Wall clock time and date at job start Tue Mar 31 2020 05:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50692 * 109.52147 * 2 1 4 4 O 1.21283 * 120.00298 * 236.15466 * 3 2 1 5 5 N 1.34782 * 120.00285 * 56.15287 * 3 2 1 6 6 C 1.47025 * 125.64494 * 354.17184 * 5 3 2 7 7 C 1.54320 * 107.39925 * 178.82292 * 6 5 3 8 8 C 1.55404 * 102.83253 * 337.97567 * 7 6 5 9 9 H 1.09003 * 110.88761 * 277.26972 * 8 7 6 10 10 N 1.46493 * 111.07365 * 153.48533 * 8 7 6 11 11 C 1.36941 * 119.99985 * 92.66208 * 10 8 7 12 12 H 1.07993 * 119.99822 * 0.02562 * 11 10 8 13 13 C 1.38808 * 120.00043 * 180.02562 * 11 10 8 14 14 N 1.31618 * 119.99940 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00089 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47080 * 89.99712 * 15 13 11 17 17 H 1.48497 * 109.47156 * 209.99595 * 15 13 11 18 18 H 1.48502 * 109.47083 * 329.99863 * 15 13 11 19 19 C 1.47415 * 125.64937 * 174.12354 * 5 3 2 20 20 C 1.53175 * 109.52159 * 239.87339 * 2 1 3 21 21 C 1.53178 * 109.03651 * 183.05064 * 20 2 1 22 22 C 1.53090 * 109.16037 * 56.98109 * 21 20 2 23 23 O 1.42906 * 109.41787 * 302.39324 * 22 21 20 24 24 C 1.42904 * 114.09786 * 61.15641 * 23 22 21 25 25 H 1.09009 * 109.46994 * 46.61176 * 1 2 3 26 26 H 1.09007 * 109.47256 * 166.60721 * 1 2 3 27 27 H 1.08994 * 109.47091 * 286.61024 * 1 2 3 28 28 H 1.09000 * 109.88122 * 298.31656 * 6 5 3 29 29 H 1.08993 * 109.88342 * 59.32561 * 6 5 3 30 30 H 1.09011 * 110.72111 * 96.24805 * 7 6 5 31 31 H 1.08996 * 110.72048 * 219.51737 * 7 6 5 32 32 H 0.96999 * 120.00265 * 272.66704 * 10 8 7 33 33 H 0.97010 * 119.99804 * 179.97438 * 14 13 11 34 34 H 1.09005 * 110.37304 * 323.00379 * 19 5 3 35 35 H 1.08998 * 110.36917 * 85.22187 * 19 5 3 36 36 H 1.09000 * 109.54784 * 302.91614 * 20 2 1 37 37 H 1.09000 * 109.54768 * 63.18584 * 20 2 1 38 38 H 1.08994 * 109.52348 * 176.88441 * 21 20 2 39 39 H 1.09002 * 109.52408 * 297.01437 * 21 20 2 40 40 H 1.09000 * 109.48134 * 62.37666 * 22 21 20 41 41 H 1.09000 * 109.48324 * 182.41009 * 22 21 20 42 42 H 1.08998 * 109.48000 * 178.86251 * 24 23 22 43 43 H 1.08994 * 109.47678 * 58.82703 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0336 1.4203 0.0000 4 8 2.7876 1.7964 -0.8723 5 7 1.6461 2.2728 0.9694 6 6 0.6488 1.9888 2.0117 7 6 0.5529 3.2389 2.9114 8 6 1.9116 3.9501 2.6601 9 1 2.6974 3.5166 3.2787 10 7 1.8015 5.3926 2.8904 11 6 2.0968 5.9139 4.1217 12 1 2.4112 5.2617 4.9230 13 6 1.9921 7.2807 4.3401 14 7 1.6094 8.0757 3.3634 15 14 2.3955 7.9920 6.0196 16 1 3.8369 8.3450 6.0744 17 1 1.5784 9.2102 6.2506 18 1 2.0921 6.9860 7.0690 19 6 2.1527 3.6438 1.1608 20 6 2.0419 -0.7246 -1.2487 21 6 3.5717 -0.7851 -1.1994 22 6 4.0057 -1.4794 0.0942 23 8 3.4707 -0.7728 1.2152 24 6 2.0428 -0.7247 1.2472 25 1 -0.3633 0.7060 -0.7469 26 1 -0.3634 -0.9998 -0.2380 27 1 -0.3633 0.2938 0.9847 28 1 -0.3193 1.7868 1.5533 29 1 0.9651 1.1297 2.6032 30 1 -0.2774 3.8740 2.6021 31 1 0.4521 2.9536 3.9586 32 1 1.5195 5.9785 2.1706 33 1 1.5358 9.0309 3.5161 34 1 3.2171 3.6907 0.9305 35 1 1.5988 4.3437 0.5352 36 1 1.6377 -1.7366 -1.2745 37 1 1.7270 -0.1820 -2.1400 38 1 3.9418 -1.3475 -2.0565 39 1 3.9773 0.2263 -1.2247 40 1 3.6338 -2.5040 0.0992 41 1 5.0939 -1.4872 0.1551 42 1 1.7171 -0.1887 2.1387 43 1 1.6453 -1.7393 1.2673 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019572786.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:56 Heat of formation + Delta-G solvation = -62.446396 kcal Electronic energy + Delta-G solvation = -23564.821074 eV Core-core repulsion = 20224.445986 eV Total energy + Delta-G solvation = -3340.375089 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.94774 -38.60451 -37.12992 -34.72940 -34.10817 -32.42626 -31.19258 -29.57027 -27.81493 -27.12641 -25.25075 -24.42457 -23.29264 -22.05335 -21.17785 -20.06837 -18.73611 -17.36337 -16.91929 -16.35862 -15.99837 -15.78878 -15.07236 -14.86584 -14.56103 -14.25372 -13.89234 -13.79636 -13.30006 -13.03250 -12.77076 -12.75660 -12.58886 -12.32912 -12.24106 -11.95719 -11.69256 -11.50776 -11.17984 -11.10844 -10.86901 -10.72662 -10.59963 -10.56068 -10.24367 -10.05759 -9.76864 -9.71767 -9.26038 -8.96067 -8.33215 -7.05115 -5.82635 -3.13161 2.78176 3.16517 3.41353 3.46796 3.48132 3.75126 4.29428 4.43888 4.54759 4.62789 4.79363 4.91865 5.01964 5.03615 5.14374 5.18319 5.23134 5.32419 5.36190 5.41343 5.50099 5.58524 5.63039 5.65950 5.72668 5.78352 5.80317 5.92803 5.98129 6.04187 6.16050 6.26784 6.36896 6.39806 6.57857 6.64063 6.90844 7.03840 7.65531 7.79176 8.34379 8.37934 9.46470 10.00570 10.35516 11.39587 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031876 B = 0.003807 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.188113 B = 7353.613362 C = 7425.558050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C 0.546 3.454 4 O -0.540 6.540 5 N -0.609 5.609 6 C 0.091 3.909 7 C -0.157 4.157 8 C 0.173 3.827 9 H 0.067 0.933 10 N -0.714 5.714 11 C -0.245 4.245 12 H 0.073 0.927 13 C -0.010 4.010 14 N -0.931 5.931 15 Si 0.909 3.091 16 H -0.289 1.289 17 H -0.291 1.291 18 H -0.281 1.281 19 C 0.099 3.901 20 C -0.093 4.093 21 C -0.169 4.169 22 C 0.060 3.940 23 O -0.375 6.375 24 C 0.068 3.932 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.386 0.614 33 H 0.257 0.743 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.101 0.899 40 H 0.046 0.954 41 H 0.092 0.908 42 H 0.104 0.896 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.619 -21.114 -6.613 22.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.117 4.117 3 C 0.335 3.665 4 O -0.418 6.418 5 N -0.342 5.342 6 C -0.032 4.032 7 C -0.198 4.198 8 C 0.060 3.940 9 H 0.085 0.915 10 N -0.353 5.353 11 C -0.376 4.376 12 H 0.091 0.909 13 C -0.206 4.206 14 N -0.578 5.578 15 Si 0.740 3.260 16 H -0.216 1.216 17 H -0.217 1.217 18 H -0.207 1.207 19 C -0.024 4.024 20 C -0.131 4.131 21 C -0.207 4.207 22 C -0.017 4.017 23 O -0.293 6.293 24 C -0.009 4.009 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.220 0.780 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.119 0.881 40 H 0.064 0.936 41 H 0.110 0.890 42 H 0.121 0.879 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.018 -20.795 -6.813 21.976 hybrid contribution -0.219 0.504 0.438 0.703 sum -2.237 -20.291 -6.375 21.386 Atomic orbital electron populations 1.22065 0.92166 1.02937 1.03720 1.21440 0.97634 0.93662 0.98933 1.19795 0.80436 0.85970 0.80340 1.90602 1.36762 1.77866 1.36521 1.48347 1.41595 1.15137 1.29128 1.22483 0.91583 0.99456 0.89653 1.23484 1.02386 0.95221 0.98712 1.21336 0.94140 0.86810 0.91685 0.91519 1.42264 1.80473 1.00114 1.12497 1.19235 1.38491 0.91015 0.88846 0.90947 1.24766 1.01943 0.96099 0.97793 1.69667 1.53229 1.03701 1.31212 0.86170 0.77823 0.78557 0.83495 1.21606 1.21738 1.20663 1.22573 0.99756 0.81546 0.98522 1.21418 0.96023 0.99255 0.96403 1.22432 0.96187 1.04427 0.97623 1.22622 0.99092 0.94033 0.85959 1.88010 1.19503 1.76477 1.45332 1.22796 0.81838 0.99430 0.96841 0.91700 0.91455 0.90551 0.91334 0.91739 0.90606 0.90678 0.77958 0.93359 0.90737 0.91560 0.91538 0.90836 0.91252 0.88086 0.93576 0.88996 0.87865 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 7.77 37.16 0.29 -1.06 16 2 C -0.11 -1.29 0.50 -155.52 -0.08 -1.37 16 3 C 0.55 8.57 6.01 -10.99 -0.07 8.50 16 4 O -0.54 -10.22 14.02 5.56 0.08 -10.14 16 5 N -0.61 -9.51 3.32 -170.53 -0.57 -10.08 16 6 C 0.09 1.18 5.05 -3.06 -0.02 1.16 16 7 C -0.16 -2.50 6.67 -24.76 -0.17 -2.67 16 8 C 0.17 3.35 3.71 -65.65 -0.24 3.11 16 9 H 0.07 1.34 8.09 -51.93 -0.42 0.92 16 10 N -0.71 -17.43 5.25 -51.22 -0.27 -17.70 16 11 C -0.24 -6.62 9.96 -15.06 -0.15 -6.77 16 12 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 13 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 14 N -0.93 -27.66 13.06 55.49 0.72 -26.93 16 15 Si 0.91 21.99 29.55 -169.99 -5.02 16.96 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 17 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 C 0.10 1.81 6.53 -2.53 -0.02 1.80 16 20 C -0.09 -0.99 4.43 -26.55 -0.12 -1.11 16 21 C -0.17 -1.92 5.81 -26.59 -0.15 -2.08 16 22 C 0.06 0.63 6.84 37.20 0.25 0.89 16 23 O -0.37 -4.99 10.45 -35.23 -0.37 -5.36 16 24 C 0.07 0.73 5.40 37.20 0.20 0.94 16 25 H 0.06 0.63 8.07 -51.92 -0.42 0.21 16 26 H 0.07 0.46 8.06 -51.92 -0.42 0.04 16 27 H 0.08 0.62 4.93 -51.93 -0.26 0.36 16 28 H 0.07 0.75 5.87 -51.93 -0.30 0.45 16 29 H 0.06 0.72 5.43 -51.93 -0.28 0.44 16 30 H 0.08 1.29 8.14 -51.92 -0.42 0.87 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.39 10.07 7.76 -40.82 -0.32 9.75 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.07 1.45 8.10 -51.93 -0.42 1.03 16 35 H 0.07 1.25 8.01 -51.93 -0.42 0.84 16 36 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 37 H 0.07 0.84 8.07 -51.93 -0.42 0.42 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.10 1.51 5.68 -51.93 -0.30 1.21 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.10 1.09 5.04 -51.93 -0.26 0.83 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 327.39 15.07 4.93 4.93 Total: -1.00 -31.73 327.39 -7.58 -39.31 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -6.73 Total: 8.03 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -0.36 Total: 0.97 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -0.11 Total: -54.71 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.29 Total: -15.49 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.73 -7.58 -39.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019572786.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.135 kcal (2) G-P(sol) polarization free energy of solvation -31.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds