Wall clock time and date at job start Tue Mar 31 2020 05:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99757 * 2 1 4 4 H 1.48500 * 109.47097 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47355 * 299.99665 * 3 2 1 6 6 H 1.48502 * 109.47250 * 60.00052 * 3 2 1 7 7 C 1.38814 * 120.00415 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00237 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99567 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99676 * 179.97438 * 9 7 2 11 11 H 1.08998 * 112.84871 * 23.80386 * 10 9 7 12 12 C 1.53783 * 113.61531 * 154.99768 * 10 9 7 13 13 C 1.53785 * 87.07882 * 89.19729 * 12 10 9 14 14 H 1.08992 * 113.61574 * 270.79862 * 13 12 10 15 15 N 1.46497 * 113.61121 * 139.98339 * 13 12 10 16 16 C 1.34776 * 120.00266 * 155.00020 * 15 13 12 17 17 O 1.21282 * 119.99745 * 359.97438 * 16 15 13 18 18 C 1.50696 * 120.00262 * 179.97438 * 16 15 13 19 19 C 1.53005 * 109.47066 * 180.02562 * 18 16 15 20 20 H 1.09002 * 109.52314 * 305.00045 * 19 18 16 21 21 C 1.53181 * 109.52320 * 184.87464 * 19 18 16 22 22 C 1.53169 * 109.03929 * 183.05013 * 21 19 18 23 23 C 1.53101 * 109.16257 * 56.97887 * 22 21 19 24 24 O 1.42903 * 109.41341 * 302.39403 * 23 22 21 25 25 C 1.42900 * 114.09799 * 61.16062 * 24 23 22 26 26 C 1.53781 * 113.68915 * 252.53631 * 10 9 7 27 27 H 0.96994 * 120.00036 * 359.97438 * 1 2 3 28 28 H 0.96995 * 119.99828 * 359.97438 * 9 7 2 29 29 H 1.08999 * 113.60982 * 334.65548 * 12 10 9 30 30 H 1.08994 * 113.61846 * 203.74741 * 12 10 9 31 31 H 0.97002 * 120.00483 * 334.99600 * 15 13 12 32 32 H 1.08998 * 109.47271 * 60.00162 * 18 16 15 33 33 H 1.09002 * 109.47177 * 299.99907 * 18 16 15 34 34 H 1.09003 * 109.54262 * 302.92309 * 21 19 18 35 35 H 1.09002 * 109.54034 * 63.09538 * 21 19 18 36 36 H 1.08995 * 109.52819 * 176.88447 * 22 21 19 37 37 H 1.09001 * 109.52398 * 297.07999 * 22 21 19 38 38 H 1.09000 * 109.47517 * 62.37679 * 23 22 21 39 39 H 1.08996 * 109.47896 * 182.40660 * 23 22 21 40 40 H 1.09000 * 109.48323 * 178.85848 * 25 24 23 41 41 H 1.08998 * 109.48675 * 58.81697 * 25 24 23 42 42 H 1.08995 * 113.61470 * 156.32908 * 26 10 9 43 43 H 1.08996 * 113.61487 * 25.41455 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0005 11 1 3.0657 -3.5637 0.4059 12 6 1.2604 -4.8288 0.5961 13 6 0.7223 -5.0805 -0.8224 14 1 -0.1892 -4.5273 -1.0482 15 7 0.6270 -6.5003 -1.1705 16 6 -0.2510 -6.9067 -2.1088 17 8 -0.9625 -6.0969 -2.6647 18 6 -0.3487 -8.3671 -2.4672 19 6 -1.4125 -8.5563 -3.5506 20 1 -2.3563 -8.1281 -3.2131 21 6 -1.5991 -10.0510 -3.8292 22 6 -2.6095 -10.2247 -4.9673 23 6 -2.1153 -9.4613 -6.1989 24 8 -1.9330 -8.0844 -5.8628 25 6 -0.9645 -7.8575 -4.8369 26 6 2.0012 -4.4031 -1.3428 27 1 -0.4850 0.8400 0.0004 28 1 0.3557 -2.3880 0.0005 29 1 0.4931 -4.5188 1.3054 30 1 1.8872 -5.6360 0.9749 31 1 1.1958 -7.1480 -0.7257 32 1 -0.6246 -8.9408 -1.5825 33 1 0.6148 -8.7150 -2.8399 34 1 -0.6444 -10.4899 -4.1190 35 1 -1.9704 -10.5456 -2.9316 36 1 -2.7070 -11.2829 -5.2096 37 1 -3.5775 -9.8301 -4.6584 38 1 -1.1668 -9.8830 -6.5315 39 1 -2.8512 -9.5461 -6.9985 40 1 -0.8713 -6.7868 -4.6553 41 1 -0.0009 -8.2582 -5.1516 42 1 2.8306 -5.0940 -1.4940 43 1 1.8318 -3.7497 -2.1985 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021062417.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:11 Heat of formation + Delta-G solvation = -66.965244 kcal Electronic energy + Delta-G solvation = -22176.323621 eV Core-core repulsion = 18835.752580 eV Total energy + Delta-G solvation = -3340.571041 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.25954 -39.20910 -37.92201 -34.54937 -34.02320 -32.66418 -32.19093 -29.77015 -27.82227 -25.17935 -25.10839 -24.41486 -23.23337 -22.25679 -20.47670 -20.14117 -18.71454 -17.37551 -16.88573 -16.49214 -16.26766 -15.90007 -15.28982 -14.89248 -14.63968 -14.49626 -14.30531 -13.92267 -13.26979 -12.90942 -12.84040 -12.78319 -12.68015 -12.26156 -12.00736 -11.82970 -11.63264 -11.43449 -11.18800 -11.01923 -10.88309 -10.79355 -10.48168 -10.24130 -10.12736 -9.85990 -9.71533 -9.59688 -9.45912 -8.91605 -8.67955 -7.00191 -5.78774 -3.08958 2.74266 3.31891 3.43305 3.48551 3.51239 3.79501 4.46204 4.51125 4.55548 4.56603 4.68796 4.83719 4.96290 5.07187 5.20026 5.20832 5.24836 5.31857 5.33878 5.39839 5.40572 5.48369 5.54890 5.64954 5.73875 5.78754 5.87850 5.99682 6.07993 6.09812 6.14164 6.24795 6.38610 6.62725 6.73271 6.79322 7.03947 7.11435 7.67435 7.70688 8.38675 8.39525 9.50164 10.06492 10.40371 11.43459 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030455 B = 0.002925 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.174955 B = 9569.875734 C =10109.900329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.073 0.927 9 N -0.706 5.706 10 C 0.172 3.828 11 H 0.068 0.932 12 C -0.165 4.165 13 C 0.124 3.876 14 H 0.113 0.887 15 N -0.719 5.719 16 C 0.505 3.495 17 O -0.534 6.534 18 C -0.136 4.136 19 C -0.107 4.107 20 H 0.089 0.911 21 C -0.118 4.118 22 C -0.156 4.156 23 C 0.056 3.944 24 O -0.379 6.379 25 C 0.061 3.939 26 C -0.184 4.184 27 H 0.256 0.744 28 H 0.386 0.614 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.395 0.605 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.047 0.953 39 H 0.090 0.910 40 H 0.115 0.885 41 H 0.042 0.958 42 H 0.068 0.932 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.266 -24.480 -5.919 25.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.208 4.208 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.376 4.376 8 H 0.091 0.909 9 N -0.344 5.344 10 C 0.058 3.942 11 H 0.086 0.914 12 C -0.205 4.205 13 C 0.020 3.980 14 H 0.131 0.869 15 N -0.369 5.369 16 C 0.291 3.709 17 O -0.410 6.410 18 C -0.176 4.176 19 C -0.126 4.126 20 H 0.107 0.893 21 C -0.156 4.156 22 C -0.193 4.193 23 C -0.021 4.021 24 O -0.297 6.297 25 C -0.015 4.015 26 C -0.227 4.227 27 H 0.066 0.934 28 H 0.220 0.780 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.229 0.771 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.108 0.892 40 H 0.133 0.867 41 H 0.060 0.940 42 H 0.087 0.913 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.775 -23.547 -6.395 24.412 hybrid contribution 0.572 0.208 0.382 0.719 sum -0.203 -23.339 -6.012 24.101 Atomic orbital electron populations 1.69676 1.05150 1.25763 1.57119 1.24793 0.95543 0.97860 1.02615 0.86094 0.78760 0.83956 0.77208 1.20493 1.21787 1.21813 1.19310 0.91118 0.83883 1.43291 0.90885 1.42207 1.05783 0.99418 1.87004 1.20906 0.95217 0.85440 0.92600 0.91442 1.23896 1.00738 0.99944 0.95887 1.22638 0.99737 0.79693 0.95883 0.86884 1.46167 1.40119 1.09888 1.40698 1.20672 0.79897 0.90755 0.79593 1.90721 1.43006 1.55499 1.51809 1.21698 1.01227 0.94175 1.00517 1.21554 0.99846 0.95729 0.95498 0.89293 1.21660 0.99436 0.95669 0.98790 1.22181 1.00015 1.00738 0.96396 1.22576 1.00248 0.82823 0.96423 1.88006 1.61387 1.24133 1.56168 1.22887 0.90004 1.02930 0.85710 1.24310 0.96249 0.99749 1.02343 0.93396 0.77967 0.90919 0.90390 0.77116 0.88719 0.89018 0.91814 0.91373 0.91003 0.90922 0.93492 0.89153 0.86728 0.93958 0.91343 0.91064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.38 13.06 55.49 0.72 -27.66 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.47 29.55 -169.99 -5.02 17.44 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 7 C -0.25 -6.81 9.97 -15.06 -0.15 -6.96 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.71 -17.73 5.31 -52.64 -0.28 -18.01 16 10 C 0.17 3.34 4.56 -67.12 -0.31 3.03 16 11 H 0.07 1.28 8.10 -51.93 -0.42 0.86 16 12 C -0.16 -2.57 7.58 -25.92 -0.20 -2.77 16 13 C 0.12 2.03 4.12 -67.11 -0.28 1.75 16 14 H 0.11 2.26 7.46 -51.93 -0.39 1.87 16 15 N -0.72 -8.97 5.35 -53.02 -0.28 -9.26 16 16 C 0.50 6.78 7.56 -10.99 -0.08 6.69 16 17 O -0.53 -9.68 13.58 5.56 0.08 -9.60 16 18 C -0.14 -1.21 5.18 -27.88 -0.14 -1.35 16 19 C -0.11 -1.10 2.03 -90.47 -0.18 -1.28 16 20 H 0.09 1.11 7.96 -51.93 -0.41 0.69 16 21 C -0.12 -0.89 5.31 -26.55 -0.14 -1.04 16 22 C -0.16 -1.19 6.14 -26.59 -0.16 -1.36 16 23 C 0.06 0.51 6.84 37.21 0.25 0.76 16 24 O -0.38 -4.93 10.77 -35.23 -0.38 -5.31 16 25 C 0.06 0.74 5.84 37.21 0.22 0.96 16 26 C -0.18 -3.21 7.68 -25.92 -0.20 -3.41 16 27 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 28 H 0.39 10.40 7.90 -40.82 -0.32 10.08 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.08 0.96 8.12 -51.93 -0.42 0.54 16 31 H 0.40 3.54 8.73 -40.82 -0.36 3.18 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.11 1.73 6.03 -51.93 -0.31 1.42 16 41 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 345.40 15.07 5.21 5.21 Total: -1.00 -33.12 345.40 -8.68 -41.80 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -7.25 Total: 10.79 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -1.47 Total: -5.40 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 0.16 Total: -54.92 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.30 Total: -14.91 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.12 -8.68 -41.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021062417.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.166 kcal (2) G-P(sol) polarization free energy of solvation -33.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds