Wall clock time and date at job start Tue Mar 31 2020 05:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 115.55826 * 2 1 4 4 C 1.52997 * 117.49694 * 214.30940 * 2 1 3 5 5 C 1.52999 * 117.49737 * 145.68783 * 2 1 3 6 6 H 1.08993 * 117.51898 * 214.97324 * 5 2 1 7 7 C 1.50700 * 117.49945 * 0.02562 * 5 2 1 8 8 O 1.21282 * 120.00042 * 0.02562 * 7 5 2 9 9 N 1.34773 * 119.99937 * 180.02562 * 7 5 2 10 10 C 1.46507 * 120.00090 * 179.97438 * 9 7 5 11 11 C 1.52997 * 109.47066 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.71002 * 59.94919 * 11 10 9 13 13 C 1.53305 * 109.67890 * 180.48006 * 11 10 9 14 14 O 1.43051 * 109.25032 * 172.03329 * 13 11 10 15 15 C 1.42970 * 114.10825 * 297.45715 * 14 13 11 16 16 C 1.53289 * 109.26352 * 62.55276 * 15 14 13 17 17 N 1.47148 * 108.38413 * 307.66876 * 16 15 14 18 18 C 1.36939 * 120.98546 * 230.55773 * 17 16 15 19 19 H 1.07999 * 120.00517 * 150.00103 * 18 17 16 20 20 C 1.38816 * 120.00001 * 329.99953 * 18 17 16 21 21 N 1.31620 * 119.99737 * 346.61504 * 20 18 17 22 22 Si 1.86798 * 120.00287 * 166.61645 * 20 18 17 23 23 H 1.48497 * 109.46820 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46735 * 119.99815 * 22 20 18 25 25 H 1.48494 * 109.47069 * 240.00051 * 22 20 18 26 26 H 1.08998 * 109.47228 * 274.31394 * 1 2 3 27 27 H 1.09001 * 109.46972 * 34.31278 * 1 2 3 28 28 H 1.09005 * 109.47172 * 154.31297 * 1 2 3 29 29 H 1.09004 * 109.46861 * 205.68810 * 3 2 1 30 30 H 1.08999 * 109.47721 * 325.68440 * 3 2 1 31 31 H 1.09001 * 109.47456 * 85.69324 * 3 2 1 32 32 H 1.08997 * 117.49632 * 145.02127 * 4 2 1 33 33 H 1.08998 * 117.52104 * 359.97438 * 4 2 1 34 34 H 0.97002 * 120.00162 * 359.97438 * 9 7 5 35 35 H 1.09006 * 109.46334 * 60.00062 * 10 9 7 36 36 H 1.08994 * 109.47430 * 300.00369 * 10 9 7 37 37 H 1.08993 * 109.51193 * 291.95017 * 13 11 10 38 38 H 1.08998 * 109.51058 * 52.10534 * 13 11 10 39 39 H 1.09002 * 109.51112 * 302.59823 * 15 14 13 40 40 H 1.09000 * 109.50777 * 182.50290 * 15 14 13 41 41 H 1.08998 * 109.68276 * 67.39667 * 16 15 14 42 42 H 1.09007 * 109.68034 * 187.91207 * 16 15 14 43 43 H 0.96997 * 119.99876 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3802 0.0000 4 6 2.2364 -1.1210 -0.7650 5 6 2.2364 -1.1210 0.7650 6 1 3.1715 -0.8756 1.2683 7 6 1.3720 -2.1409 1.4604 8 8 0.1638 -2.0541 1.4000 9 7 1.9415 -3.1496 2.1493 10 6 1.1011 -4.1408 2.8258 11 6 1.9902 -5.1693 3.5277 12 1 2.6220 -4.6691 4.2617 13 6 1.1155 -6.2160 4.2273 14 8 1.9460 -7.2710 4.7208 15 6 2.6467 -7.9879 3.7015 16 6 3.5997 -7.0321 2.9750 17 7 2.8318 -5.8564 2.5353 18 6 2.8982 -5.4149 1.2407 19 1 2.0483 -4.9197 0.7948 20 6 4.0579 -5.6037 0.5016 21 7 5.1720 -5.9604 1.1048 22 14 4.0374 -5.3516 -1.3492 23 1 2.6726 -4.9551 -1.7796 24 1 5.0011 -4.2822 -1.7137 25 1 4.4223 -6.6164 -2.0254 26 1 -0.3633 0.0773 1.0247 27 1 -0.3633 0.8488 -0.5793 28 1 -0.3634 -0.9261 -0.4455 29 1 3.1823 1.3084 -0.4455 30 1 1.5812 2.0743 -0.5793 31 1 2.2772 1.7414 1.0248 32 1 3.1715 -0.8752 -1.2682 33 1 1.6115 -1.8589 -1.2680 34 1 2.9078 -3.2192 2.1973 35 1 0.4722 -4.6451 2.0921 36 1 0.4715 -3.6415 3.5622 37 1 0.5859 -5.7509 5.0587 38 1 0.3951 -6.6218 3.5172 39 1 1.9318 -8.4003 2.9894 40 1 3.2185 -8.7982 4.1539 41 1 4.3936 -6.7194 3.6532 42 1 4.0328 -7.5332 2.1092 43 1 5.9823 -6.0928 0.5883 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050873526.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:53 Heat of formation + Delta-G solvation = -32.728173 kcal Electronic energy + Delta-G solvation = -23705.015371 eV Core-core repulsion = 20365.928961 eV Total energy + Delta-G solvation = -3339.086410 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.81705 -38.55666 -36.94091 -35.19694 -33.54528 -31.58977 -30.48262 -29.25032 -27.28738 -27.24304 -25.82562 -23.47611 -23.23416 -21.58347 -19.92540 -19.66804 -18.75688 -17.01694 -16.30054 -15.86341 -15.66277 -14.86058 -14.68062 -14.55658 -14.26225 -13.89199 -13.69076 -13.62074 -13.41108 -13.07374 -12.75054 -12.63050 -12.32674 -11.92471 -11.76779 -11.59762 -11.53928 -11.09349 -11.04387 -10.89421 -10.74662 -10.42417 -10.25642 -10.04669 -9.95178 -9.67139 -9.62733 -9.18004 -8.87448 -8.67252 -8.22844 -6.76123 -5.92150 -3.39904 3.04169 3.26368 3.36215 3.38790 3.69155 4.09606 4.33671 4.51932 4.86115 4.94478 5.06630 5.16328 5.22489 5.26017 5.50928 5.59488 5.70375 5.73201 5.73459 5.85086 5.93105 5.98788 6.01206 6.08961 6.13973 6.15032 6.15695 6.21903 6.26912 6.31292 6.33721 6.50827 6.70628 6.75739 7.04639 7.16468 7.45722 7.70280 7.84399 8.24975 8.29439 8.89199 9.04194 9.65185 10.23658 11.14611 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016470 B = 0.006403 C = 0.004969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.645961 B = 4371.829612 C = 5633.809794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.101 4.101 3 C -0.114 4.114 4 C -0.146 4.146 5 C -0.179 4.179 6 H 0.118 0.882 7 C 0.537 3.463 8 O -0.560 6.560 9 N -0.692 5.692 10 C 0.137 3.863 11 C 0.125 3.875 12 H 0.041 0.959 13 C 0.056 3.944 14 O -0.393 6.393 15 C 0.035 3.965 16 C 0.144 3.856 17 N -0.591 5.591 18 C -0.254 4.254 19 H 0.075 0.925 20 C 0.009 3.991 21 N -0.900 5.900 22 Si 0.895 3.105 23 H -0.276 1.276 24 H -0.288 1.288 25 H -0.289 1.289 26 H 0.066 0.934 27 H 0.042 0.958 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.415 0.585 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.083 0.917 38 H 0.047 0.953 39 H 0.041 0.959 40 H 0.079 0.921 41 H 0.029 0.971 42 H 0.091 0.909 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.277 7.230 0.826 8.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.102 4.102 3 C -0.171 4.171 4 C -0.184 4.184 5 C -0.200 4.200 6 H 0.136 0.864 7 C 0.324 3.676 8 O -0.440 6.440 9 N -0.342 5.342 10 C 0.012 3.988 11 C 0.018 3.982 12 H 0.058 0.942 13 C -0.023 4.023 14 O -0.311 6.311 15 C -0.043 4.043 16 C 0.018 3.982 17 N -0.317 5.317 18 C -0.383 4.383 19 H 0.093 0.907 20 C -0.191 4.191 21 N -0.544 5.544 22 Si 0.725 3.275 23 H -0.201 1.201 24 H -0.214 1.214 25 H -0.216 1.216 26 H 0.084 0.916 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.253 0.747 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.098 0.902 41 H 0.047 0.953 42 H 0.110 0.890 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.935 7.196 0.917 8.774 hybrid contribution 0.840 -0.116 -1.240 1.502 sum -4.095 7.079 -0.323 8.185 Atomic orbital electron populations 1.21305 0.90872 1.01015 1.02308 1.21551 0.95833 0.90379 1.02400 1.21371 0.99879 0.93991 1.01874 1.23167 1.02533 1.01102 0.91592 1.22309 1.01654 1.00287 0.95772 0.86365 1.19526 0.87851 0.81505 0.78762 1.90625 1.14602 1.76033 1.62746 1.45986 1.11685 1.25334 1.51229 1.21137 0.92955 0.89003 0.95656 1.21425 0.92688 0.91913 0.92207 0.94169 1.22882 0.92332 0.89049 0.98045 1.87824 1.62089 1.47490 1.33715 1.23344 0.95495 0.94943 0.90516 1.21401 0.91399 0.87140 0.98233 1.44110 1.52293 1.29024 1.06233 1.19298 0.96772 1.35296 0.86932 0.90703 1.25101 0.94906 1.00825 0.98261 1.70011 0.99318 1.50906 1.34116 0.86321 0.77756 0.77593 0.85856 1.20094 1.21439 1.21590 0.91553 0.93887 0.91708 0.92416 0.91978 0.92191 0.88217 0.88392 0.74695 0.91632 0.92433 0.89928 0.93498 0.94113 0.90237 0.95273 0.89047 0.93555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.42 8.09 37.16 0.30 -1.12 16 2 C -0.10 -1.40 2.70 -154.51 -0.42 -1.82 16 3 C -0.11 -1.24 9.85 37.15 0.37 -0.88 16 4 C -0.15 -2.20 9.52 -26.73 -0.25 -2.45 16 5 C -0.18 -2.82 5.91 -91.77 -0.54 -3.36 16 6 H 0.12 1.69 8.14 -51.93 -0.42 1.27 16 7 C 0.54 9.98 7.59 -10.99 -0.08 9.89 16 8 O -0.56 -11.43 13.10 5.56 0.07 -11.35 16 9 N -0.69 -13.08 3.75 -60.29 -0.23 -13.31 16 10 C 0.14 2.54 4.45 -4.04 -0.02 2.52 16 11 C 0.12 2.44 3.21 -67.42 -0.22 2.22 16 12 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 13 C 0.06 0.99 6.29 37.32 0.23 1.23 16 14 O -0.39 -7.64 10.75 -35.23 -0.38 -8.02 16 15 C 0.03 0.67 6.98 37.31 0.26 0.93 16 16 C 0.14 3.25 5.40 -3.54 -0.02 3.24 16 17 N -0.59 -13.53 3.03 -164.30 -0.50 -14.03 16 18 C -0.25 -6.24 7.10 -15.06 -0.11 -6.35 16 19 H 0.08 1.89 5.76 -52.49 -0.30 1.59 16 20 C 0.01 0.22 5.00 -17.43 -0.09 0.13 16 21 N -0.90 -24.12 11.20 55.49 0.62 -23.50 16 22 Si 0.90 20.66 29.57 -169.99 -5.03 15.64 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H 0.07 1.03 7.26 -51.93 -0.38 0.66 16 27 H 0.04 0.52 7.92 -51.93 -0.41 0.11 16 28 H 0.06 1.05 7.01 -51.93 -0.36 0.69 16 29 H 0.06 0.58 7.90 -51.93 -0.41 0.17 16 30 H 0.06 0.60 7.92 -51.93 -0.41 0.19 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.10 1.33 8.05 -51.93 -0.42 0.92 16 33 H 0.10 1.60 8.05 -51.93 -0.42 1.19 16 34 H 0.42 8.26 7.32 -40.82 -0.30 7.96 16 35 H 0.07 1.33 7.57 -51.93 -0.39 0.93 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 41 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.09 2.28 6.32 -51.92 -0.33 1.95 16 43 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 337.49 15.07 5.09 5.09 Total: -1.00 -28.04 337.49 -8.01 -36.04 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -7.07 Total: 9.25 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -0.58 Total: 4.19 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: -0.10 Total: -50.84 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.31 Total: -19.37 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.64 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.04 -8.01 -36.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050873526.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.317 kcal (2) G-P(sol) polarization free energy of solvation -28.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds