 C 0.08 1.29 3.57 -3.71 -0.01 1.28 16 21 C -0.14 -1.65 6.33 -24.99 -0.16 -1.81 16 22 C 0.04 0.51 7.64 38.11 0.29 0.80 16 23 O -0.37 -5.69 11.65 -35.23 -0.41 -6.10 16 24 C 0.05 0.67 5.37 37.93 0.20 0.87 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.67 8.00 -51.93 -0.42 0.26 16 27 H 0.08 0.87 5.29 -51.93 -0.27 0.60 16 28 H 0.09 1.24 7.03 -51.93 -0.37 0.87 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 34 H 0.38 9.31 7.80 -40.82 -0.32 8.99 16 35 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.10 1.41 3.23 -51.93 -0.17 1.24 16 38 H 0.08 0.77 7.73 -51.93 -0.40 0.36 16 39 H 0.10 1.31 6.54 -51.93 -0.34 0.97 16 40 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.11 1.76 4.46 -51.93 -0.23 1.53 16 43 H 0.07 0.98 7.77 -51.93 -0.40 0.58 16 LS Contribution 326.76 15.07 4.92 4.92 Total: -1.00 -30.44 326.76 -7.42 -37.86 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -6.63 Total: 9.14 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -0.32 Total: -0.44 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: -0.05 Total: -52.32 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.33 Total: -15.85 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.44 -7.42 -37.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000566083.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.821 kcal (2) G-P(sol) polarization free energy of solvation -30.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds