Wall clock time and date at job start Tue Mar 31 2020 05:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 115.56026 * 2 1 4 4 C 1.53075 * 117.51743 * 214.29925 * 2 1 3 5 5 C 1.53002 * 117.50134 * 145.68777 * 2 1 3 6 6 H 1.09001 * 117.49597 * 215.00052 * 5 2 1 7 7 C 1.50696 * 117.49978 * 0.02562 * 5 2 1 8 8 O 1.21278 * 119.99741 * 359.90595 * 7 5 2 9 9 N 1.34773 * 119.99984 * 179.91626 * 7 5 2 10 10 C 1.46505 * 120.00079 * 180.02562 * 9 7 5 11 11 C 1.52997 * 109.47220 * 179.97438 * 10 9 7 12 12 H 1.09011 * 109.51258 * 59.89580 * 11 10 9 13 13 C 1.53289 * 109.51241 * 179.97438 * 11 10 9 14 14 N 1.47149 * 108.38720 * 172.22546 * 13 11 10 15 15 C 1.36939 * 120.98518 * 129.18996 * 14 13 11 16 16 H 1.08008 * 119.99822 * 333.46696 * 15 14 13 17 17 C 1.38806 * 120.00077 * 153.46414 * 15 14 13 18 18 N 1.31620 * 120.00308 * 343.56026 * 17 15 14 19 19 Si 1.86808 * 119.99921 * 163.56435 * 17 15 14 20 20 H 1.48500 * 109.47286 * 59.99870 * 19 17 15 21 21 H 1.48497 * 109.46963 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46849 * 299.99584 * 19 17 15 23 23 C 1.47152 * 118.03669 * 309.46893 * 14 13 11 24 24 C 1.53297 * 108.38278 * 50.53042 * 23 14 13 25 25 O 1.42955 * 109.22345 * 307.70013 * 24 23 14 26 26 H 1.09000 * 109.47065 * 274.30801 * 1 2 3 27 27 H 1.08994 * 109.47396 * 34.30801 * 1 2 3 28 28 H 1.09002 * 109.46833 * 154.31366 * 1 2 3 29 29 H 1.09003 * 109.47690 * 205.69145 * 3 2 1 30 30 H 1.09008 * 109.47464 * 325.69215 * 3 2 1 31 31 H 1.09000 * 109.47210 * 85.69050 * 3 2 1 32 32 H 1.08995 * 117.49447 * 145.02940 * 4 2 1 33 33 H 1.09003 * 117.50772 * 359.97438 * 4 2 1 34 34 H 0.96998 * 120.00329 * 359.97438 * 9 7 5 35 35 H 1.08998 * 109.47281 * 59.98806 * 10 9 7 36 36 H 1.08999 * 109.46401 * 299.99221 * 10 9 7 37 37 H 1.09004 * 109.68558 * 52.50351 * 13 11 10 38 38 H 1.09004 * 109.68506 * 291.95067 * 13 11 10 39 39 H 0.97002 * 119.99982 * 179.97438 * 18 17 15 40 40 H 1.08993 * 109.68544 * 170.25930 * 23 14 13 41 41 H 1.09001 * 109.67908 * 290.81212 * 23 14 13 42 42 H 1.09005 * 109.50687 * 187.77608 * 24 23 14 43 43 H 1.08990 * 109.51338 * 67.62594 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2372 -1.1215 -0.7650 5 6 2.2365 -1.1210 0.7650 6 1 3.1714 -0.8749 1.2686 7 6 1.3721 -2.1409 1.4604 8 8 0.1640 -2.0529 1.4018 9 7 1.9417 -3.1508 2.1475 10 6 1.1015 -4.1427 2.8231 11 6 1.9906 -5.1726 3.5228 12 1 2.6223 -4.6702 4.2556 13 6 1.1123 -6.2106 4.2306 14 7 1.9800 -7.2872 4.7337 15 6 1.9043 -7.7030 6.0362 16 1 1.5596 -7.0228 6.8011 17 6 2.2705 -8.9988 6.3735 18 7 2.3772 -9.9175 5.4371 19 14 2.6118 -9.4387 8.1567 20 1 1.3955 -9.1863 8.9704 21 1 2.9816 -10.8738 8.2504 22 1 3.7303 -8.6056 8.6667 23 6 2.9360 -7.8996 3.7975 24 6 3.7254 -6.7792 3.1109 25 8 2.8109 -5.8314 2.5550 26 1 -0.3633 0.0772 1.0248 27 1 -0.3634 0.8488 -0.5792 28 1 -0.3633 -0.9261 -0.4455 29 1 3.1823 1.3086 -0.4455 30 1 1.5811 2.0744 -0.5793 31 1 2.2772 1.7414 1.0247 32 1 3.1723 -0.8755 -1.2680 33 1 1.6124 -1.8596 -1.2680 34 1 2.9080 -3.2213 2.1941 35 1 0.4717 -4.6456 2.0892 36 1 0.4727 -3.6441 3.5607 37 1 0.3889 -6.6212 3.5260 38 1 0.5885 -5.7416 5.0636 39 1 2.6334 -10.8228 5.6728 40 1 3.6199 -8.5492 4.3436 41 1 2.3963 -8.4801 3.0492 42 1 4.3401 -7.2015 2.3159 43 1 4.3642 -6.2834 3.8416 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035339545.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:45 Heat of formation + Delta-G solvation = -39.371845 kcal Electronic energy + Delta-G solvation = -22487.645628 eV Core-core repulsion = 19148.271128 eV Total energy + Delta-G solvation = -3339.374501 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.24499 -38.64753 -37.26848 -34.83933 -34.26249 -31.62810 -30.78721 -29.56937 -27.59931 -27.56482 -25.81355 -23.74547 -23.13419 -21.71642 -20.52974 -19.72297 -19.11317 -17.17005 -16.87651 -16.11412 -15.72891 -15.16494 -14.95753 -14.51858 -14.40769 -14.20576 -13.86076 -13.78464 -13.36530 -13.19644 -13.06038 -12.72262 -12.66638 -12.36540 -12.11814 -11.93621 -11.56698 -11.38067 -11.13892 -10.86189 -10.74664 -10.43153 -10.36841 -10.31191 -10.02276 -10.00964 -9.72855 -9.45504 -9.09135 -8.91539 -8.56950 -6.77896 -5.87035 -3.31385 2.54316 3.17541 3.33290 3.39097 3.39951 3.63086 4.21012 4.40592 4.46321 4.54198 4.65127 4.90137 5.01851 5.13511 5.30470 5.36673 5.44978 5.46725 5.49009 5.52273 5.71820 5.75766 5.79075 5.83896 5.85827 5.90477 6.02423 6.04080 6.13434 6.27372 6.34309 6.40325 6.46110 6.59025 6.73080 7.07420 7.48479 7.62584 7.67672 7.82754 8.30677 8.33257 9.08545 9.71099 10.28117 11.21160 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.041841 B = 0.003047 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.031624 B = 9185.744185 C = 9395.234884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.096 4.096 3 C -0.116 4.116 4 C -0.147 4.147 5 C -0.188 4.188 6 H 0.120 0.880 7 C 0.539 3.461 8 O -0.541 6.541 9 N -0.716 5.716 10 C 0.131 3.869 11 C 0.065 3.935 12 H 0.058 0.942 13 C 0.122 3.878 14 N -0.594 5.594 15 C -0.257 4.257 16 H 0.068 0.932 17 C 0.003 3.997 18 N -0.903 5.903 19 Si 0.906 3.094 20 H -0.281 1.281 21 H -0.289 1.289 22 H -0.283 1.283 23 C 0.140 3.860 24 C 0.039 3.961 25 O -0.390 6.390 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.403 0.597 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.030 0.970 38 H 0.064 0.936 39 H 0.256 0.744 40 H 0.094 0.906 41 H 0.028 0.972 42 H 0.081 0.919 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.786 17.684 -10.109 20.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.097 4.097 3 C -0.173 4.173 4 C -0.184 4.184 5 C -0.209 4.209 6 H 0.138 0.862 7 C 0.326 3.674 8 O -0.419 6.419 9 N -0.367 5.367 10 C 0.007 3.993 11 C 0.005 3.995 12 H 0.076 0.924 13 C -0.006 4.006 14 N -0.318 5.318 15 C -0.386 4.386 16 H 0.086 0.914 17 C -0.196 4.196 18 N -0.547 5.547 19 Si 0.736 3.264 20 H -0.208 1.208 21 H -0.215 1.215 22 H -0.210 1.210 23 C 0.014 3.986 24 C -0.038 4.038 25 O -0.309 6.309 26 H 0.086 0.914 27 H 0.065 0.935 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.238 0.762 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.048 0.952 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.112 0.888 41 H 0.046 0.954 42 H 0.100 0.900 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.925 17.552 -10.284 20.434 hybrid contribution 0.867 -0.663 1.316 1.709 sum 2.792 16.889 -8.969 19.326 Atomic orbital electron populations 1.21347 0.90641 1.01336 1.02615 1.21593 0.96023 0.90462 1.01592 1.21396 0.99902 0.93870 1.02143 1.23220 1.02756 1.01484 0.90959 1.22364 1.01903 1.00789 0.95815 0.86162 1.19633 0.88112 0.81276 0.78415 1.90691 1.14526 1.75163 1.61531 1.45907 1.10832 1.26999 1.52940 1.21413 0.93024 0.88083 0.96745 1.22808 0.93151 0.92924 0.90622 0.92405 1.21446 0.92342 0.89913 0.96849 1.44045 1.39105 1.40048 1.08587 1.19156 1.41901 0.94397 0.83190 0.91403 1.25060 1.01690 0.95155 0.97666 1.70021 1.50911 1.01920 1.31843 0.86311 0.78472 0.77156 0.84482 1.20762 1.21520 1.20965 1.21440 0.92594 0.92377 0.92203 1.23327 0.91527 0.91474 0.97513 1.87778 1.52689 1.56834 1.33592 0.91382 0.93452 0.91639 0.92337 0.91697 0.92021 0.87953 0.88233 0.76249 0.90821 0.90261 0.95221 0.91779 0.93410 0.88794 0.95357 0.90039 0.94115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.13 8.09 37.16 0.30 -0.83 16 2 C -0.10 -0.93 2.70 -154.47 -0.42 -1.34 16 3 C -0.12 -0.84 9.85 37.16 0.37 -0.48 16 4 C -0.15 -1.35 9.53 -26.69 -0.25 -1.60 16 5 C -0.19 -1.94 5.91 -91.77 -0.54 -2.48 16 6 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 7 C 0.54 7.37 7.59 -10.99 -0.08 7.29 16 8 O -0.54 -8.98 13.10 5.56 0.07 -8.91 16 9 N -0.72 -9.58 5.45 -60.30 -0.33 -9.91 16 10 C 0.13 2.00 5.37 -4.04 -0.02 1.97 16 11 C 0.06 1.13 2.86 -26.58 -0.08 1.05 16 12 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 13 C 0.12 2.54 6.02 -3.54 -0.02 2.52 16 14 N -0.59 -14.83 3.05 -171.83 -0.52 -15.35 16 15 C -0.26 -6.97 9.64 -15.06 -0.15 -7.11 16 16 H 0.07 1.79 7.88 -52.48 -0.41 1.37 16 17 C 0.00 0.09 4.95 -17.43 -0.09 0.00 16 18 N -0.90 -25.88 11.15 55.49 0.62 -25.26 16 19 Si 0.91 21.32 29.58 -169.99 -5.03 16.29 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 23 C 0.14 3.30 5.45 -3.53 -0.02 3.28 16 24 C 0.04 0.75 6.98 37.31 0.26 1.01 16 25 O -0.39 -7.23 10.14 -35.23 -0.36 -7.59 16 26 H 0.07 0.86 7.26 -51.93 -0.38 0.48 16 27 H 0.05 0.43 7.92 -51.93 -0.41 0.02 16 28 H 0.06 0.82 7.02 -51.93 -0.36 0.46 16 29 H 0.06 0.36 7.90 -51.93 -0.41 -0.05 16 30 H 0.06 0.42 7.92 -51.92 -0.41 0.01 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.10 0.73 8.05 -51.93 -0.42 0.31 16 33 H 0.10 1.01 8.05 -51.93 -0.42 0.59 16 34 H 0.40 4.76 8.36 -40.82 -0.34 4.42 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 1.27 7.96 -51.93 -0.41 0.86 16 39 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.09 2.43 6.15 -51.93 -0.32 2.11 16 41 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 43 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 344.82 15.07 5.20 5.20 Total: -1.00 -30.86 344.82 -8.33 -39.19 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -7.24 Total: 3.07 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -0.74 Total: 3.27 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: -0.23 Total: -50.52 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.28 Total: -16.50 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.86 -8.33 -39.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035339545.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.185 kcal (2) G-P(sol) polarization free energy of solvation -30.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds