Wall clock time and date at job start Tue Mar 31 2020 05:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 115.56270 * 2 1 4 4 C 1.52994 * 117.49896 * 214.31155 * 2 1 3 5 5 C 1.52999 * 117.49650 * 145.68717 * 2 1 3 6 6 H 1.08996 * 117.52055 * 0.02562 * 5 2 1 7 7 C 1.50702 * 117.50030 * 214.97825 * 5 2 1 8 8 O 1.21283 * 119.99817 * 359.97438 * 7 5 2 9 9 N 1.34767 * 120.00420 * 179.97438 * 7 5 2 10 10 C 1.46504 * 120.00226 * 180.02562 * 9 7 5 11 11 C 1.53006 * 109.47074 * 180.02562 * 10 9 7 12 12 H 1.08993 * 109.51322 * 60.10042 * 11 10 9 13 13 C 1.53713 * 109.44201 * 180.39093 * 11 10 9 14 14 N 1.47146 * 108.16061 * 172.37425 * 13 11 10 15 15 C 1.36938 * 120.98180 * 129.43157 * 14 13 11 16 16 H 1.07998 * 119.99988 * 333.27237 * 15 14 13 17 17 C 1.38810 * 120.00102 * 153.27600 * 15 14 13 18 18 N 1.31619 * 120.00280 * 334.83974 * 17 15 14 19 19 Si 1.86802 * 120.00187 * 154.83693 * 17 15 14 20 20 H 1.48502 * 109.47213 * 0.02562 * 19 17 15 21 21 H 1.48492 * 109.47319 * 240.00084 * 19 17 15 22 22 H 1.48502 * 109.47295 * 120.00141 * 19 17 15 23 23 C 1.47149 * 118.03844 * 309.15340 * 14 13 11 24 24 C 1.53295 * 108.38149 * 50.78750 * 23 14 13 25 25 O 1.42962 * 109.50942 * 300.00022 * 11 10 9 26 26 H 1.09003 * 109.47162 * 274.31177 * 1 2 3 27 27 H 1.09004 * 109.47191 * 34.31348 * 1 2 3 28 28 H 1.09000 * 109.47205 * 154.31062 * 1 2 3 29 29 H 1.08991 * 109.47146 * 205.68665 * 3 2 1 30 30 H 1.09003 * 109.47090 * 325.68948 * 3 2 1 31 31 H 1.09004 * 109.46907 * 85.68570 * 3 2 1 32 32 H 1.09000 * 117.49985 * 145.02712 * 4 2 1 33 33 H 1.09001 * 117.52135 * 359.97438 * 4 2 1 34 34 H 0.97005 * 120.00219 * 359.97438 * 9 7 5 35 35 H 1.08997 * 109.47025 * 60.00265 * 10 9 7 36 36 H 1.08993 * 109.47194 * 299.99703 * 10 9 7 37 37 H 1.08991 * 109.84059 * 52.68738 * 13 11 10 38 38 H 1.09005 * 109.74132 * 291.99973 * 13 11 10 39 39 H 0.97008 * 119.99588 * 354.23983 * 18 17 15 40 40 H 1.08996 * 109.68459 * 170.51104 * 23 14 13 41 41 H 1.08997 * 109.68153 * 291.07063 * 23 14 13 42 42 H 1.09002 * 109.51328 * 67.62676 * 24 23 14 43 43 H 1.09006 * 109.51202 * 187.77797 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2364 -1.1209 -0.7650 5 6 2.2364 -1.1210 0.7650 6 1 1.6115 -1.8588 1.2681 7 6 3.5292 -0.7812 1.4609 8 8 3.9720 0.3464 1.4008 9 7 4.1934 -1.7301 2.1499 10 6 5.4499 -1.3995 2.8268 11 6 5.9941 -2.6454 3.5287 12 1 6.1753 -3.4282 2.7922 13 6 7.3074 -2.2955 4.2468 14 7 7.7087 -3.4547 5.0595 15 6 8.9759 -3.9674 4.9788 16 1 9.5498 -3.8484 4.0717 17 6 9.5228 -4.6401 6.0629 18 7 9.0939 -4.3843 7.2807 19 14 10.8674 -5.9085 5.7935 20 1 11.1691 -6.0097 4.3429 21 1 10.4109 -7.2285 6.2978 22 1 12.0916 -5.4954 6.5255 23 6 6.7099 -4.0429 5.9661 24 6 5.4274 -4.3043 5.1682 25 8 5.0420 -3.1058 4.4905 26 1 -0.3634 0.0773 1.0248 27 1 -0.3634 0.8488 -0.5793 28 1 -0.3633 -0.9261 -0.4455 29 1 3.1823 1.3084 -0.4454 30 1 1.5812 2.0743 -0.5793 31 1 2.2772 1.7414 1.0248 32 1 3.1715 -0.8751 -1.2682 33 1 1.6115 -1.8589 -1.2681 34 1 3.8391 -2.6318 2.1983 35 1 5.2707 -0.6163 3.5633 36 1 6.1764 -1.0495 2.0936 37 1 7.1572 -1.4295 4.8914 38 1 8.0820 -2.0766 3.5117 39 1 8.4568 -3.6682 7.4301 40 1 7.0887 -4.9816 6.3701 41 1 6.5005 -3.3498 6.7808 42 1 5.6072 -5.0935 4.4382 43 1 4.6318 -4.6102 5.8477 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035343240.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:48 Heat of formation + Delta-G solvation = -62.925487 kcal Electronic energy + Delta-G solvation = -22523.539045 eV Core-core repulsion = 19183.143182 eV Total energy + Delta-G solvation = -3340.395864 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.31249 -40.30577 -38.27932 -36.79443 -35.79126 -33.42334 -32.43693 -30.47127 -29.25502 -28.33008 -27.20138 -25.26671 -24.73311 -23.17067 -21.78844 -21.19731 -20.06192 -19.54539 -18.13980 -17.63121 -17.09669 -16.68852 -16.23054 -16.12288 -15.65470 -15.57559 -15.37282 -15.26673 -14.76413 -14.56286 -14.44571 -14.12370 -13.71585 -13.50086 -13.45793 -13.02776 -12.87239 -12.69003 -12.60912 -12.43657 -12.20813 -12.11822 -11.92632 -11.86028 -11.31091 -11.16440 -10.99646 -10.90135 -10.54262 -10.42110 -10.12585 -9.03656 -8.32309 -5.49773 1.49434 1.57757 1.65014 1.81549 2.07666 2.58191 2.65735 2.80180 3.13286 3.34104 3.64028 3.71357 3.85217 3.85995 3.94704 4.07788 4.18648 4.21118 4.28760 4.34320 4.48234 4.56503 4.61952 4.68780 4.72636 4.82806 4.84778 4.88839 4.97845 4.99691 5.07734 5.10075 5.11962 5.14249 5.29346 5.38649 5.55196 5.72841 6.13332 6.28776 6.54019 6.90240 7.23699 7.65135 8.08566 8.91785 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.041331 B = 0.003053 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.290860 B = 9169.231538 C = 9315.108843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.102 4.102 3 C -0.100 4.100 4 C -0.133 4.133 5 C -0.195 4.195 6 H 0.144 0.856 7 C 0.534 3.466 8 O -0.576 6.576 9 N -0.710 5.710 10 C 0.143 3.857 11 C 0.082 3.918 12 H 0.069 0.931 13 C 0.118 3.882 14 N -0.621 5.621 15 C -0.359 4.359 16 H 0.057 0.943 17 C -0.075 4.075 18 N -0.941 5.941 19 Si 1.122 2.878 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.292 1.292 23 C 0.120 3.880 24 C 0.059 3.941 25 O -0.386 6.386 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.044 0.956 30 H 0.065 0.935 31 H 0.043 0.957 32 H 0.088 0.912 33 H 0.132 0.868 34 H 0.414 0.586 35 H 0.059 0.941 36 H 0.084 0.916 37 H 0.017 0.983 38 H 0.068 0.932 39 H 0.254 0.746 40 H 0.060 0.940 41 H 0.006 0.994 42 H 0.055 0.945 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.398 3.003 -15.639 23.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.102 4.102 3 C -0.157 4.157 4 C -0.170 4.170 5 C -0.216 4.216 6 H 0.162 0.838 7 C 0.323 3.677 8 O -0.457 6.457 9 N -0.362 5.362 10 C 0.018 3.982 11 C 0.022 3.978 12 H 0.087 0.913 13 C -0.008 4.008 14 N -0.346 5.346 15 C -0.488 4.488 16 H 0.074 0.926 17 C -0.271 4.271 18 N -0.583 5.583 19 Si 0.946 3.054 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.219 1.219 23 C -0.006 4.006 24 C -0.018 4.018 25 O -0.305 6.305 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.106 0.894 33 H 0.150 0.850 34 H 0.250 0.750 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.035 0.965 38 H 0.087 0.913 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.024 0.976 42 H 0.073 0.927 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -16.263 2.770 -14.897 22.228 hybrid contribution -0.247 0.873 0.032 0.908 sum -16.511 3.643 -14.865 22.513 Atomic orbital electron populations 1.21404 0.89526 1.03480 1.02514 1.21708 0.96055 0.90920 1.01563 1.21269 0.99129 0.94133 1.01173 1.23307 1.02758 1.01242 0.89677 1.22413 0.96413 1.06165 0.96626 0.83812 1.20286 0.85394 0.84084 0.77976 1.90689 1.69771 1.22217 1.62979 1.45811 1.23940 1.14293 1.52132 1.21134 0.86309 0.95343 0.95407 1.22696 0.89154 0.95781 0.90155 0.91287 1.21677 0.95451 0.89316 0.94381 1.44434 1.09241 1.32441 1.48523 1.20294 0.92953 1.36473 0.99106 0.92559 1.27302 1.03886 1.04555 0.91361 1.70863 1.33582 1.32413 1.21417 0.82775 0.72917 0.74087 0.75636 1.19671 1.20983 1.21945 1.21549 0.89746 0.97259 0.92009 1.23056 0.96794 0.86207 0.95767 1.87809 1.43881 1.43533 1.55307 0.92109 0.90916 0.90519 0.93673 0.91625 0.93776 0.89353 0.85029 0.75012 0.92305 0.89746 0.96482 0.91345 0.93635 0.92176 0.97628 0.92708 0.86675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 9.85 71.98 0.71 -0.59 16 2 C -0.10 -1.74 2.70 -52.18 -0.14 -1.88 16 3 C -0.10 -2.15 8.09 71.98 0.58 -1.57 16 4 C -0.13 -1.95 9.52 30.59 0.29 -1.66 16 5 C -0.20 -3.55 5.91 -11.54 -0.07 -3.62 16 6 H 0.14 1.96 8.14 -2.39 -0.02 1.94 16 7 C 0.53 13.94 7.59 87.66 0.67 14.61 16 8 O -0.58 -19.16 13.10 -3.04 -0.04 -19.20 16 9 N -0.71 -17.73 5.45 -463.06 -2.52 -20.26 16 10 C 0.14 4.21 5.37 86.38 0.46 4.67 16 11 C 0.08 2.73 2.88 30.84 0.09 2.82 16 12 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 13 C 0.12 4.95 6.05 86.50 0.52 5.47 16 14 N -0.62 -31.21 2.91 -696.77 -2.03 -33.24 16 15 C -0.36 -19.92 9.54 84.03 0.80 -19.11 16 16 H 0.06 3.10 7.95 -2.91 -0.02 3.08 16 17 C -0.07 -4.20 4.71 84.86 0.40 -3.80 16 18 N -0.94 -57.03 12.44 21.65 0.27 -56.76 16 19 Si 1.12 50.06 29.99 68.60 2.06 52.12 16 20 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 21 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 22 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 23 C 0.12 5.62 4.88 86.35 0.42 6.04 16 24 C 0.06 2.11 6.98 72.08 0.50 2.61 16 25 O -0.39 -13.42 10.13 -148.98 -1.51 -14.93 16 26 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.07 0.74 7.92 -2.38 -0.02 0.72 16 28 H 0.08 0.63 7.90 -2.39 -0.02 0.61 16 29 H 0.04 1.12 7.01 -2.39 -0.02 1.11 16 30 H 0.06 1.12 7.92 -2.39 -0.02 1.10 16 31 H 0.04 1.14 7.26 -2.38 -0.02 1.13 16 32 H 0.09 1.51 8.05 -2.39 -0.02 1.49 16 33 H 0.13 1.20 8.05 -2.39 -0.02 1.18 16 34 H 0.41 8.63 8.35 -92.70 -0.77 7.85 16 35 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.07 2.79 7.96 -2.38 -0.02 2.77 16 39 H 0.25 15.80 6.61 -92.70 -0.61 15.19 16 40 H 0.06 3.12 6.44 -2.39 -0.02 3.10 16 41 H 0.01 0.29 7.76 -2.39 -0.02 0.27 16 42 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.12 3.40 8.14 -2.38 -0.02 3.38 16 Total: -1.00 -69.65 343.73 1.84 -67.81 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 0.37 Total: 20.45 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 5.24 Total: 4.00 kcal Atomic # 7 Polarization: -105.98 SS G_CDS: -4.28 Total: -110.26 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -1.55 Total: -34.13 kcal Atomic # 14 Polarization: 50.06 SS G_CDS: 2.06 Total: 52.12 kcal Total: -69.65 1.84 -67.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035343240.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.884 kcal (2) G-P(sol) polarization free energy of solvation -69.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds