Wall clock time and date at job start Tue Mar 31 2020 05:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50692 * 109.52147 * 2 1 4 4 O 1.21283 * 120.00298 * 236.15466 * 3 2 1 5 5 N 1.34782 * 120.00285 * 56.15287 * 3 2 1 6 6 C 1.47025 * 125.64494 * 354.17184 * 5 3 2 7 7 C 1.54320 * 107.39925 * 178.82292 * 6 5 3 8 8 C 1.55404 * 102.83253 * 337.97567 * 7 6 5 9 9 H 1.09003 * 110.88761 * 277.26972 * 8 7 6 10 10 N 1.46493 * 111.07365 * 153.48533 * 8 7 6 11 11 C 1.36941 * 119.99985 * 92.66208 * 10 8 7 12 12 H 1.07993 * 119.99822 * 0.02562 * 11 10 8 13 13 C 1.38808 * 120.00043 * 180.02562 * 11 10 8 14 14 N 1.31618 * 119.99940 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00089 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47080 * 89.99712 * 15 13 11 17 17 H 1.48497 * 109.47156 * 209.99595 * 15 13 11 18 18 H 1.48502 * 109.47083 * 329.99863 * 15 13 11 19 19 C 1.47415 * 125.64937 * 174.12354 * 5 3 2 20 20 C 1.53175 * 109.52159 * 239.87339 * 2 1 3 21 21 C 1.53178 * 109.03651 * 183.05064 * 20 2 1 22 22 C 1.53090 * 109.16037 * 56.98109 * 21 20 2 23 23 O 1.42906 * 109.41787 * 302.39324 * 22 21 20 24 24 C 1.42904 * 114.09786 * 61.15641 * 23 22 21 25 25 H 1.09009 * 109.46994 * 46.61176 * 1 2 3 26 26 H 1.09007 * 109.47256 * 166.60721 * 1 2 3 27 27 H 1.08994 * 109.47091 * 286.61024 * 1 2 3 28 28 H 1.09000 * 109.88122 * 298.31656 * 6 5 3 29 29 H 1.08993 * 109.88342 * 59.32561 * 6 5 3 30 30 H 1.09011 * 110.72111 * 96.24805 * 7 6 5 31 31 H 1.08996 * 110.72048 * 219.51737 * 7 6 5 32 32 H 0.96999 * 120.00265 * 272.66704 * 10 8 7 33 33 H 0.97010 * 119.99804 * 179.97438 * 14 13 11 34 34 H 1.09005 * 110.37304 * 323.00379 * 19 5 3 35 35 H 1.08998 * 110.36917 * 85.22187 * 19 5 3 36 36 H 1.09000 * 109.54784 * 302.91614 * 20 2 1 37 37 H 1.09000 * 109.54768 * 63.18584 * 20 2 1 38 38 H 1.08994 * 109.52348 * 176.88441 * 21 20 2 39 39 H 1.09002 * 109.52408 * 297.01437 * 21 20 2 40 40 H 1.09000 * 109.48134 * 62.37666 * 22 21 20 41 41 H 1.09000 * 109.48324 * 182.41009 * 22 21 20 42 42 H 1.08998 * 109.48000 * 178.86251 * 24 23 22 43 43 H 1.08994 * 109.47678 * 58.82703 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0336 1.4203 0.0000 4 8 2.7876 1.7964 -0.8723 5 7 1.6461 2.2728 0.9694 6 6 0.6488 1.9888 2.0117 7 6 0.5529 3.2389 2.9114 8 6 1.9116 3.9501 2.6601 9 1 2.6974 3.5166 3.2787 10 7 1.8015 5.3926 2.8904 11 6 2.0968 5.9139 4.1217 12 1 2.4112 5.2617 4.9230 13 6 1.9921 7.2807 4.3401 14 7 1.6094 8.0757 3.3634 15 14 2.3955 7.9920 6.0196 16 1 3.8369 8.3450 6.0744 17 1 1.5784 9.2102 6.2506 18 1 2.0921 6.9860 7.0690 19 6 2.1527 3.6438 1.1608 20 6 2.0419 -0.7246 -1.2487 21 6 3.5717 -0.7851 -1.1994 22 6 4.0057 -1.4794 0.0942 23 8 3.4707 -0.7728 1.2152 24 6 2.0428 -0.7247 1.2472 25 1 -0.3633 0.7060 -0.7469 26 1 -0.3634 -0.9998 -0.2380 27 1 -0.3633 0.2938 0.9847 28 1 -0.3193 1.7868 1.5533 29 1 0.9651 1.1297 2.6032 30 1 -0.2774 3.8740 2.6021 31 1 0.4521 2.9536 3.9586 32 1 1.5195 5.9785 2.1706 33 1 1.5358 9.0309 3.5161 34 1 3.2171 3.6907 0.9305 35 1 1.5988 4.3437 0.5352 36 1 1.6377 -1.7366 -1.2745 37 1 1.7270 -0.1820 -2.1400 38 1 3.9418 -1.3475 -2.0565 39 1 3.9773 0.2263 -1.2247 40 1 3.6338 -2.5040 0.0992 41 1 5.0939 -1.4872 0.1551 42 1 1.7171 -0.1887 2.1387 43 1 1.6453 -1.7393 1.2673 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019572786.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:56 Heat of formation + Delta-G solvation = -84.754040 kcal Electronic energy + Delta-G solvation = -23565.788406 eV Core-core repulsion = 20224.445986 eV Total energy + Delta-G solvation = -3341.342421 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.00640 -39.74795 -38.45144 -36.09013 -35.45861 -33.64432 -32.70241 -31.02341 -29.33922 -27.89966 -26.13097 -25.93505 -24.88795 -23.02817 -22.24448 -21.60696 -19.86778 -19.33575 -17.99754 -17.42164 -17.24327 -16.78474 -16.40298 -16.08911 -15.86382 -15.54230 -15.15217 -15.00225 -14.71720 -14.47431 -14.09006 -13.80004 -13.62132 -13.35061 -13.26245 -13.05840 -12.94691 -12.88826 -12.74003 -12.54145 -12.36036 -12.10104 -11.97529 -11.77545 -11.57906 -11.43175 -11.41775 -10.94254 -10.68038 -10.31487 -9.62167 -9.05744 -7.95876 -5.26379 1.48983 1.50897 1.58909 1.60577 1.94535 2.56908 2.94778 3.31850 3.40379 3.58197 3.69936 3.80016 3.86853 3.95806 4.05181 4.13771 4.20723 4.24262 4.27648 4.46182 4.50751 4.52202 4.56700 4.70147 4.72793 4.76033 4.83422 4.89191 4.94163 5.00050 5.03613 5.16957 5.22381 5.25490 5.31655 5.41200 5.47328 5.53084 6.24511 6.24759 6.57923 7.15495 7.31411 8.02323 8.26949 9.27539 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031876 B = 0.003807 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.188113 B = 7353.613362 C = 7425.558050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.107 4.107 3 C 0.535 3.465 4 O -0.583 6.583 5 N -0.611 5.611 6 C 0.097 3.903 7 C -0.145 4.145 8 C 0.167 3.833 9 H 0.061 0.939 10 N -0.728 5.728 11 C -0.243 4.243 12 H 0.081 0.919 13 C -0.073 4.073 14 N -0.970 5.970 15 Si 0.974 3.026 16 H -0.290 1.290 17 H -0.296 1.296 18 H -0.265 1.265 19 C 0.108 3.892 20 C -0.094 4.094 21 C -0.170 4.170 22 C 0.058 3.942 23 O -0.407 6.407 24 C 0.064 3.936 25 H 0.052 0.948 26 H 0.098 0.902 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.374 0.626 33 H 0.251 0.749 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.103 0.897 37 H 0.058 0.942 38 H 0.087 0.913 39 H 0.056 0.944 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.105 0.895 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.969 -24.524 -5.546 25.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.110 4.110 3 C 0.326 3.674 4 O -0.463 6.463 5 N -0.344 5.344 6 C -0.025 4.025 7 C -0.186 4.186 8 C 0.056 3.944 9 H 0.079 0.921 10 N -0.368 5.368 11 C -0.374 4.374 12 H 0.099 0.901 13 C -0.265 4.265 14 N -0.620 5.620 15 Si 0.803 3.197 16 H -0.217 1.217 17 H -0.223 1.223 18 H -0.189 1.189 19 C -0.016 4.016 20 C -0.131 4.131 21 C -0.208 4.208 22 C -0.018 4.018 23 O -0.326 6.326 24 C -0.012 4.012 25 H 0.071 0.929 26 H 0.117 0.883 27 H 0.106 0.894 28 H 0.117 0.883 29 H 0.111 0.889 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.206 0.794 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.122 0.878 37 H 0.076 0.924 38 H 0.106 0.894 39 H 0.075 0.925 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.122 0.878 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.382 -24.283 -5.729 25.178 hybrid contribution 0.267 1.499 0.027 1.522 sum -3.116 -22.784 -5.702 23.693 Atomic orbital electron populations 1.22091 0.89764 1.04655 1.04061 1.21521 0.99395 0.90110 0.99978 1.20838 0.79624 0.87656 0.79287 1.90594 1.38584 1.78954 1.38153 1.48446 1.42062 1.13833 1.30034 1.22650 0.92401 0.98624 0.88817 1.23276 0.99073 0.95905 1.00312 1.21472 0.96165 0.84579 0.92145 0.92102 1.42410 1.80776 1.02083 1.11485 1.19632 1.36691 0.91313 0.89767 0.90123 1.25577 1.02948 0.96657 1.01305 1.69829 1.55396 1.03531 1.33275 0.85130 0.77064 0.77712 0.79779 1.21750 1.22279 1.18933 1.22214 0.98314 0.83523 0.97583 1.21485 0.95360 1.00871 0.95397 1.22380 0.97001 1.02262 0.99115 1.22744 0.99320 0.95108 0.84658 1.87967 1.21117 1.77237 1.46298 1.22990 0.80805 1.01291 0.96116 0.92905 0.88289 0.89442 0.88345 0.88870 0.91681 0.89376 0.79427 0.93980 0.93091 0.92886 0.87846 0.92357 0.89439 0.92519 0.90443 0.89064 0.87754 0.88527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 7.77 71.98 0.56 -1.48 16 2 C -0.11 -2.14 0.50 -52.84 -0.03 -2.17 16 3 C 0.54 16.59 6.01 87.65 0.53 17.12 16 4 O -0.58 -22.97 14.02 -3.04 -0.04 -23.01 16 5 N -0.61 -18.76 3.32 -811.81 -2.69 -21.45 16 6 C 0.10 2.24 5.05 86.73 0.44 2.67 16 7 C -0.15 -4.41 6.67 31.87 0.21 -4.20 16 8 C 0.17 6.54 3.71 46.47 0.17 6.72 16 9 H 0.06 2.45 8.09 -2.39 -0.02 2.44 16 10 N -0.73 -36.47 5.25 -315.97 -1.66 -38.13 16 11 C -0.24 -13.21 9.96 84.03 0.84 -12.38 16 12 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 13 C -0.07 -4.11 5.50 84.86 0.47 -3.65 16 14 N -0.97 -59.22 13.06 21.65 0.28 -58.94 16 15 Si 0.97 45.55 29.55 68.60 2.03 47.58 16 16 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 17 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 18 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 19 C 0.11 4.11 6.53 86.86 0.57 4.67 16 20 C -0.09 -1.76 4.43 30.71 0.14 -1.62 16 21 C -0.17 -3.67 5.81 30.68 0.18 -3.49 16 22 C 0.06 1.10 6.84 72.01 0.49 1.60 16 23 O -0.41 -9.96 10.45 -148.98 -1.56 -11.52 16 24 C 0.06 1.15 5.40 72.01 0.39 1.54 16 25 H 0.05 0.88 8.07 -2.38 -0.02 0.86 16 26 H 0.10 0.79 8.06 -2.38 -0.02 0.77 16 27 H 0.09 0.99 4.93 -2.39 -0.01 0.98 16 28 H 0.10 1.77 5.87 -2.39 -0.01 1.76 16 29 H 0.09 1.70 5.43 -2.39 -0.01 1.69 16 30 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 31 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.37 20.33 7.76 -92.71 -0.72 19.61 16 33 H 0.25 14.91 8.31 -92.70 -0.77 14.14 16 34 H 0.05 2.13 8.10 -2.38 -0.02 2.11 16 35 H 0.05 2.13 8.01 -2.39 -0.02 2.11 16 36 H 0.10 1.20 8.12 -2.39 -0.02 1.18 16 37 H 0.06 1.27 8.07 -2.39 -0.02 1.25 16 38 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.06 1.76 5.68 -2.39 -0.01 1.74 16 40 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.10 1.78 5.04 -2.39 -0.01 1.76 16 43 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -72.37 327.39 1.60 -70.77 By element: Atomic # 1 Polarization: 29.08 SS G_CDS: 0.29 Total: 29.38 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: 4.95 Total: 5.33 kcal Atomic # 7 Polarization: -114.46 SS G_CDS: -4.07 Total: -118.53 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -1.60 Total: -34.53 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -72.37 1.60 -70.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019572786.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.983 kcal (2) G-P(sol) polarization free energy of solvation -72.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds