Wall clock time and date at job start Tue Mar 31 2020 05:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34773 * 120.00390 * 2 1 4 4 O 1.21275 * 120.00300 * 185.46411 * 3 2 1 5 5 C 1.50709 * 119.99597 * 5.46034 * 3 2 1 6 6 C 1.52990 * 110.45955 * 295.76540 * 5 3 2 7 7 C 1.54506 * 110.50935 * 58.52143 * 5 3 2 8 8 C 1.54478 * 104.06643 * 118.64148 * 7 5 3 9 9 O 1.44434 * 104.80041 * 336.02100 * 8 7 5 10 10 C 1.44425 * 105.27282 * 40.51122 * 9 8 7 11 11 C 1.46505 * 119.99637 * 179.97438 * 2 1 3 12 12 H 1.08998 * 110.77473 * 182.73924 * 11 2 1 13 13 C 1.55153 * 110.72327 * 59.50168 * 11 2 1 14 14 C 1.54909 * 101.58185 * 277.13999 * 13 11 2 15 15 N 1.47427 * 104.82897 * 322.98771 * 14 13 11 16 16 C 1.36938 * 125.64460 * 204.16431 * 15 14 13 17 17 H 1.08005 * 119.99634 * 179.97438 * 16 15 14 18 18 C 1.38812 * 120.00321 * 359.96323 * 16 15 14 19 19 N 1.31616 * 119.99934 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00047 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47399 * 89.99571 * 20 18 16 22 22 H 1.48502 * 109.47176 * 210.00003 * 20 18 16 23 23 H 1.48505 * 109.47265 * 329.99432 * 20 18 16 24 24 C 1.47023 * 108.70208 * 24.13155 * 15 14 13 25 25 H 1.08998 * 109.47221 * 214.58984 * 1 2 3 26 26 H 1.08996 * 109.47401 * 334.59596 * 1 2 3 27 27 H 1.09003 * 109.46541 * 94.59137 * 1 2 3 28 28 H 1.09002 * 109.47277 * 60.69958 * 6 5 3 29 29 H 1.08995 * 109.47207 * 180.70143 * 6 5 3 30 30 H 1.09003 * 109.47359 * 300.70466 * 6 5 3 31 31 H 1.09004 * 110.51113 * 237.28670 * 7 5 3 32 32 H 1.09005 * 110.51455 * 359.97438 * 7 5 3 33 33 H 1.08995 * 110.37399 * 217.19143 * 8 7 5 34 34 H 1.09000 * 110.46409 * 94.89892 * 8 7 5 35 35 H 1.09000 * 110.36508 * 200.65775 * 10 9 8 36 36 H 1.08993 * 110.46667 * 78.36641 * 10 9 8 37 37 H 1.08991 * 111.00473 * 159.05980 * 13 11 2 38 38 H 1.09010 * 111.03310 * 35.22268 * 13 11 2 39 39 H 1.08999 * 110.36196 * 204.15044 * 14 13 11 40 40 H 1.09002 * 110.37239 * 81.82540 * 14 13 11 41 41 H 0.97002 * 119.99919 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.87740 * 118.36152 * 24 15 14 43 43 H 1.09005 * 109.87586 * 239.51852 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3476 1.1695 -0.1000 5 6 1.3905 2.4693 0.1242 6 6 0.4802 2.6806 -1.0871 7 6 0.5705 2.4997 1.4333 8 6 1.1587 3.6937 2.2172 9 8 2.4964 3.8539 1.6966 10 6 2.3773 3.6487 0.2720 11 6 2.1975 -1.2688 0.0006 12 1 3.2723 -1.0947 0.0492 13 6 1.8341 -2.1131 -1.2494 14 6 0.5201 -2.7948 -0.7931 15 7 0.7251 -3.0903 0.6367 16 6 0.0811 -4.0655 1.3503 17 1 0.3030 -4.2033 2.3983 18 6 -0.8571 -4.8768 0.7270 19 7 -1.1280 -4.7083 -0.5499 20 14 -1.7361 -6.2066 1.7007 21 1 -2.9783 -5.6478 2.2921 22 1 -2.0812 -7.3345 0.7985 23 1 -0.8475 -6.6948 2.7857 24 6 1.7361 -2.1650 1.1690 25 1 -0.3633 -0.8460 0.5834 26 1 -0.3634 0.9282 0.4408 27 1 -0.3632 -0.0823 -1.0244 28 1 -0.2464 1.8699 -1.1414 29 1 -0.0432 3.6314 -0.9869 30 1 1.0816 2.6909 -1.9962 31 1 -0.4852 2.6663 1.2189 32 1 0.7060 1.5726 1.9905 33 1 1.1908 3.4690 3.2833 34 1 0.5712 4.5941 2.0375 35 1 3.3455 3.3893 -0.1561 36 1 1.9770 4.5409 -0.2094 37 1 2.6061 -2.8534 -1.4587 38 1 1.6624 -1.4747 -2.1163 39 1 0.3573 -3.7166 -1.3515 40 1 -0.3239 -2.1173 -0.9232 41 1 -1.7839 -5.2750 -0.9855 42 1 1.2987 -1.5515 1.9567 43 1 2.5831 -2.7276 1.5617 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033542220.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:59 Heat of formation + Delta-G solvation = -35.690623 kcal Electronic energy + Delta-G solvation = -24011.588989 eV Core-core repulsion = 20672.374118 eV Total energy + Delta-G solvation = -3339.214871 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.91743 -38.76011 -37.22848 -34.89491 -33.58033 -31.84670 -29.90122 -29.24412 -27.95476 -26.65103 -26.12860 -24.57168 -23.40369 -22.10971 -20.25375 -19.82870 -18.56394 -17.14550 -16.95722 -16.34935 -15.83929 -15.60652 -15.10780 -14.73942 -14.61733 -14.15697 -13.78432 -13.57105 -13.12789 -12.96968 -12.78640 -12.37101 -12.26557 -11.91364 -11.85002 -11.68923 -11.58554 -11.33214 -11.08871 -11.03080 -10.91772 -10.87343 -10.81412 -10.30509 -10.15136 -9.91805 -9.85899 -9.57898 -9.34812 -8.71080 -8.25040 -6.89150 -5.70643 -3.12686 2.78238 3.20145 3.36137 3.42071 3.43593 3.83691 4.31013 4.40871 4.45148 4.69365 4.86178 4.90408 5.06570 5.37278 5.40104 5.41169 5.41995 5.44829 5.50718 5.52926 5.59613 5.64134 5.70190 5.78669 5.85079 5.86681 5.91021 5.93954 6.22138 6.29929 6.35780 6.53831 6.57708 6.67155 6.69908 7.01554 7.43791 7.57934 7.70982 7.80530 8.30371 8.38213 9.16654 9.77113 10.41637 11.32774 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028663 B = 0.004511 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.628158 B = 6205.579648 C = 6442.721586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.589 5.589 3 C 0.527 3.473 4 O -0.545 6.545 5 C -0.114 4.114 6 C -0.146 4.146 7 C -0.146 4.146 8 C 0.044 3.956 9 O -0.369 6.369 10 C 0.063 3.937 11 C 0.126 3.874 12 H 0.098 0.902 13 C -0.154 4.154 14 C 0.147 3.853 15 N -0.602 5.602 16 C -0.223 4.223 17 H 0.077 0.923 18 C -0.009 4.009 19 N -0.922 5.922 20 Si 0.914 3.086 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.127 3.873 25 H 0.094 0.906 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.060 0.940 35 H 0.109 0.891 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.105 0.895 40 H 0.019 0.981 41 H 0.252 0.748 42 H 0.026 0.974 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.893 15.646 -0.288 15.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.320 5.320 3 C 0.315 3.685 4 O -0.423 6.423 5 C -0.118 4.118 6 C -0.204 4.204 7 C -0.184 4.184 8 C -0.033 4.033 9 O -0.288 6.288 10 C -0.014 4.014 11 C 0.022 3.978 12 H 0.116 0.884 13 C -0.194 4.194 14 C 0.023 3.977 15 N -0.328 5.328 16 C -0.351 4.351 17 H 0.095 0.905 18 C -0.205 4.205 19 N -0.570 5.570 20 Si 0.744 3.256 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.001 3.999 25 H 0.113 0.887 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.079 0.921 35 H 0.127 0.873 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.123 0.877 40 H 0.037 0.963 41 H 0.063 0.937 42 H 0.044 0.956 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 1.562 15.497 -0.240 15.578 hybrid contribution -0.873 -0.813 0.359 1.246 sum 0.690 14.684 0.119 14.701 Atomic orbital electron populations 1.22365 0.79358 1.03902 1.02450 1.47688 1.07244 1.05334 1.71779 1.20155 0.87522 0.84855 0.75999 1.90643 1.14214 1.87006 1.50437 1.22113 0.97117 0.94836 0.97685 1.22042 0.99202 1.03199 0.95925 1.23172 1.00000 1.00601 0.94646 1.23442 0.84021 0.96599 0.99231 1.89168 1.27024 1.92342 1.20248 1.23439 1.00750 0.94407 0.82764 1.22141 0.96343 0.82129 0.97164 0.88366 1.23353 1.01723 0.98472 0.95853 1.22079 0.90279 1.00000 0.85386 1.44537 1.44874 1.36611 1.06828 1.19071 1.15646 1.07378 0.93033 0.90537 1.24762 0.99658 0.99816 0.96217 1.69800 1.36680 1.41413 1.09122 0.86086 0.79537 0.81278 0.78670 1.21666 1.21664 1.20716 1.21619 0.92934 0.91368 0.94001 0.88700 0.91016 0.92483 0.90393 0.91354 0.91724 0.89229 0.89658 0.88973 0.92135 0.87348 0.91687 0.91134 0.92157 0.87730 0.96267 0.93738 0.95608 0.94934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.92 6.43 59.85 0.38 1.30 16 2 N -0.59 -9.69 2.76 -171.84 -0.47 -10.17 16 3 C 0.53 8.53 6.34 -10.98 -0.07 8.46 16 4 O -0.55 -10.58 14.83 5.56 0.08 -10.50 16 5 C -0.11 -1.38 0.68 -154.09 -0.11 -1.49 16 6 C -0.15 -1.41 7.98 37.15 0.30 -1.12 16 7 C -0.15 -1.56 4.46 -25.17 -0.11 -1.67 16 8 C 0.04 0.45 7.63 37.93 0.29 0.74 16 9 O -0.37 -5.09 11.65 -35.23 -0.41 -5.50 16 10 C 0.06 0.78 6.58 37.93 0.25 1.03 16 11 C 0.13 2.34 3.57 -66.10 -0.24 2.10 16 12 H 0.10 1.87 7.03 -51.93 -0.37 1.51 16 13 C -0.15 -2.96 6.60 -24.58 -0.16 -3.12 16 14 C 0.15 3.38 5.04 -2.53 -0.01 3.36 16 15 N -0.60 -14.67 2.94 -170.07 -0.50 -15.17 16 16 C -0.22 -5.99 10.27 -15.06 -0.15 -6.14 16 17 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 18 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 19 N -0.92 -25.82 10.09 55.49 0.56 -25.26 16 20 Si 0.91 21.48 29.55 -169.99 -5.02 16.46 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 C 0.13 2.66 6.12 -3.07 -0.02 2.64 16 25 H 0.09 1.73 5.65 -51.93 -0.29 1.44 16 26 H 0.07 0.85 3.42 -51.93 -0.18 0.68 16 27 H 0.06 0.83 7.00 -51.93 -0.36 0.46 16 28 H 0.08 0.76 4.95 -51.93 -0.26 0.50 16 29 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.09 0.74 7.20 -51.93 -0.37 0.37 16 32 H 0.08 1.05 7.07 -51.93 -0.37 0.69 16 33 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.11 1.51 6.84 -51.93 -0.36 1.16 16 36 H 0.07 0.62 7.85 -51.93 -0.41 0.22 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 39 H 0.11 2.77 5.87 -51.93 -0.31 2.46 16 40 H 0.02 0.45 5.64 -51.93 -0.29 0.16 16 41 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 42 H 0.03 0.54 7.80 -51.93 -0.40 0.14 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 319.76 15.07 4.82 4.82 Total: -1.00 -30.82 319.76 -7.16 -37.98 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -6.47 Total: 1.57 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 0.25 Total: 5.76 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: -0.41 Total: -50.59 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.33 Total: -15.99 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.82 -7.16 -37.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033542220.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.290 kcal (2) G-P(sol) polarization free energy of solvation -30.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds