Wall clock time and date at job start Tue Mar 31 2020 05:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 110.45338 * 2 1 4 4 O 1.21287 * 119.99641 * 246.12159 * 3 2 1 5 5 N 1.34770 * 119.99904 * 66.11688 * 3 2 1 6 6 C 1.46930 * 120.62826 * 174.85776 * 5 3 2 7 7 C 1.53192 * 108.77830 * 233.88657 * 6 5 3 8 8 C 1.53042 * 109.31046 * 305.36930 * 7 6 5 9 9 C 1.53034 * 109.54141 * 61.36213 * 8 7 6 10 10 H 1.09000 * 109.49926 * 58.58728 * 9 8 7 11 11 N 1.46502 * 109.52557 * 178.66896 * 9 8 7 12 12 C 1.36935 * 119.99927 * 274.85328 * 11 9 8 13 13 H 1.07996 * 120.00246 * 0.02562 * 12 11 9 14 14 C 1.38812 * 119.99925 * 179.97438 * 12 11 9 15 15 N 1.31624 * 119.99980 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00134 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47049 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.47278 * 120.00297 * 16 14 12 19 19 H 1.48496 * 109.47689 * 240.00345 * 16 14 12 20 20 C 1.46923 * 120.63324 * 355.14004 * 5 3 2 21 21 C 1.54508 * 110.51233 * 237.39874 * 2 1 3 22 22 C 1.54803 * 103.91101 * 241.18151 * 21 2 1 23 23 O 1.44430 * 104.85170 * 336.11848 * 22 21 2 24 24 C 1.44423 * 105.27801 * 40.46036 * 23 22 21 25 25 H 1.09003 * 109.47481 * 66.15151 * 1 2 3 26 26 H 1.09004 * 109.46756 * 186.14455 * 1 2 3 27 27 H 1.09001 * 109.47410 * 306.14414 * 1 2 3 28 28 H 1.09000 * 109.58609 * 353.67561 * 6 5 3 29 29 H 1.08996 * 109.58747 * 114.09750 * 6 5 3 30 30 H 1.08993 * 109.50148 * 185.41723 * 7 6 5 31 31 H 1.08999 * 109.49719 * 65.31299 * 7 6 5 32 32 H 1.09008 * 109.45933 * 301.33904 * 8 7 6 33 33 H 1.08995 * 109.44872 * 181.38229 * 8 7 6 34 34 H 0.97003 * 119.99754 * 94.85280 * 11 9 8 35 35 H 0.97002 * 119.99866 * 179.97438 * 15 14 12 36 36 H 1.08997 * 109.58745 * 245.89764 * 20 5 3 37 37 H 1.09001 * 109.58207 * 6.18745 * 20 5 3 38 38 H 1.09002 * 110.51273 * 359.85365 * 21 2 1 39 39 H 1.09000 * 110.51736 * 122.57113 * 21 2 1 40 40 H 1.08997 * 110.38882 * 217.25141 * 22 21 2 41 41 H 1.08999 * 110.39690 * 94.98873 * 22 21 2 42 42 H 1.08991 * 110.37293 * 200.65547 * 24 23 22 43 43 H 1.09006 * 110.46414 * 78.36620 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0566 1.4121 0.0000 4 8 2.6669 1.8316 -0.9605 5 7 1.8493 2.2085 1.0672 6 6 2.4512 3.5474 1.1302 7 6 3.2412 3.6720 2.4368 8 6 2.3245 3.3388 3.6161 9 6 1.8283 1.8969 3.4873 10 1 2.6818 1.2193 3.4622 11 7 0.9764 1.5680 4.6329 12 6 1.5396 1.1274 5.8007 13 1 2.6117 1.0227 5.8774 14 6 0.7324 0.8162 6.8863 15 7 -0.5742 0.9443 6.7930 16 14 1.5005 0.2145 8.4792 17 1 2.9765 0.1575 8.3264 18 1 1.1529 1.1485 9.5802 19 1 0.9828 -1.1404 8.7976 20 6 1.0223 1.7522 2.1926 21 6 2.0714 -0.7797 -1.2191 22 6 2.8802 -1.9398 -0.5896 23 8 3.2418 -1.4676 0.7265 24 6 2.0713 -0.7795 1.2188 25 1 -0.3634 0.4155 -0.9399 26 1 -0.3633 -1.0218 0.1100 27 1 -0.3634 0.6061 0.8299 28 1 3.1224 3.6865 0.2827 29 1 1.6658 4.3027 1.1046 30 1 3.6127 4.6913 2.5415 31 1 4.0813 2.9777 2.4216 32 1 1.4716 4.0177 3.6163 33 1 2.8777 3.4506 4.5486 34 1 0.0135 1.6624 4.5641 35 1 -1.1383 0.7265 7.5516 36 1 0.1204 2.3611 2.2537 37 1 0.7487 0.7075 2.0448 38 1 1.2491 -1.1674 -1.8205 39 1 2.7200 -0.1440 -1.8218 40 1 3.7744 -2.1428 -1.1788 41 1 2.2641 -2.8359 -0.5152 42 1 2.3442 -0.0913 2.0187 43 1 1.3288 -1.4952 1.5718 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000566083.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:38 Heat of formation + Delta-G solvation = -83.010584 kcal Electronic energy + Delta-G solvation = -24017.779793 eV Core-core repulsion = 20676.512974 eV Total energy + Delta-G solvation = -3341.266819 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.17306 -39.80629 -38.67696 -36.07320 -35.15450 -33.66970 -32.90274 -30.69272 -29.85909 -27.50218 -26.80721 -25.75710 -24.08457 -23.77996 -22.51828 -21.22756 -19.94551 -19.17353 -17.95835 -17.69206 -17.10118 -16.75261 -16.50260 -16.01170 -15.80157 -15.50759 -15.33073 -15.15412 -14.83919 -14.50424 -14.26355 -14.02266 -13.75417 -13.38949 -13.22513 -12.90869 -12.86993 -12.71325 -12.44489 -12.35158 -12.19030 -12.09450 -12.02106 -11.87484 -11.78510 -11.59030 -11.54292 -11.05756 -10.86153 -10.57159 -9.73105 -9.00289 -7.93643 -5.21774 1.46102 1.48597 1.50402 1.58657 1.88267 2.57256 2.95978 3.20645 3.36877 3.40212 3.75044 3.86366 3.89879 3.96745 4.02073 4.05712 4.17597 4.27504 4.32146 4.33191 4.42979 4.54081 4.62545 4.68268 4.70576 4.77961 4.81206 4.82980 4.91655 4.93639 5.00907 5.07591 5.13546 5.18449 5.35177 5.46302 5.49567 5.57076 5.75932 6.26263 6.32086 7.02815 7.36414 8.06861 8.32788 9.29225 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018097 B = 0.005472 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.855406 B = 5115.647587 C = 5883.301374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C 0.529 3.471 4 O -0.574 6.574 5 N -0.601 5.601 6 C 0.111 3.889 7 C -0.122 4.122 8 C -0.130 4.130 9 C 0.164 3.836 10 H 0.037 0.963 11 N -0.728 5.728 12 C -0.235 4.235 13 H 0.070 0.930 14 C -0.066 4.066 15 N -0.963 5.963 16 Si 0.963 3.037 17 H -0.271 1.271 18 H -0.295 1.295 19 H -0.293 1.293 20 C 0.098 3.902 21 C -0.136 4.136 22 C 0.039 3.961 23 O -0.400 6.400 24 C 0.047 3.953 25 H 0.075 0.925 26 H 0.093 0.907 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.046 0.954 34 H 0.377 0.623 35 H 0.251 0.749 36 H 0.080 0.920 37 H 0.104 0.896 38 H 0.110 0.890 39 H 0.078 0.922 40 H 0.101 0.899 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.319 -0.986 -15.663 15.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 C 0.318 3.682 4 O -0.454 6.454 5 N -0.333 5.333 6 C -0.011 4.011 7 C -0.161 4.161 8 C -0.170 4.170 9 C 0.054 3.946 10 H 0.055 0.945 11 N -0.368 5.368 12 C -0.367 4.367 13 H 0.088 0.912 14 C -0.259 4.259 15 N -0.614 5.614 16 Si 0.793 3.207 17 H -0.196 1.196 18 H -0.222 1.222 19 H -0.220 1.220 20 C -0.025 4.025 21 C -0.174 4.174 22 C -0.037 4.037 23 O -0.319 6.319 24 C -0.030 4.030 25 H 0.094 0.906 26 H 0.111 0.889 27 H 0.088 0.912 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.113 0.887 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.210 0.790 35 H 0.060 0.940 36 H 0.098 0.902 37 H 0.122 0.878 38 H 0.129 0.871 39 H 0.096 0.904 40 H 0.119 0.881 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.980 -0.846 -15.931 16.229 hybrid contribution -0.163 -0.065 1.251 1.263 sum 2.816 -0.911 -14.679 14.975 Atomic orbital electron populations 1.22108 0.89265 1.04926 1.03779 1.22175 0.99502 0.91839 0.98286 1.20640 0.78397 0.87596 0.81570 1.90602 1.43612 1.76095 1.35082 1.48061 1.50203 1.16698 1.18317 1.21720 0.97844 0.82974 0.98562 1.21850 0.97804 1.02817 0.93585 1.22115 0.99146 0.98251 0.97537 1.20663 0.92919 0.94534 0.86444 0.94486 1.42385 1.05546 1.79157 1.09728 1.19499 0.91940 1.34673 0.90544 0.91237 1.25385 0.95853 1.03497 1.01122 1.69783 1.03470 1.56609 1.31527 0.85232 0.77937 0.77175 0.80377 1.19588 1.22205 1.22039 1.22347 0.93503 1.01976 0.84646 1.23095 1.01409 0.96630 0.96257 1.23730 1.00532 0.96609 0.82826 1.89144 1.35931 1.74092 1.32735 1.23907 0.88545 0.95373 0.95189 0.90595 0.88868 0.91221 0.89675 0.89886 0.88720 0.92857 0.92157 0.93485 0.79006 0.93986 0.90199 0.87839 0.87119 0.90366 0.88065 0.89900 0.89633 0.89431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 7.96 71.98 0.57 -2.18 16 2 C -0.11 -2.81 0.69 -51.91 -0.04 -2.84 16 3 C 0.53 15.91 6.51 87.66 0.57 16.48 16 4 O -0.57 -20.21 14.76 -3.05 -0.05 -20.26 16 5 N -0.60 -17.19 2.90 -818.90 -2.37 -19.56 16 6 C 0.11 2.90 6.42 86.36 0.55 3.45 16 7 C -0.12 -3.24 6.08 30.67 0.19 -3.06 16 8 C -0.13 -4.30 5.47 30.62 0.17 -4.14 16 9 C 0.16 5.99 2.68 45.07 0.12 6.11 16 10 H 0.04 1.48 6.98 -2.39 -0.02 1.47 16 11 N -0.73 -33.56 5.12 -322.57 -1.65 -35.22 16 12 C -0.23 -12.35 9.93 84.03 0.83 -11.51 16 13 H 0.07 3.62 7.83 -2.91 -0.02 3.60 16 14 C -0.07 -3.60 5.50 84.86 0.47 -3.13 16 15 N -0.96 -55.88 13.06 21.65 0.28 -55.59 16 16 Si 0.96 44.82 29.55 68.60 2.03 46.85 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 18 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 19 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 20 C 0.10 2.92 3.57 86.37 0.31 3.23 16 21 C -0.14 -2.91 6.33 31.72 0.20 -2.71 16 22 C 0.04 0.83 7.64 72.60 0.55 1.38 16 23 O -0.40 -12.00 11.65 -148.98 -1.74 -13.74 16 24 C 0.05 1.29 5.37 72.48 0.39 1.68 16 25 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.09 1.42 8.00 -2.38 -0.02 1.40 16 27 H 0.07 1.44 5.29 -2.39 -0.01 1.42 16 28 H 0.08 2.31 7.03 -2.39 -0.02 2.29 16 29 H 0.08 1.90 8.14 -2.39 -0.02 1.89 16 30 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 33 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.38 18.38 7.80 -92.71 -0.72 17.66 16 35 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 36 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.10 2.94 3.23 -2.39 -0.01 2.93 16 38 H 0.11 1.70 7.73 -2.39 -0.02 1.68 16 39 H 0.08 2.01 6.54 -2.39 -0.02 1.99 16 40 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.09 2.76 4.46 -2.39 -0.01 2.75 16 43 H 0.09 2.16 7.77 -2.38 -0.02 2.14 16 Total: -1.00 -65.22 326.76 1.69 -63.53 By element: Atomic # 1 Polarization: 30.94 SS G_CDS: 0.29 Total: 31.23 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: 4.89 Total: 2.76 kcal Atomic # 7 Polarization: -106.63 SS G_CDS: -3.74 Total: -110.37 kcal Atomic # 8 Polarization: -32.22 SS G_CDS: -1.78 Total: -34.00 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -65.22 1.69 -63.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000566083.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.479 kcal (2) G-P(sol) polarization free energy of solvation -65.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds