Wall clock time and date at job start Tue Mar 31 2020 05:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46502 * 110.88557 * 2 1 4 4 C 1.34774 * 119.99924 * 300.69470 * 3 2 1 5 5 O 1.21281 * 119.99993 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00098 * 180.02562 * 4 3 2 7 7 H 1.09005 * 109.47643 * 55.02764 * 6 4 3 8 8 C 1.53087 * 109.48355 * 295.00260 * 6 4 3 9 9 C 1.53172 * 109.16852 * 182.40770 * 8 6 4 10 10 C 1.53178 * 109.03241 * 56.97956 * 9 8 6 11 11 C 1.53096 * 109.16616 * 303.01937 * 10 9 8 12 12 O 1.42901 * 109.41283 * 57.61142 * 11 10 9 13 13 C 1.55158 * 111.00066 * 123.87759 * 2 1 3 14 14 C 1.54321 * 102.94056 * 153.57608 * 13 2 1 15 15 N 1.47026 * 107.27151 * 337.80673 * 14 13 2 16 16 C 1.36937 * 125.64564 * 178.99815 * 15 14 13 17 17 H 1.08003 * 119.99674 * 179.97438 * 16 15 14 18 18 C 1.38806 * 120.00206 * 359.97207 * 16 15 14 19 19 N 1.31617 * 120.00127 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99927 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47219 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47091 * 120.00092 * 20 18 16 23 23 H 1.48503 * 109.47106 * 240.00260 * 20 18 16 24 24 C 1.47466 * 108.72200 * 358.97581 * 15 14 13 25 25 H 1.09001 * 109.47002 * 59.30011 * 1 2 3 26 26 H 1.08993 * 109.46955 * 179.30448 * 1 2 3 27 27 H 1.09000 * 109.47050 * 299.30277 * 1 2 3 28 28 H 0.96993 * 120.00210 * 120.70440 * 3 2 1 29 29 H 1.09004 * 109.51814 * 302.31627 * 8 6 4 30 30 H 1.09005 * 109.51976 * 62.43516 * 8 6 4 31 31 H 1.08999 * 109.54898 * 176.84803 * 9 8 6 32 32 H 1.08998 * 109.54249 * 297.11780 * 9 8 6 33 33 H 1.08997 * 109.52725 * 62.92879 * 10 9 8 34 34 H 1.09005 * 109.51882 * 183.11787 * 10 9 8 35 35 H 1.08995 * 109.47985 * 177.59321 * 11 10 9 36 36 H 1.08997 * 109.47923 * 297.62786 * 11 10 9 37 37 H 1.08999 * 110.71950 * 271.93743 * 13 2 1 38 38 H 1.08997 * 110.72317 * 35.21344 * 13 2 1 39 39 H 1.09007 * 109.88281 * 97.22434 * 14 13 2 40 40 H 1.09001 * 109.88127 * 218.38721 * 14 13 2 41 41 H 0.97008 * 119.99919 * 179.97438 * 19 18 16 42 42 H 1.08996 * 110.34770 * 265.25283 * 24 15 14 43 43 H 1.08994 * 110.40369 * 142.91800 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0523 1.3688 0.0000 4 6 1.7359 2.2107 -1.0037 5 8 1.0184 1.8354 -1.9066 6 6 2.2736 3.6185 -1.0040 7 1 3.3607 3.5924 -0.9277 8 6 1.6963 4.3859 0.1883 9 6 2.1997 5.8319 0.1471 10 6 1.8066 6.4597 -1.1937 11 6 2.3797 5.6123 -2.3327 12 8 1.8965 4.2724 -2.2175 13 6 2.0861 -0.8074 1.2026 14 6 3.4674 -1.2739 0.6966 15 7 3.4271 -1.2434 -0.7728 16 6 4.4639 -1.5678 -1.6064 17 1 4.3332 -1.5134 -2.6771 18 6 5.6828 -1.9666 -1.0754 19 7 5.8420 -2.0334 0.2294 20 14 7.0974 -2.4084 -2.2127 21 1 6.6645 -2.2529 -3.6246 22 1 8.2475 -1.5081 -1.9450 23 1 7.5044 -3.8162 -1.9725 24 6 2.0853 -0.8062 -1.2005 25 1 -0.3633 0.5247 -0.8837 26 1 -0.3633 -1.0275 -0.0125 27 1 -0.3633 0.5030 0.8962 28 1 2.6260 1.6690 0.7222 29 1 0.6077 4.3774 0.1342 30 1 2.0186 3.9133 1.1162 31 1 1.7482 6.3987 0.9614 32 1 3.2847 5.8434 0.2509 33 1 0.7202 6.4932 -1.2757 34 1 2.2088 7.4710 -1.2542 35 1 2.0672 6.0304 -3.2896 36 1 3.4681 5.6126 -2.2738 37 1 2.1921 -0.1691 2.0797 38 1 1.4468 -1.6626 1.4217 39 1 4.2426 -0.5993 1.0603 40 1 3.6649 -2.2890 1.0411 41 1 6.6937 -2.3124 0.6005 42 1 1.4519 -1.6699 -1.4029 43 1 2.1561 -0.1714 -2.0837 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046237486.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:52 Heat of formation + Delta-G solvation = -62.254784 kcal Electronic energy + Delta-G solvation = -23646.825440 eV Core-core repulsion = 20306.458660 eV Total energy + Delta-G solvation = -3340.366780 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.25250 -38.85476 -36.98556 -34.07521 -33.62262 -32.27934 -31.10268 -29.79294 -28.64556 -25.80471 -25.55279 -24.02368 -23.57889 -21.10101 -20.37825 -20.08983 -18.98138 -17.46272 -16.69176 -16.30987 -15.67137 -15.31232 -14.97323 -14.59307 -14.45745 -14.36246 -13.90482 -13.59496 -13.14975 -12.93422 -12.78865 -12.64336 -12.03291 -11.88243 -11.78067 -11.64542 -11.49096 -11.39202 -11.23254 -10.87905 -10.85944 -10.60444 -10.33825 -10.30069 -10.02166 -9.95013 -9.63543 -9.58584 -9.05528 -8.62424 -8.49205 -6.77156 -5.68542 -3.00062 2.96144 3.12163 3.41640 3.48021 3.50558 4.09943 4.53374 4.58237 4.62412 4.65479 4.80286 5.00516 5.03719 5.21039 5.30395 5.41416 5.42770 5.50775 5.53444 5.60177 5.64828 5.70648 5.75347 5.79835 5.84631 6.04582 6.06613 6.16353 6.19022 6.39286 6.42357 6.57182 6.72183 6.85321 7.06327 7.20263 7.57407 7.58631 7.82895 7.94728 8.28689 8.64514 9.26514 9.86403 10.52511 11.43674 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017547 B = 0.005155 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.333072 B = 5430.435600 C = 6217.588255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.159 3.841 3 N -0.699 5.699 4 C 0.524 3.476 5 O -0.520 6.520 6 C 0.074 3.926 7 H 0.083 0.917 8 C -0.144 4.144 9 C -0.121 4.121 10 C -0.158 4.158 11 C 0.058 3.942 12 O -0.353 6.353 13 C -0.146 4.146 14 C 0.177 3.823 15 N -0.603 5.603 16 C -0.219 4.219 17 H 0.077 0.923 18 C -0.011 4.011 19 N -0.925 5.925 20 Si 0.910 3.090 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.291 1.291 24 C 0.131 3.869 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.049 0.951 28 H 0.397 0.603 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.051 0.949 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.045 0.955 40 H 0.044 0.956 41 H 0.250 0.750 42 H 0.026 0.974 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.350 14.992 3.743 17.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.072 3.928 3 N -0.351 5.351 4 C 0.308 3.692 5 O -0.395 6.395 6 C 0.012 3.988 7 H 0.101 0.899 8 C -0.182 4.182 9 C -0.159 4.159 10 C -0.195 4.195 11 C -0.019 4.019 12 O -0.270 6.270 13 C -0.185 4.185 14 C 0.053 3.947 15 N -0.330 5.330 16 C -0.348 4.348 17 H 0.095 0.905 18 C -0.206 4.206 19 N -0.574 5.574 20 Si 0.741 3.259 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.218 1.218 24 C 0.004 3.996 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.231 0.769 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.114 0.886 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.043 0.957 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.764 14.539 2.937 17.229 hybrid contribution 1.403 0.055 0.082 1.406 sum -7.362 14.594 3.018 16.622 Atomic orbital electron populations 1.22012 0.94329 1.02171 1.02422 1.21480 0.92588 0.80553 0.98167 1.45690 1.51816 1.12189 1.25408 1.19900 0.81113 0.85944 0.82194 1.90658 1.36594 1.77102 1.35190 1.21922 0.99386 0.91134 0.86338 0.89934 1.22126 1.02221 0.96072 0.97787 1.21588 1.01348 0.95336 0.97597 1.22217 1.02232 0.99531 0.95551 1.22641 0.98000 0.82324 0.98910 1.88072 1.76086 1.25981 1.36898 1.23227 1.00501 0.98890 0.95856 1.21154 0.89967 0.99901 0.83723 1.44468 1.07865 1.78837 1.01798 1.19131 0.89354 1.37221 0.89071 0.90523 1.24751 0.97728 1.02121 0.96004 1.69960 1.24017 1.54268 1.09149 0.86062 0.82424 0.77704 0.79759 1.20526 1.21880 1.21805 1.21898 0.87554 0.94906 0.95216 0.90727 0.91873 0.93194 0.76902 0.90508 0.90229 0.91135 0.91455 0.90950 0.90849 0.88553 0.93025 0.91772 0.90846 0.93687 0.93829 0.93967 0.95659 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 8.57 37.16 0.32 -2.05 16 2 C 0.16 2.85 0.82 -129.67 -0.11 2.74 16 3 N -0.70 -11.53 5.14 -45.62 -0.23 -11.76 16 4 C 0.52 9.17 6.56 -10.99 -0.07 9.10 16 5 O -0.52 -11.01 13.32 -14.30 -0.19 -11.20 16 6 C 0.07 1.04 3.05 -27.84 -0.09 0.95 16 7 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 8 C -0.14 -1.52 5.37 -26.60 -0.14 -1.66 16 9 C -0.12 -1.03 6.03 -26.55 -0.16 -1.19 16 10 C -0.16 -1.36 6.14 -26.59 -0.16 -1.52 16 11 C 0.06 0.62 6.84 37.21 0.25 0.88 16 12 O -0.35 -5.42 9.94 -55.09 -0.55 -5.97 16 13 C -0.15 -2.59 5.98 -24.90 -0.15 -2.73 16 14 C 0.18 4.19 5.36 -3.06 -0.02 4.17 16 15 N -0.60 -15.64 3.40 -170.04 -0.58 -16.22 16 16 C -0.22 -6.28 10.28 -15.06 -0.15 -6.43 16 17 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 18 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 19 N -0.93 -27.06 10.31 55.49 0.57 -26.49 16 20 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 C 0.13 2.95 6.14 -2.51 -0.02 2.93 16 25 H 0.07 1.30 6.23 -51.93 -0.32 0.98 16 26 H 0.06 0.93 8.13 -51.93 -0.42 0.50 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.40 5.69 8.34 -40.82 -0.34 5.34 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 0.72 7.98 -51.93 -0.41 0.31 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.97 8.06 -51.93 -0.42 0.55 16 38 H 0.07 1.22 8.04 -51.93 -0.42 0.80 16 39 H 0.04 1.15 7.38 -51.93 -0.38 0.77 16 40 H 0.04 1.15 7.50 -51.93 -0.39 0.76 16 41 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.03 0.57 8.03 -51.93 -0.42 0.16 16 43 H 0.05 1.31 6.59 -51.93 -0.34 0.97 16 LS Contribution 335.31 15.07 5.05 5.05 Total: -1.00 -33.46 335.31 -8.76 -42.21 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -7.22 Total: 2.07 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -0.59 Total: 4.78 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: -0.24 Total: -54.47 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.74 Total: -17.16 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.46 -8.76 -42.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046237486.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.041 kcal (2) G-P(sol) polarization free energy of solvation -33.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds