Wall clock time and date at job start Tue Mar 31 2020 05:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34773 * 120.00390 * 2 1 4 4 O 1.21275 * 120.00300 * 185.46411 * 3 2 1 5 5 C 1.50709 * 119.99597 * 5.46034 * 3 2 1 6 6 C 1.52990 * 110.45955 * 295.76540 * 5 3 2 7 7 C 1.54506 * 110.50935 * 58.52143 * 5 3 2 8 8 C 1.54478 * 104.06643 * 118.64148 * 7 5 3 9 9 O 1.44434 * 104.80041 * 336.02100 * 8 7 5 10 10 C 1.44425 * 105.27282 * 40.51122 * 9 8 7 11 11 C 1.46505 * 119.99637 * 179.97438 * 2 1 3 12 12 H 1.08998 * 110.77473 * 182.73924 * 11 2 1 13 13 C 1.55153 * 110.72327 * 59.50168 * 11 2 1 14 14 C 1.54909 * 101.58185 * 277.13999 * 13 11 2 15 15 N 1.47427 * 104.82897 * 322.98771 * 14 13 11 16 16 C 1.36938 * 125.64460 * 204.16431 * 15 14 13 17 17 H 1.08005 * 119.99634 * 179.97438 * 16 15 14 18 18 C 1.38812 * 120.00321 * 359.96323 * 16 15 14 19 19 N 1.31616 * 119.99934 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00047 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47399 * 89.99571 * 20 18 16 22 22 H 1.48502 * 109.47176 * 210.00003 * 20 18 16 23 23 H 1.48505 * 109.47265 * 329.99432 * 20 18 16 24 24 C 1.47023 * 108.70208 * 24.13155 * 15 14 13 25 25 H 1.08998 * 109.47221 * 214.58984 * 1 2 3 26 26 H 1.08996 * 109.47401 * 334.59596 * 1 2 3 27 27 H 1.09003 * 109.46541 * 94.59137 * 1 2 3 28 28 H 1.09002 * 109.47277 * 60.69958 * 6 5 3 29 29 H 1.08995 * 109.47207 * 180.70143 * 6 5 3 30 30 H 1.09003 * 109.47359 * 300.70466 * 6 5 3 31 31 H 1.09004 * 110.51113 * 237.28670 * 7 5 3 32 32 H 1.09005 * 110.51455 * 359.97438 * 7 5 3 33 33 H 1.08995 * 110.37399 * 217.19143 * 8 7 5 34 34 H 1.09000 * 110.46409 * 94.89892 * 8 7 5 35 35 H 1.09000 * 110.36508 * 200.65775 * 10 9 8 36 36 H 1.08993 * 110.46667 * 78.36641 * 10 9 8 37 37 H 1.08991 * 111.00473 * 159.05980 * 13 11 2 38 38 H 1.09010 * 111.03310 * 35.22268 * 13 11 2 39 39 H 1.08999 * 110.36196 * 204.15044 * 14 13 11 40 40 H 1.09002 * 110.37239 * 81.82540 * 14 13 11 41 41 H 0.97002 * 119.99919 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.87740 * 118.36152 * 24 15 14 43 43 H 1.09005 * 109.87586 * 239.51852 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3476 1.1695 -0.1000 5 6 1.3905 2.4693 0.1242 6 6 0.4802 2.6806 -1.0871 7 6 0.5705 2.4997 1.4333 8 6 1.1587 3.6937 2.2172 9 8 2.4964 3.8539 1.6966 10 6 2.3773 3.6487 0.2720 11 6 2.1975 -1.2688 0.0006 12 1 3.2723 -1.0947 0.0492 13 6 1.8341 -2.1131 -1.2494 14 6 0.5201 -2.7948 -0.7931 15 7 0.7251 -3.0903 0.6367 16 6 0.0811 -4.0655 1.3503 17 1 0.3030 -4.2033 2.3983 18 6 -0.8571 -4.8768 0.7270 19 7 -1.1280 -4.7083 -0.5499 20 14 -1.7361 -6.2066 1.7007 21 1 -2.9783 -5.6478 2.2921 22 1 -2.0812 -7.3345 0.7985 23 1 -0.8475 -6.6948 2.7857 24 6 1.7361 -2.1650 1.1690 25 1 -0.3633 -0.8460 0.5834 26 1 -0.3634 0.9282 0.4408 27 1 -0.3632 -0.0823 -1.0244 28 1 -0.2464 1.8699 -1.1414 29 1 -0.0432 3.6314 -0.9869 30 1 1.0816 2.6909 -1.9962 31 1 -0.4852 2.6663 1.2189 32 1 0.7060 1.5726 1.9905 33 1 1.1908 3.4690 3.2833 34 1 0.5712 4.5941 2.0375 35 1 3.3455 3.3893 -0.1561 36 1 1.9770 4.5409 -0.2094 37 1 2.6061 -2.8534 -1.4587 38 1 1.6624 -1.4747 -2.1163 39 1 0.3573 -3.7166 -1.3515 40 1 -0.3239 -2.1173 -0.9232 41 1 -1.7839 -5.2750 -0.9855 42 1 1.2987 -1.5515 1.9567 43 1 2.5831 -2.7276 1.5617 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033542220.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:59 Heat of formation + Delta-G solvation = -55.783843 kcal Electronic energy + Delta-G solvation = -24012.460296 eV Core-core repulsion = 20672.374118 eV Total energy + Delta-G solvation = -3340.086179 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.06710 -40.02813 -38.70367 -36.28195 -34.93793 -33.53650 -31.05231 -30.72253 -29.55451 -27.90064 -27.17653 -26.35762 -24.53182 -23.15161 -22.05931 -21.20311 -19.86945 -18.94262 -18.21939 -17.69330 -16.86882 -16.63910 -16.57963 -16.33662 -15.92275 -15.60179 -15.26898 -14.72028 -14.42875 -14.17124 -13.90057 -13.81493 -13.54262 -13.37863 -13.30129 -13.00182 -12.90085 -12.78216 -12.65624 -12.46932 -12.29662 -12.04538 -12.00149 -11.86349 -11.76437 -11.70817 -11.43237 -10.77146 -10.72565 -10.60798 -9.67056 -8.87502 -7.76035 -5.20070 1.48815 1.49846 1.53109 1.58455 1.91940 2.50389 2.97801 3.33665 3.35060 3.42124 3.67164 3.80087 3.87203 3.94993 4.02885 4.10361 4.25240 4.27751 4.36640 4.59135 4.61133 4.63732 4.65748 4.68108 4.75978 4.81097 4.86038 4.86075 4.91283 4.96425 4.99259 5.04057 5.08720 5.25639 5.45453 5.54773 5.66111 5.82590 5.83378 6.31499 6.41665 7.08557 7.12497 7.77572 8.41708 9.25170 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028663 B = 0.004511 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.628158 B = 6205.579648 C = 6442.721586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.590 5.590 3 C 0.522 3.478 4 O -0.583 6.583 5 C -0.110 4.110 6 C -0.143 4.143 7 C -0.145 4.145 8 C 0.041 3.959 9 O -0.401 6.401 10 C 0.063 3.937 11 C 0.136 3.864 12 H 0.095 0.905 13 C -0.140 4.140 14 C 0.155 3.845 15 N -0.616 5.616 16 C -0.238 4.238 17 H 0.076 0.924 18 C -0.058 4.058 19 N -0.944 5.944 20 Si 0.976 3.024 21 H -0.285 1.285 22 H -0.294 1.294 23 H -0.275 1.275 24 C 0.130 3.870 25 H 0.060 0.940 26 H 0.106 0.894 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.101 0.899 30 H 0.060 0.940 31 H 0.122 0.878 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.016 0.984 41 H 0.247 0.753 42 H 0.026 0.974 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.295 17.501 -0.076 17.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.321 5.321 3 C 0.312 3.688 4 O -0.463 6.463 5 C -0.113 4.113 6 C -0.200 4.200 7 C -0.183 4.183 8 C -0.035 4.035 9 O -0.320 6.320 10 C -0.014 4.014 11 C 0.031 3.969 12 H 0.113 0.887 13 C -0.179 4.179 14 C 0.031 3.969 15 N -0.343 5.343 16 C -0.367 4.367 17 H 0.094 0.906 18 C -0.251 4.251 19 N -0.593 5.593 20 Si 0.805 3.195 21 H -0.212 1.212 22 H -0.221 1.221 23 H -0.200 1.200 24 C 0.004 3.996 25 H 0.079 0.921 26 H 0.124 0.876 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.120 0.880 30 H 0.079 0.921 31 H 0.140 0.860 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.117 0.883 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.033 0.967 41 H 0.057 0.943 42 H 0.044 0.956 43 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 0.373 17.373 -0.017 17.377 hybrid contribution -0.458 -1.365 0.328 1.477 sum -0.085 16.008 0.311 16.012 Atomic orbital electron populations 1.22358 0.78213 1.04184 1.02497 1.47716 1.07823 1.04756 1.71798 1.20979 0.87337 0.85917 0.74600 1.90626 1.16074 1.87629 1.51977 1.22168 0.97363 0.92050 0.99721 1.22071 0.98642 1.04962 0.94317 1.23216 1.01627 0.99967 0.93492 1.23649 0.82880 0.97624 0.99315 1.89136 1.29287 1.92541 1.21085 1.23496 0.99767 0.95670 0.82432 1.21859 0.96391 0.82912 0.95691 0.88665 1.23199 0.99627 0.98485 0.96636 1.21844 0.92023 0.98516 0.84525 1.44706 1.45296 1.36805 1.07477 1.19368 1.15926 1.08047 0.93386 0.90584 1.25498 1.00560 1.01822 0.97172 1.70027 1.36988 1.42050 1.10270 0.85114 0.78450 0.78542 0.77398 1.21197 1.22096 1.19985 1.21649 0.91942 0.91158 0.94857 0.92087 0.87626 0.91875 0.90398 0.88047 0.92070 0.85974 0.91772 0.88603 0.89075 0.89881 0.88326 0.91141 0.90399 0.91228 0.96654 0.94279 0.95566 0.95293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.97 6.43 127.77 0.82 2.80 16 2 N -0.59 -18.95 2.76 -815.97 -2.25 -21.20 16 3 C 0.52 16.39 6.34 87.66 0.56 16.95 16 4 O -0.58 -22.67 14.83 -3.01 -0.04 -22.72 16 5 C -0.11 -2.39 0.68 -51.91 -0.04 -2.42 16 6 C -0.14 -2.22 7.98 71.98 0.57 -1.65 16 7 C -0.15 -2.65 4.46 31.61 0.14 -2.51 16 8 C 0.04 0.73 7.63 72.48 0.55 1.28 16 9 O -0.40 -10.36 11.65 -148.98 -1.74 -12.10 16 10 C 0.06 1.42 6.58 72.48 0.48 1.90 16 11 C 0.14 5.05 3.57 46.17 0.16 5.22 16 12 H 0.10 3.65 7.03 -2.39 -0.02 3.63 16 13 C -0.14 -5.35 6.60 31.98 0.21 -5.14 16 14 C 0.16 7.25 5.04 86.85 0.44 7.68 16 15 N -0.62 -30.50 2.94 -691.98 -2.03 -32.54 16 16 C -0.24 -12.95 10.27 84.03 0.86 -12.09 16 17 H 0.08 4.03 7.83 -2.91 -0.02 4.00 16 18 C -0.06 -3.14 5.49 84.86 0.47 -2.67 16 19 N -0.94 -53.75 10.09 21.65 0.22 -53.53 16 20 Si 0.98 44.35 29.55 68.60 2.03 46.38 16 21 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 24 C 0.13 5.49 6.12 86.73 0.53 6.02 16 25 H 0.06 2.20 5.65 -2.39 -0.01 2.19 16 26 H 0.11 2.23 3.42 -2.39 -0.01 2.23 16 27 H 0.06 1.73 7.00 -2.39 -0.02 1.71 16 28 H 0.08 1.23 4.95 -2.39 -0.01 1.22 16 29 H 0.10 0.96 8.12 -2.39 -0.02 0.94 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.12 1.43 7.20 -2.38 -0.02 1.41 16 32 H 0.06 1.46 7.07 -2.38 -0.02 1.45 16 33 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.08 2.28 6.84 -2.39 -0.02 2.27 16 36 H 0.10 1.53 7.85 -2.39 -0.02 1.51 16 37 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 38 H 0.08 2.69 8.14 -2.38 -0.02 2.67 16 39 H 0.07 3.78 5.87 -2.39 -0.01 3.77 16 40 H 0.02 0.73 5.64 -2.39 -0.01 0.72 16 41 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16 42 H 0.03 1.11 7.80 -2.39 -0.02 1.09 16 43 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 Total: -1.00 -68.10 319.76 2.95 -65.15 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 1.01 Total: 15.18 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: 5.76 Total: 15.38 kcal Atomic # 7 Polarization: -103.21 SS G_CDS: -4.06 Total: -107.27 kcal Atomic # 8 Polarization: -33.03 SS G_CDS: -1.78 Total: -34.81 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -68.10 2.95 -65.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033542220.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.364 kcal (2) G-P(sol) polarization free energy of solvation -68.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds