Wall clock time and date at job start Tue Mar 31 2020 05:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00203 * 2 1 4 4 H 1.48505 * 109.46808 * 269.99522 * 3 2 1 5 5 H 1.48496 * 109.46731 * 29.99117 * 3 2 1 6 6 H 1.48501 * 109.47090 * 149.99746 * 3 2 1 7 7 C 1.38814 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00181 * 359.97438 * 7 2 1 9 9 N 1.36938 * 120.00045 * 180.02562 * 7 2 1 10 10 C 1.46506 * 120.00001 * 180.02562 * 9 7 2 11 11 H 1.09007 * 109.46855 * 34.99473 * 10 9 7 12 12 C 1.52996 * 109.47185 * 154.99716 * 10 9 7 13 13 C 1.52998 * 109.46883 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47133 * 299.99417 * 13 12 10 15 15 H 1.08999 * 109.47722 * 300.00708 * 14 13 12 16 16 N 1.46498 * 109.47173 * 180.02562 * 14 13 12 17 17 C 1.34784 * 119.99937 * 155.00355 * 16 14 13 18 18 O 1.21276 * 119.99752 * 0.02562 * 17 16 14 19 19 C 1.50696 * 119.99721 * 180.02562 * 17 16 14 20 20 H 1.08997 * 110.67758 * 302.03122 * 19 17 16 21 21 C 1.54998 * 110.61941 * 65.00300 * 19 17 16 22 22 C 1.54817 * 102.12466 * 155.53916 * 21 19 17 23 23 C 1.54100 * 104.18606 * 339.09929 * 22 21 19 24 24 O 1.43746 * 107.29659 * 357.97343 * 23 22 21 25 25 C 1.53005 * 109.46636 * 60.00325 * 14 13 12 26 26 C 1.52993 * 109.47373 * 299.99834 * 25 14 13 27 27 H 0.97000 * 120.00478 * 0.02562 * 1 2 3 28 28 H 0.96994 * 120.00097 * 359.97438 * 9 7 2 29 29 H 1.08993 * 109.47077 * 59.99719 * 12 10 9 30 30 H 1.08998 * 109.46732 * 299.99763 * 12 10 9 31 31 H 1.09005 * 109.47198 * 180.02562 * 13 12 10 32 32 H 1.08993 * 109.47588 * 59.99916 * 13 12 10 33 33 H 0.96994 * 120.00010 * 335.00525 * 16 14 13 34 34 H 1.09002 * 110.90913 * 37.32131 * 21 19 17 35 35 H 1.08997 * 110.90321 * 273.75248 * 21 19 17 36 36 H 1.08991 * 110.48506 * 97.77523 * 22 21 19 37 37 H 1.08998 * 110.48536 * 220.42234 * 22 21 19 38 38 H 1.09002 * 109.87699 * 117.39650 * 23 22 21 39 39 H 1.08999 * 109.87889 * 238.54603 * 23 22 21 40 40 H 1.09001 * 109.47124 * 60.00457 * 25 14 13 41 41 H 1.09001 * 109.46845 * 179.97438 * 25 14 13 42 42 H 1.09001 * 109.47504 * 300.00390 * 26 25 14 43 43 H 1.08997 * 109.47182 * 179.97438 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4475 2.6526 0.6998 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0014 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 1 3.5649 -3.2064 -0.5887 12 6 5.4995 -2.2588 -0.6080 13 6 6.2642 -3.5840 -0.6086 14 6 6.4099 -4.0893 0.8282 15 1 6.9572 -3.3542 1.4182 16 7 7.1427 -5.3579 0.8277 17 6 7.8250 -5.7424 1.9246 18 8 7.8319 -5.0385 2.9121 19 6 8.5792 -7.0471 1.9239 20 1 7.9084 -7.8793 1.7103 21 6 9.7410 -7.0054 0.8988 22 6 10.7163 -8.0636 1.4695 23 6 10.3141 -8.1874 2.9519 24 8 9.2523 -7.2473 3.1866 25 6 5.0225 -4.3014 1.4373 26 6 4.2577 -2.9763 1.4378 27 1 -0.4851 0.8400 -0.0004 28 1 3.8646 -0.3622 0.0007 29 1 6.0466 -1.5234 -0.0183 30 1 5.3957 -1.8992 -1.6317 31 1 7.2528 -3.4328 -1.0421 32 1 5.7169 -4.3191 -1.1985 33 1 7.1368 -5.9211 0.0380 34 1 10.2057 -6.0196 0.8774 35 1 9.3941 -7.2915 -0.0941 36 1 10.5864 -9.0172 0.9580 37 1 11.7468 -7.7195 1.3812 38 1 9.9655 -9.1994 3.1581 39 1 11.1666 -7.9500 3.5883 40 1 4.4751 -5.0366 0.8473 41 1 5.1262 -4.6618 2.4607 42 1 4.8050 -2.2411 2.0278 43 1 3.2692 -3.1275 1.8713 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034588708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:19 Heat of formation + Delta-G solvation = -83.697368 kcal Electronic energy + Delta-G solvation = -22429.497711 eV Core-core repulsion = 19088.201112 eV Total energy + Delta-G solvation = -3341.296600 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.57112 -39.12911 -37.76545 -34.99005 -33.23469 -32.43634 -31.12997 -30.48948 -29.97651 -27.58540 -24.36974 -23.09477 -22.44254 -21.93269 -21.01537 -20.49881 -19.63412 -17.92989 -17.40335 -17.01703 -16.28406 -15.50675 -15.39008 -15.08244 -14.73999 -14.27120 -14.00427 -13.83211 -13.65306 -13.39427 -12.92664 -12.66705 -12.34582 -12.18453 -12.14235 -11.98530 -11.84868 -11.73292 -11.27563 -11.13431 -10.88325 -10.87060 -10.65239 -10.26881 -10.21804 -10.14756 -9.81869 -9.69186 -9.54884 -9.03419 -8.86577 -7.23882 -5.74691 -3.09861 2.45962 2.70845 3.39763 3.43078 3.47559 3.66792 4.02582 4.28516 4.42170 4.61560 4.62538 4.68184 4.79533 4.89439 4.96768 5.11222 5.15871 5.21970 5.34801 5.41725 5.47394 5.52579 5.55393 5.57619 5.62271 5.76801 5.79712 5.93240 6.10248 6.17817 6.19147 6.35758 6.37075 6.46847 6.55410 6.65451 6.90943 7.06628 7.37627 8.02153 8.11408 8.44689 9.23565 9.96332 10.16339 11.43787 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.046368 B = 0.002962 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.715510 B = 9450.258525 C = 9572.898453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.884 3.116 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.241 4.241 8 H 0.090 0.910 9 N -0.750 5.750 10 C 0.182 3.818 11 H 0.055 0.945 12 C -0.124 4.124 13 C -0.118 4.118 14 C 0.146 3.854 15 H 0.087 0.913 16 N -0.723 5.723 17 C 0.517 3.483 18 O -0.517 6.517 19 C 0.058 3.942 20 H 0.096 0.904 21 C -0.144 4.144 22 C -0.155 4.155 23 C 0.043 3.957 24 O -0.348 6.348 25 C -0.125 4.125 26 C -0.133 4.133 27 H 0.259 0.741 28 H 0.360 0.640 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.398 0.602 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.087 0.913 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.401 -17.859 -1.392 28.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.193 4.193 3 Si 0.715 3.285 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.371 4.371 8 H 0.108 0.892 9 N -0.392 5.392 10 C 0.072 3.928 11 H 0.073 0.927 12 C -0.163 4.163 13 C -0.156 4.156 14 C 0.042 3.958 15 H 0.105 0.895 16 N -0.375 5.375 17 C 0.301 3.699 18 O -0.391 6.391 19 C -0.003 4.003 20 H 0.114 0.886 21 C -0.182 4.182 22 C -0.192 4.192 23 C -0.034 4.034 24 O -0.266 6.266 25 C -0.164 4.164 26 C -0.174 4.174 27 H 0.069 0.931 28 H 0.193 0.807 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.231 0.769 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.106 0.894 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 22.103 -17.291 -0.453 28.067 hybrid contribution 0.568 0.750 -0.479 1.055 sum 22.672 -16.541 -0.932 28.080 Atomic orbital electron populations 1.69698 1.05114 1.25784 1.57728 1.24675 0.95232 0.97215 1.02152 0.86548 0.79279 0.85012 0.77702 1.21153 1.21819 1.20269 1.19080 0.80633 0.94655 1.42732 0.89237 1.42798 1.03997 1.02077 1.90289 1.20218 0.90202 0.89110 0.93226 0.92679 1.21792 0.96907 0.95861 1.01754 1.21730 1.00495 0.98461 0.94933 1.21132 0.92725 0.84457 0.97481 0.89459 1.46046 1.51839 1.23783 1.15824 1.20118 0.79287 0.87003 0.83476 1.90753 1.61171 1.54287 1.32874 1.23038 0.95370 0.96216 0.85718 0.88607 1.23115 0.95270 1.00968 0.98858 1.22945 1.00629 0.99731 0.95926 1.23249 0.90766 0.93303 0.96115 1.89062 1.45907 1.63665 1.27962 1.21901 0.94570 0.99214 1.00709 1.22189 1.00043 0.94775 1.00352 0.93108 0.80700 0.92075 0.91232 0.91786 0.91297 0.76878 0.89811 0.89228 0.90209 0.90038 0.91987 0.89435 0.92050 0.92170 0.92588 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.54 13.97 55.49 0.78 -28.76 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 3 Si 0.88 22.29 27.74 -169.99 -4.71 17.57 16 4 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 6 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 7 C -0.24 -6.78 10.41 -15.06 -0.16 -6.94 16 8 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 9 N -0.75 -17.61 4.93 -53.42 -0.26 -17.87 16 10 C 0.18 3.38 2.77 -67.93 -0.19 3.19 16 11 H 0.06 1.06 8.08 -51.92 -0.42 0.64 16 12 C -0.12 -1.82 5.39 -26.73 -0.14 -1.97 16 13 C -0.12 -1.32 5.39 -26.73 -0.14 -1.46 16 14 C 0.15 1.83 2.45 -67.93 -0.17 1.66 16 15 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 16 N -0.72 -7.29 5.07 -53.81 -0.27 -7.56 16 17 C 0.52 6.46 7.17 -10.98 -0.08 6.38 16 18 O -0.52 -9.15 16.23 -13.47 -0.22 -9.37 16 19 C 0.06 0.53 3.77 -26.83 -0.10 0.43 16 20 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 21 C -0.14 -0.89 6.56 -24.72 -0.16 -1.05 16 22 C -0.15 -0.78 7.01 -25.20 -0.18 -0.96 16 23 C 0.04 0.31 7.70 37.73 0.29 0.60 16 24 O -0.35 -4.12 10.81 -54.26 -0.59 -4.71 16 25 C -0.12 -1.81 5.50 -26.73 -0.15 -1.96 16 26 C -0.13 -2.36 5.50 -26.73 -0.15 -2.51 16 27 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 28 H 0.36 8.37 5.66 -40.82 -0.23 8.13 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.40 2.63 8.60 -40.82 -0.35 2.28 16 34 H 0.08 0.61 8.05 -51.93 -0.42 0.19 16 35 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 LS Contribution 342.92 15.07 5.17 5.17 Total: -1.00 -35.37 342.92 -8.85 -44.22 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -7.32 Total: 5.90 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -1.42 Total: -4.59 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: 0.24 Total: -54.20 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -0.81 Total: -14.08 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.71 Total: 17.57 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.37 -8.85 -44.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034588708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.475 kcal (2) G-P(sol) polarization free energy of solvation -35.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds