Wall clock time and date at job start Tue Mar 31 2020 05:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50703 * 109.54061 * 2 1 4 4 O 1.21278 * 119.99410 * 239.81637 * 3 2 1 5 5 N 1.34776 * 120.00409 * 59.81795 * 3 2 1 6 6 C 1.46499 * 119.99911 * 180.02562 * 5 3 2 7 7 H 1.09000 * 112.85143 * 336.19582 * 6 5 3 8 8 C 1.53777 * 113.69214 * 107.46370 * 6 5 3 9 9 C 1.53774 * 87.08381 * 139.99061 * 8 6 5 10 10 H 1.08997 * 113.69521 * 220.00978 * 9 8 6 11 11 N 1.46505 * 113.61385 * 89.11575 * 9 8 6 12 12 C 1.36931 * 119.99788 * 107.50497 * 11 9 8 13 13 H 1.08002 * 120.00438 * 0.02562 * 12 11 9 14 14 C 1.38817 * 119.99680 * 179.72358 * 12 11 9 15 15 N 1.31614 * 119.99888 * 0.27479 * 14 12 11 16 16 Si 1.86803 * 119.99862 * 180.27671 * 14 12 11 17 17 H 1.48498 * 109.47174 * 90.00121 * 16 14 12 18 18 H 1.48501 * 109.47062 * 210.00072 * 16 14 12 19 19 H 1.48504 * 109.46913 * 329.99871 * 16 14 12 20 20 C 1.53783 * 113.61385 * 205.00120 * 6 5 3 21 21 C 1.53181 * 109.61163 * 120.21544 * 2 1 3 22 22 C 1.53090 * 109.16155 * 176.89391 * 21 2 1 23 23 O 1.42904 * 109.41325 * 302.39252 * 22 21 2 24 24 C 1.42905 * 114.09954 * 61.16171 * 23 22 21 25 25 C 1.53089 * 109.40814 * 298.83800 * 24 23 22 26 26 H 1.09003 * 109.46908 * 60.00658 * 1 2 3 27 27 H 1.08994 * 109.46956 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47469 * 300.00970 * 1 2 3 29 29 H 0.96996 * 120.00079 * 0.02562 * 5 3 2 30 30 H 1.09001 * 113.61290 * 25.44320 * 8 6 5 31 31 H 1.09000 * 113.61684 * 254.54343 * 8 6 5 32 32 H 0.97000 * 119.99792 * 287.50291 * 11 9 8 33 33 H 0.97005 * 119.99715 * 179.97438 * 15 14 12 34 34 H 1.08995 * 113.61832 * 105.38349 * 20 6 5 35 35 H 1.09003 * 113.61236 * 334.48267 * 20 6 5 36 36 H 1.08999 * 109.52367 * 296.79982 * 21 2 1 37 37 H 1.08997 * 109.52555 * 56.99016 * 21 2 1 38 38 H 1.08999 * 109.47951 * 182.41175 * 22 21 2 39 39 H 1.08996 * 109.48235 * 62.37362 * 22 21 2 40 40 H 1.08997 * 109.47742 * 178.85931 * 24 23 22 41 41 H 1.08997 * 109.48708 * 58.82258 * 24 23 22 42 42 H 1.08997 * 109.52748 * 297.70366 * 25 24 23 43 43 H 1.09007 * 109.51939 * 177.51025 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0341 1.4202 0.0000 4 8 2.7346 1.8150 -0.9080 5 7 1.7065 2.2516 1.0089 6 6 2.1961 3.6324 1.0085 7 1 3.1032 3.7597 0.4176 8 6 1.1079 4.6738 0.6986 9 6 1.7533 5.5548 1.7813 10 1 1.0312 6.0806 2.4059 11 7 2.8097 6.4323 1.2710 12 6 2.5875 7.7790 1.1613 13 1 1.6337 8.1944 1.4513 14 6 3.5905 8.6111 0.6832 15 7 4.7531 8.1050 0.3304 16 14 3.2901 10.4494 0.5408 17 1 3.6845 11.1150 1.8083 18 1 4.0977 10.9976 -0.5783 19 1 1.8494 10.6966 0.2792 20 6 2.2825 4.2558 2.4117 21 6 2.0442 -0.7262 1.2469 22 6 3.5730 -0.7882 1.1977 23 8 3.9833 -1.4477 -0.0019 24 6 3.5715 -0.7877 -1.2006 25 6 2.0425 -0.7258 -1.2477 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5140 0.8899 29 1 1.1466 1.9358 1.7353 30 1 0.1008 4.3409 0.9498 31 1 1.1781 5.0934 -0.3049 32 1 3.6665 6.0592 1.0110 33 1 5.4538 8.6865 -0.0040 34 1 3.3010 4.3379 2.7911 35 1 1.5965 3.8085 3.1311 36 1 1.7301 -0.1847 2.1392 37 1 1.6393 -1.7378 1.2722 38 1 3.9423 -1.3414 2.0612 39 1 3.9786 0.2234 1.2133 40 1 3.9396 -1.3407 -2.0648 41 1 3.9769 0.2239 -1.2165 42 1 1.6375 -1.7374 -1.2728 43 1 1.7273 -0.1839 -2.1394 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020750892.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:26 Heat of formation + Delta-G solvation = -60.379253 kcal Electronic energy + Delta-G solvation = -23104.566607 eV Core-core repulsion = 19764.281157 eV Total energy + Delta-G solvation = -3340.285451 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.95805 -38.91061 -37.58442 -35.01281 -34.03800 -32.60862 -31.14845 -29.70669 -28.60975 -25.13413 -24.95691 -23.80957 -23.67796 -22.79756 -21.62307 -19.66556 -18.55015 -17.38884 -16.78593 -16.25938 -16.10463 -15.83633 -15.16046 -14.90189 -14.61907 -14.46903 -14.21448 -13.88050 -13.17355 -12.86767 -12.79037 -12.64558 -12.38322 -12.30077 -12.20363 -12.04491 -11.96261 -11.63090 -11.45006 -10.89434 -10.81060 -10.73137 -10.57984 -10.28115 -10.16130 -9.91749 -9.73181 -9.68458 -9.27434 -8.92658 -8.70051 -7.02165 -5.80468 -3.10656 2.68984 3.27211 3.42130 3.47153 3.49314 3.79528 4.28757 4.40334 4.53934 4.55059 4.81382 4.85200 5.06583 5.08501 5.21536 5.24938 5.31633 5.36821 5.41086 5.42592 5.45660 5.47791 5.59558 5.71098 5.81165 5.82998 5.85705 5.91414 5.96434 6.03667 6.06539 6.22216 6.36087 6.60213 6.70751 6.76716 7.01413 7.10979 7.63842 7.68292 8.34189 8.37649 9.48463 10.04572 10.38547 11.41725 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029883 B = 0.003554 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.754388 B = 7875.894724 C = 8147.285228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.085 4.085 3 C 0.518 3.482 4 O -0.534 6.534 5 N -0.714 5.714 6 C 0.125 3.875 7 H 0.113 0.887 8 C -0.183 4.183 9 C 0.172 3.828 10 H 0.068 0.932 11 N -0.705 5.705 12 C -0.247 4.247 13 H 0.073 0.927 14 C -0.010 4.010 15 N -0.930 5.930 16 Si 0.909 3.091 17 H -0.289 1.289 18 H -0.291 1.291 19 H -0.281 1.281 20 C -0.164 4.164 21 C -0.141 4.141 22 C 0.057 3.943 23 O -0.385 6.385 24 C 0.047 3.953 25 C -0.127 4.127 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.394 0.606 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.386 0.614 33 H 0.257 0.743 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.052 0.948 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.670 -20.408 2.864 22.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.088 4.088 3 C 0.304 3.696 4 O -0.410 6.410 5 N -0.364 5.364 6 C 0.021 3.979 7 H 0.130 0.870 8 C -0.226 4.226 9 C 0.059 3.941 10 H 0.086 0.914 11 N -0.344 5.344 12 C -0.378 4.378 13 H 0.091 0.909 14 C -0.207 4.207 15 N -0.578 5.578 16 Si 0.740 3.260 17 H -0.216 1.216 18 H -0.217 1.217 19 H -0.207 1.207 20 C -0.204 4.204 21 C -0.179 4.179 22 C -0.020 4.020 23 O -0.304 6.304 24 C -0.029 4.029 25 C -0.165 4.165 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.228 0.772 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.220 0.780 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.113 0.887 39 H 0.070 0.930 40 H 0.109 0.891 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.075 -20.059 2.192 21.734 hybrid contribution -0.392 0.953 0.125 1.038 sum -8.467 -19.106 2.318 21.026 Atomic orbital electron populations 1.21825 0.92183 1.02786 1.02762 1.20921 0.97391 0.92747 0.97773 1.20452 0.80126 0.86933 0.82138 1.90678 1.37547 1.77157 1.35652 1.46143 1.52763 1.12731 1.24780 1.22643 0.99012 0.77933 0.98330 0.86951 1.24304 0.97101 0.98183 1.02983 1.20906 0.91618 0.88701 0.92920 0.91408 1.42192 1.12714 1.03872 1.75580 1.19271 0.98516 0.83235 1.36746 0.90932 1.24779 0.96001 0.98234 1.01647 1.69667 1.04264 1.34428 1.49392 0.86168 0.77311 0.85279 0.77276 1.21634 1.21711 1.20673 1.23897 1.02213 0.98856 0.95474 1.22269 0.97453 1.01592 0.96621 1.22568 0.93176 0.98086 0.88138 1.87887 1.77237 1.51400 1.13847 1.22865 0.93578 0.99513 0.86955 1.22019 0.97333 1.00205 0.96993 0.91789 0.91409 0.91973 0.77171 0.91354 0.91090 0.77987 0.93344 0.90886 0.90400 0.90470 0.89935 0.88688 0.93018 0.89139 0.90311 0.90753 0.90109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 8.39 37.16 0.31 -0.79 16 2 C -0.09 -0.86 0.63 -155.47 -0.10 -0.96 16 3 C 0.52 7.15 5.15 -10.98 -0.06 7.09 16 4 O -0.53 -9.67 13.44 5.56 0.07 -9.60 16 5 N -0.71 -9.04 5.13 -53.02 -0.27 -9.32 16 6 C 0.12 2.01 4.11 -67.12 -0.28 1.74 16 7 H 0.11 2.23 7.46 -51.93 -0.39 1.84 16 8 C -0.18 -3.18 7.68 -25.92 -0.20 -3.37 16 9 C 0.17 3.31 4.56 -67.12 -0.31 3.00 16 10 H 0.07 1.28 8.10 -51.93 -0.42 0.86 16 11 N -0.71 -17.57 5.31 -52.64 -0.28 -17.85 16 12 C -0.25 -6.82 9.97 -15.06 -0.15 -6.97 16 13 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 14 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 15 N -0.93 -28.22 13.06 55.49 0.72 -27.49 16 16 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 18 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 C -0.16 -2.54 7.58 -25.92 -0.20 -2.73 16 21 C -0.14 -1.21 4.86 -26.59 -0.13 -1.34 16 22 C 0.06 0.61 6.62 37.20 0.25 0.85 16 23 O -0.38 -4.88 10.77 -35.23 -0.38 -5.26 16 24 C 0.05 0.58 6.55 37.20 0.24 0.82 16 25 C -0.13 -1.35 4.56 -26.60 -0.12 -1.48 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.43 7.56 -51.93 -0.39 0.03 16 29 H 0.39 3.76 7.56 -40.82 -0.31 3.45 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.39 10.32 7.90 -40.82 -0.32 9.99 16 33 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.08 0.95 8.12 -51.93 -0.42 0.53 16 36 H 0.08 0.54 7.52 -51.93 -0.39 0.15 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.05 0.64 7.38 -51.93 -0.38 0.26 16 40 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.08 1.18 5.80 -51.93 -0.30 0.88 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.91 8.03 -51.93 -0.42 0.49 16 LS Contribution 339.58 15.07 5.12 5.12 Total: -1.00 -32.31 339.58 -7.96 -40.27 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -7.10 Total: 11.36 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -0.83 Total: -4.51 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: 0.17 Total: -54.66 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.30 Total: -14.86 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.31 -7.96 -40.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020750892.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.111 kcal (2) G-P(sol) polarization free energy of solvation -32.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds