Wall clock time and date at job start Tue Mar 31 2020 05:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00203 * 2 1 4 4 H 1.48505 * 109.46808 * 269.99522 * 3 2 1 5 5 H 1.48496 * 109.46731 * 29.99117 * 3 2 1 6 6 H 1.48501 * 109.47090 * 149.99746 * 3 2 1 7 7 C 1.38814 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00181 * 359.97438 * 7 2 1 9 9 N 1.36938 * 120.00045 * 180.02562 * 7 2 1 10 10 C 1.46506 * 120.00001 * 180.02562 * 9 7 2 11 11 H 1.09007 * 109.46855 * 34.99473 * 10 9 7 12 12 C 1.52996 * 109.47185 * 154.99716 * 10 9 7 13 13 C 1.52998 * 109.46883 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47133 * 299.99417 * 13 12 10 15 15 H 1.08999 * 109.47722 * 300.00708 * 14 13 12 16 16 N 1.46498 * 109.47173 * 180.02562 * 14 13 12 17 17 C 1.34784 * 119.99937 * 155.00355 * 16 14 13 18 18 O 1.21276 * 119.99752 * 0.02562 * 17 16 14 19 19 C 1.50696 * 119.99721 * 180.02562 * 17 16 14 20 20 H 1.08997 * 110.67758 * 302.03122 * 19 17 16 21 21 C 1.54998 * 110.61941 * 65.00300 * 19 17 16 22 22 C 1.54817 * 102.12466 * 155.53916 * 21 19 17 23 23 C 1.54100 * 104.18606 * 339.09929 * 22 21 19 24 24 O 1.43746 * 107.29659 * 357.97343 * 23 22 21 25 25 C 1.53005 * 109.46636 * 60.00325 * 14 13 12 26 26 C 1.52993 * 109.47373 * 299.99834 * 25 14 13 27 27 H 0.97000 * 120.00478 * 0.02562 * 1 2 3 28 28 H 0.96994 * 120.00097 * 359.97438 * 9 7 2 29 29 H 1.08993 * 109.47077 * 59.99719 * 12 10 9 30 30 H 1.08998 * 109.46732 * 299.99763 * 12 10 9 31 31 H 1.09005 * 109.47198 * 180.02562 * 13 12 10 32 32 H 1.08993 * 109.47588 * 59.99916 * 13 12 10 33 33 H 0.96994 * 120.00010 * 335.00525 * 16 14 13 34 34 H 1.09002 * 110.90913 * 37.32131 * 21 19 17 35 35 H 1.08997 * 110.90321 * 273.75248 * 21 19 17 36 36 H 1.08991 * 110.48506 * 97.77523 * 22 21 19 37 37 H 1.08998 * 110.48536 * 220.42234 * 22 21 19 38 38 H 1.09002 * 109.87699 * 117.39650 * 23 22 21 39 39 H 1.08999 * 109.87889 * 238.54603 * 23 22 21 40 40 H 1.09001 * 109.47124 * 60.00457 * 25 14 13 41 41 H 1.09001 * 109.46845 * 179.97438 * 25 14 13 42 42 H 1.09001 * 109.47504 * 300.00390 * 26 25 14 43 43 H 1.08997 * 109.47182 * 179.97438 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4475 2.6526 0.6998 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0014 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 1 3.5649 -3.2064 -0.5887 12 6 5.4995 -2.2588 -0.6080 13 6 6.2642 -3.5840 -0.6086 14 6 6.4099 -4.0893 0.8282 15 1 6.9572 -3.3542 1.4182 16 7 7.1427 -5.3579 0.8277 17 6 7.8250 -5.7424 1.9246 18 8 7.8319 -5.0385 2.9121 19 6 8.5792 -7.0471 1.9239 20 1 7.9084 -7.8793 1.7103 21 6 9.7410 -7.0054 0.8988 22 6 10.7163 -8.0636 1.4695 23 6 10.3141 -8.1874 2.9519 24 8 9.2523 -7.2473 3.1866 25 6 5.0225 -4.3014 1.4373 26 6 4.2577 -2.9763 1.4378 27 1 -0.4851 0.8400 -0.0004 28 1 3.8646 -0.3622 0.0007 29 1 6.0466 -1.5234 -0.0183 30 1 5.3957 -1.8992 -1.6317 31 1 7.2528 -3.4328 -1.0421 32 1 5.7169 -4.3191 -1.1985 33 1 7.1368 -5.9211 0.0380 34 1 10.2057 -6.0196 0.8774 35 1 9.3941 -7.2915 -0.0941 36 1 10.5864 -9.0172 0.9580 37 1 11.7468 -7.7195 1.3812 38 1 9.9655 -9.1994 3.1581 39 1 11.1666 -7.9500 3.5883 40 1 4.4751 -5.0366 0.8473 41 1 5.1262 -4.6618 2.4607 42 1 4.8050 -2.2411 2.0278 43 1 3.2692 -3.1275 1.8713 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034588708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:19 Heat of formation + Delta-G solvation = -109.480426 kcal Electronic energy + Delta-G solvation = -22430.615749 eV Core-core repulsion = 19088.201112 eV Total energy + Delta-G solvation = -3342.414637 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.44016 -40.05583 -38.93581 -36.47252 -34.74027 -33.26230 -32.75681 -31.70802 -30.87263 -28.92008 -25.54557 -24.54522 -23.64624 -22.39725 -22.36635 -21.48228 -21.01267 -19.58492 -18.55589 -17.75778 -17.16706 -16.82277 -16.40959 -16.11281 -15.96996 -15.68467 -15.09019 -14.98731 -14.71880 -14.44721 -14.39336 -14.33193 -13.65676 -13.38690 -13.11514 -12.93684 -12.88353 -12.67274 -12.41666 -12.35733 -12.26741 -12.05742 -11.99003 -11.79503 -11.67636 -11.47762 -11.21902 -10.96914 -10.88916 -10.58457 -10.07204 -9.29557 -8.01489 -5.34189 1.37962 1.41274 1.48455 1.53276 1.88164 2.49211 3.04003 3.29336 3.45856 3.59279 3.70384 3.76754 3.85349 3.96496 4.11212 4.18447 4.24807 4.31737 4.34952 4.36694 4.52177 4.57998 4.62177 4.73306 4.83053 4.85206 4.92539 4.94085 5.03105 5.10642 5.13481 5.19009 5.23489 5.25913 5.46065 5.50389 5.59534 5.79233 5.82072 6.23427 6.56716 7.09622 7.24531 7.87034 8.05418 9.20271 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.046368 B = 0.002962 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.715510 B = 9450.258525 C = 9572.898453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.068 4.068 3 Si 0.955 3.045 4 H -0.274 1.274 5 H -0.299 1.299 6 H -0.255 1.255 7 C -0.226 4.226 8 H 0.056 0.944 9 N -0.754 5.754 10 C 0.175 3.825 11 H 0.050 0.950 12 C -0.118 4.118 13 C -0.105 4.105 14 C 0.152 3.848 15 H 0.064 0.936 16 N -0.702 5.702 17 C 0.512 3.488 18 O -0.579 6.579 19 C 0.056 3.944 20 H 0.123 0.877 21 C -0.138 4.138 22 C -0.147 4.147 23 C 0.032 3.968 24 O -0.394 6.394 25 C -0.115 4.115 26 C -0.126 4.126 27 H 0.257 0.743 28 H 0.364 0.636 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.420 0.580 34 H 0.069 0.931 35 H 0.124 0.876 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.043 0.957 42 H 0.045 0.955 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.428 -19.184 -3.480 32.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.259 4.259 3 Si 0.783 3.217 4 H -0.200 1.200 5 H -0.226 1.226 6 H -0.180 1.180 7 C -0.357 4.357 8 H 0.074 0.926 9 N -0.396 5.396 10 C 0.067 3.933 11 H 0.068 0.932 12 C -0.156 4.156 13 C -0.143 4.143 14 C 0.047 3.953 15 H 0.082 0.918 16 N -0.355 5.355 17 C 0.299 3.701 18 O -0.458 6.458 19 C -0.004 4.004 20 H 0.141 0.859 21 C -0.176 4.176 22 C -0.184 4.184 23 C -0.044 4.044 24 O -0.313 6.313 25 C -0.154 4.154 26 C -0.166 4.166 27 H 0.065 0.935 28 H 0.197 0.803 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.258 0.742 34 H 0.088 0.912 35 H 0.142 0.858 36 H 0.123 0.877 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 25.192 -18.684 -2.590 31.471 hybrid contribution -0.403 1.036 0.227 1.135 sum 24.790 -17.648 -2.363 30.521 Atomic orbital electron populations 1.69883 1.07137 1.26568 1.60115 1.25511 0.96118 1.01272 1.03004 0.85401 0.78476 0.79656 0.78187 1.20027 1.22637 1.17972 1.19043 0.82743 0.93313 1.40580 0.92578 1.42857 1.02438 1.04152 1.90182 1.20485 0.92215 0.86949 0.93602 0.93227 1.21706 0.94233 0.98081 1.01612 1.21654 1.01911 0.96809 0.93907 1.20881 0.91068 0.85216 0.98119 0.91774 1.45783 1.50440 1.23046 1.16223 1.20865 0.78825 0.87681 0.82772 1.90726 1.63440 1.56391 1.35218 1.23230 0.96495 0.94680 0.86029 0.85938 1.23159 0.94054 1.00782 0.99576 1.22956 1.00671 1.00624 0.94197 1.23487 0.89867 0.93062 0.97962 1.89020 1.47412 1.64998 1.29885 1.21776 0.95862 0.97370 1.00385 1.22023 0.98636 0.96492 0.99496 0.93456 0.80276 0.92143 0.90386 0.88675 0.89182 0.74225 0.91218 0.85776 0.87746 0.89294 0.90672 0.89537 0.90514 0.93862 0.93635 0.94567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.18 13.97 21.65 0.30 -63.87 16 2 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 3 Si 0.96 46.28 27.74 68.60 1.90 48.19 16 4 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 5 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 6 H -0.25 -11.28 6.52 99.48 0.65 -10.64 16 7 C -0.23 -12.97 10.41 84.03 0.87 -12.09 16 8 H 0.06 3.53 8.06 -2.91 -0.02 3.51 16 9 N -0.75 -35.19 4.93 -322.92 -1.59 -36.78 16 10 C 0.18 6.39 2.77 44.99 0.12 6.52 16 11 H 0.05 1.87 8.08 -2.38 -0.02 1.86 16 12 C -0.12 -3.13 5.39 30.59 0.16 -2.97 16 13 C -0.10 -1.94 5.39 30.59 0.16 -1.77 16 14 C 0.15 3.52 2.45 44.99 0.11 3.63 16 15 H 0.06 1.85 7.58 -2.39 -0.02 1.83 16 16 N -0.70 -12.27 5.07 -442.53 -2.24 -14.51 16 17 C 0.51 12.19 7.17 87.65 0.63 12.82 16 18 O -0.58 -20.94 16.23 15.18 0.25 -20.70 16 19 C 0.06 0.91 3.77 30.53 0.12 1.03 16 20 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 21 C -0.14 -1.21 6.56 31.90 0.21 -1.00 16 22 C -0.15 -0.99 7.01 31.59 0.22 -0.77 16 23 C 0.03 0.41 7.70 72.35 0.56 0.97 16 24 O -0.39 -9.09 10.81 -130.78 -1.41 -10.50 16 25 C -0.11 -3.27 5.50 30.59 0.17 -3.11 16 26 C -0.13 -4.55 5.50 30.59 0.17 -4.38 16 27 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 28 H 0.36 16.37 5.66 -92.71 -0.52 15.85 16 29 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.42 3.69 8.60 -92.71 -0.80 2.89 16 34 H 0.07 0.83 8.05 -2.39 -0.02 0.81 16 35 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 37 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -81.96 342.92 0.80 -81.17 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -0.38 Total: 21.74 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: 3.97 Total: -4.73 kcal Atomic # 7 Polarization: -111.64 SS G_CDS: -3.53 Total: -115.17 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -1.17 Total: -31.19 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 1.90 Total: 48.19 kcal Total: -81.96 0.80 -81.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034588708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.314 kcal (2) G-P(sol) polarization free energy of solvation -81.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds