Wall clock time and date at job start Tue Mar 31 2020 05:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 115.56270 * 2 1 4 4 C 1.52994 * 117.49896 * 214.31155 * 2 1 3 5 5 C 1.52999 * 117.49650 * 145.68717 * 2 1 3 6 6 H 1.08996 * 117.52055 * 0.02562 * 5 2 1 7 7 C 1.50702 * 117.50030 * 214.97825 * 5 2 1 8 8 O 1.21283 * 119.99817 * 359.97438 * 7 5 2 9 9 N 1.34767 * 120.00420 * 179.97438 * 7 5 2 10 10 C 1.46504 * 120.00226 * 180.02562 * 9 7 5 11 11 C 1.53006 * 109.47074 * 180.02562 * 10 9 7 12 12 H 1.08993 * 109.51322 * 60.10042 * 11 10 9 13 13 C 1.53713 * 109.44201 * 180.39093 * 11 10 9 14 14 N 1.47146 * 108.16061 * 172.37425 * 13 11 10 15 15 C 1.36938 * 120.98180 * 129.43157 * 14 13 11 16 16 H 1.07998 * 119.99988 * 333.27237 * 15 14 13 17 17 C 1.38810 * 120.00102 * 153.27600 * 15 14 13 18 18 N 1.31619 * 120.00280 * 334.83974 * 17 15 14 19 19 Si 1.86802 * 120.00187 * 154.83693 * 17 15 14 20 20 H 1.48502 * 109.47213 * 0.02562 * 19 17 15 21 21 H 1.48492 * 109.47319 * 240.00084 * 19 17 15 22 22 H 1.48502 * 109.47295 * 120.00141 * 19 17 15 23 23 C 1.47149 * 118.03844 * 309.15340 * 14 13 11 24 24 C 1.53295 * 108.38149 * 50.78750 * 23 14 13 25 25 O 1.42962 * 109.50942 * 300.00022 * 11 10 9 26 26 H 1.09003 * 109.47162 * 274.31177 * 1 2 3 27 27 H 1.09004 * 109.47191 * 34.31348 * 1 2 3 28 28 H 1.09000 * 109.47205 * 154.31062 * 1 2 3 29 29 H 1.08991 * 109.47146 * 205.68665 * 3 2 1 30 30 H 1.09003 * 109.47090 * 325.68948 * 3 2 1 31 31 H 1.09004 * 109.46907 * 85.68570 * 3 2 1 32 32 H 1.09000 * 117.49985 * 145.02712 * 4 2 1 33 33 H 1.09001 * 117.52135 * 359.97438 * 4 2 1 34 34 H 0.97005 * 120.00219 * 359.97438 * 9 7 5 35 35 H 1.08997 * 109.47025 * 60.00265 * 10 9 7 36 36 H 1.08993 * 109.47194 * 299.99703 * 10 9 7 37 37 H 1.08991 * 109.84059 * 52.68738 * 13 11 10 38 38 H 1.09005 * 109.74132 * 291.99973 * 13 11 10 39 39 H 0.97008 * 119.99588 * 354.23983 * 18 17 15 40 40 H 1.08996 * 109.68459 * 170.51104 * 23 14 13 41 41 H 1.08997 * 109.68153 * 291.07063 * 23 14 13 42 42 H 1.09002 * 109.51328 * 67.62676 * 24 23 14 43 43 H 1.09006 * 109.51202 * 187.77797 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2364 -1.1209 -0.7650 5 6 2.2364 -1.1210 0.7650 6 1 1.6115 -1.8588 1.2681 7 6 3.5292 -0.7812 1.4609 8 8 3.9720 0.3464 1.4008 9 7 4.1934 -1.7301 2.1499 10 6 5.4499 -1.3995 2.8268 11 6 5.9941 -2.6454 3.5287 12 1 6.1753 -3.4282 2.7922 13 6 7.3074 -2.2955 4.2468 14 7 7.7087 -3.4547 5.0595 15 6 8.9759 -3.9674 4.9788 16 1 9.5498 -3.8484 4.0717 17 6 9.5228 -4.6401 6.0629 18 7 9.0939 -4.3843 7.2807 19 14 10.8674 -5.9085 5.7935 20 1 11.1691 -6.0097 4.3429 21 1 10.4109 -7.2285 6.2978 22 1 12.0916 -5.4954 6.5255 23 6 6.7099 -4.0429 5.9661 24 6 5.4274 -4.3043 5.1682 25 8 5.0420 -3.1058 4.4905 26 1 -0.3634 0.0773 1.0248 27 1 -0.3634 0.8488 -0.5793 28 1 -0.3633 -0.9261 -0.4455 29 1 3.1823 1.3084 -0.4454 30 1 1.5812 2.0743 -0.5793 31 1 2.2772 1.7414 1.0248 32 1 3.1715 -0.8751 -1.2682 33 1 1.6115 -1.8589 -1.2681 34 1 3.8391 -2.6318 2.1983 35 1 5.2707 -0.6163 3.5633 36 1 6.1764 -1.0495 2.0936 37 1 7.1572 -1.4295 4.8914 38 1 8.0820 -2.0766 3.5117 39 1 8.4568 -3.6682 7.4301 40 1 7.0887 -4.9816 6.3701 41 1 6.5005 -3.3498 6.7808 42 1 5.6072 -5.0935 4.4382 43 1 4.6318 -4.6102 5.8477 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035343240.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:49 Heat of formation + Delta-G solvation = -42.085576 kcal Electronic energy + Delta-G solvation = -22522.635359 eV Core-core repulsion = 19183.143182 eV Total energy + Delta-G solvation = -3339.492177 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.29432 -38.78905 -37.33225 -35.06120 -34.42769 -31.70094 -30.73888 -29.61765 -27.66956 -27.60516 -25.63003 -23.68018 -23.37492 -21.72898 -20.56676 -19.77247 -19.16401 -17.57672 -17.12980 -16.18718 -15.84053 -15.19778 -15.01300 -14.45961 -14.38267 -14.26574 -13.87735 -13.75996 -13.68781 -13.48091 -13.09778 -12.75263 -12.69387 -12.41932 -12.15707 -11.97582 -11.79999 -11.41855 -11.18138 -10.79361 -10.62093 -10.61071 -10.40834 -10.19374 -10.05882 -10.05075 -9.56103 -9.51632 -9.21946 -8.97293 -8.44484 -6.99851 -6.16048 -3.33768 2.49315 3.13702 3.45837 3.48187 3.57652 3.61849 4.09131 4.42377 4.48036 4.51321 4.59945 4.87421 4.98090 5.01465 5.26127 5.34281 5.37296 5.39921 5.42871 5.46083 5.64748 5.69343 5.71175 5.77826 5.81222 5.87224 5.88197 5.99412 6.01497 6.09954 6.21487 6.28328 6.36397 6.52636 6.57462 6.75786 6.98107 7.57171 7.65022 7.87100 8.28199 8.45277 8.96988 9.72459 10.15172 11.12024 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.041331 B = 0.003053 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.290860 B = 9169.231538 C = 9315.108843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.095 4.095 3 C -0.103 4.103 4 C -0.148 4.148 5 C -0.188 4.188 6 H 0.121 0.879 7 C 0.540 3.460 8 O -0.541 6.541 9 N -0.717 5.717 10 C 0.132 3.868 11 C 0.065 3.935 12 H 0.060 0.940 13 C 0.124 3.876 14 N -0.601 5.601 15 C -0.353 4.353 16 H 0.060 0.940 17 C -0.024 4.024 18 N -0.915 5.915 19 Si 1.071 2.929 20 H -0.292 1.292 21 H -0.289 1.289 22 H -0.293 1.293 23 C 0.117 3.883 24 C 0.046 3.954 25 O -0.388 6.388 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.047 0.953 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.403 0.597 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.028 0.972 38 H 0.066 0.934 39 H 0.270 0.730 40 H 0.087 0.913 41 H 0.026 0.974 42 H 0.045 0.955 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.683 4.212 -13.661 21.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.095 4.095 3 C -0.160 4.160 4 C -0.185 4.185 5 C -0.209 4.209 6 H 0.139 0.861 7 C 0.326 3.674 8 O -0.419 6.419 9 N -0.367 5.367 10 C 0.008 3.992 11 C 0.005 3.995 12 H 0.078 0.922 13 C -0.003 4.003 14 N -0.326 5.326 15 C -0.482 4.482 16 H 0.078 0.922 17 C -0.226 4.226 18 N -0.555 5.555 19 Si 0.900 3.100 20 H -0.218 1.218 21 H -0.216 1.216 22 H -0.220 1.220 23 C -0.009 4.009 24 C -0.032 4.032 25 O -0.308 6.308 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.238 0.762 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.046 0.954 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.105 0.895 41 H 0.044 0.956 42 H 0.063 0.937 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -14.509 3.978 -12.893 19.813 hybrid contribution -0.795 0.384 -0.572 1.052 sum -15.304 4.362 -13.466 20.846 Atomic orbital electron populations 1.21400 0.91594 1.02134 1.02218 1.21579 0.94617 0.91920 1.01427 1.21351 0.99578 0.92370 1.02662 1.23211 1.02978 1.01403 0.90934 1.22372 0.97916 1.04941 0.95692 0.86069 1.19642 0.84554 0.84744 0.78459 1.90694 1.68650 1.20733 1.61785 1.45901 1.24685 1.13660 1.52480 1.21402 0.85150 0.97028 0.95652 1.22902 0.91118 0.94805 0.90667 0.92199 1.21524 0.93313 0.90776 0.94731 1.44165 1.09427 1.31065 1.47949 1.20033 0.91817 1.36870 0.99452 0.92222 1.25906 1.01955 1.02874 0.91861 1.70732 1.32459 1.31984 1.20305 0.83451 0.75520 0.76334 0.74648 1.21771 1.21569 1.21984 1.21614 0.87991 0.99270 0.91979 1.23161 0.98386 0.85966 0.95656 1.87790 1.44106 1.43582 1.55273 0.91959 0.91672 0.92324 0.91671 0.93408 0.91354 0.88286 0.87941 0.76237 0.90812 0.90236 0.95364 0.91583 0.91897 0.89500 0.95565 0.93665 0.89775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 9.85 37.16 0.37 -0.48 16 2 C -0.09 -0.91 2.70 -154.51 -0.42 -1.33 16 3 C -0.10 -1.13 8.09 37.16 0.30 -0.82 16 4 C -0.15 -1.30 9.52 -26.73 -0.25 -1.55 16 5 C -0.19 -1.93 5.91 -91.77 -0.54 -2.47 16 6 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 7 C 0.54 7.33 7.59 -10.99 -0.08 7.25 16 8 O -0.54 -8.94 13.10 5.55 0.07 -8.86 16 9 N -0.72 -9.52 5.45 -60.29 -0.33 -9.85 16 10 C 0.13 1.99 5.37 -4.04 -0.02 1.97 16 11 C 0.06 1.12 2.88 -26.36 -0.08 1.05 16 12 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 13 C 0.12 2.58 6.05 -3.32 -0.02 2.56 16 14 N -0.60 -14.95 2.91 -171.58 -0.50 -15.45 16 15 C -0.35 -9.71 9.54 -15.06 -0.14 -9.85 16 16 H 0.06 1.64 7.95 -52.49 -0.42 1.23 16 17 C -0.02 -0.66 4.71 -17.43 -0.08 -0.75 16 18 N -0.91 -27.08 12.44 55.49 0.69 -26.39 16 19 Si 1.07 24.85 29.99 -169.99 -5.10 19.75 16 20 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 C 0.12 2.71 4.88 -3.53 -0.02 2.69 16 24 C 0.05 0.86 6.98 37.31 0.26 1.12 16 25 O -0.39 -7.09 10.13 -35.23 -0.36 -7.45 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.42 7.92 -51.93 -0.41 0.01 16 28 H 0.06 0.36 7.90 -51.93 -0.41 -0.05 16 29 H 0.06 0.80 7.01 -51.93 -0.36 0.44 16 30 H 0.05 0.43 7.92 -51.93 -0.41 0.02 16 31 H 0.07 0.87 7.26 -51.93 -0.38 0.49 16 32 H 0.10 0.94 8.05 -51.93 -0.42 0.52 16 33 H 0.10 0.69 8.05 -51.93 -0.42 0.27 16 34 H 0.40 4.72 8.35 -40.82 -0.34 4.38 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 1.34 7.96 -51.93 -0.41 0.93 16 39 H 0.27 8.09 6.61 -40.82 -0.27 7.82 16 40 H 0.09 2.20 6.44 -51.93 -0.33 1.87 16 41 H 0.03 0.63 7.76 -51.93 -0.40 0.23 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 343.73 15.07 5.18 5.18 Total: -1.00 -31.58 343.73 -8.24 -39.82 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -7.17 Total: 3.85 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -0.73 Total: -0.61 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: -0.14 Total: -51.68 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.28 Total: -16.31 kcal Atomic # 14 Polarization: 24.85 SS G_CDS: -5.10 Total: 19.75 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.58 -8.24 -39.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035343240.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.268 kcal (2) G-P(sol) polarization free energy of solvation -31.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds