Wall clock time and date at job start Tue Mar 31 2020 05:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46951 * 2 1 4 4 O 1.42899 * 109.47347 * 239.99538 * 2 1 3 5 5 C 1.53008 * 109.47096 * 119.99970 * 2 1 3 6 6 C 1.50698 * 109.47234 * 63.76772 * 5 2 1 7 7 O 1.21285 * 120.00044 * 355.93925 * 6 5 2 8 8 N 1.34772 * 119.99836 * 175.93722 * 6 5 2 9 9 C 1.47886 * 134.34232 * 180.02562 * 8 6 5 10 10 C 1.52370 * 85.59260 * 156.47650 * 9 8 6 11 11 C 1.47892 * 134.34232 * 359.95415 * 8 6 5 12 12 C 1.53655 * 116.39462 * 141.34922 * 10 9 8 13 13 C 1.54600 * 102.73153 * 162.92033 * 12 10 9 14 14 N 1.47134 * 107.36447 * 339.24204 * 13 12 10 15 15 C 1.36936 * 125.58925 * 179.10590 * 14 13 12 16 16 H 1.07997 * 120.00512 * 174.94528 * 15 14 13 17 17 C 1.38814 * 119.99945 * 354.95339 * 15 14 13 18 18 N 1.31617 * 120.00050 * 5.24428 * 17 15 14 19 19 Si 1.86803 * 120.00246 * 185.24439 * 17 15 14 20 20 H 1.48494 * 109.47084 * 94.99721 * 19 17 15 21 21 H 1.48499 * 109.47197 * 214.99810 * 19 17 15 22 22 H 1.48502 * 109.47023 * 334.99932 * 19 17 15 23 23 C 1.47723 * 108.82703 * 359.07763 * 14 13 12 24 24 H 1.08998 * 109.47310 * 300.00092 * 1 2 3 25 25 H 1.08996 * 109.47092 * 60.00358 * 1 2 3 26 26 H 1.09002 * 109.46931 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47152 * 184.96957 * 3 2 1 28 28 H 1.09001 * 109.47188 * 304.96578 * 3 2 1 29 29 H 1.08991 * 109.47308 * 64.97023 * 3 2 1 30 30 H 0.96700 * 113.99663 * 60.00012 * 4 2 1 31 31 H 1.09001 * 109.46576 * 303.77207 * 5 2 1 32 32 H 1.09000 * 109.47004 * 183.77603 * 5 2 1 33 33 H 1.09005 * 113.85438 * 42.31158 * 9 8 6 34 34 H 1.08998 * 113.96986 * 270.66120 * 9 8 6 35 35 H 1.08999 * 113.85541 * 89.35627 * 11 8 6 36 36 H 1.09003 * 113.85066 * 317.68202 * 11 8 6 37 37 H 1.09001 * 110.76144 * 44.60681 * 12 10 9 38 38 H 1.09007 * 110.75841 * 281.22763 * 12 10 9 39 39 H 1.09005 * 109.86464 * 98.68998 * 13 12 10 40 40 H 1.08997 * 109.86955 * 219.65923 * 13 12 10 41 41 H 0.97000 * 120.00805 * 180.02562 * 18 17 15 42 42 H 1.09002 * 110.40378 * 141.24481 * 23 14 13 43 43 H 1.09000 * 110.40031 * 263.54137 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0401 -0.7213 1.2493 6 6 1.6154 -2.1665 1.2035 7 8 0.9068 -2.5621 0.3022 8 7 2.0231 -3.0193 2.1642 9 6 1.8073 -4.4583 2.4284 10 6 3.1044 -4.3862 3.2247 11 6 2.8653 -2.8888 3.3728 12 6 3.1533 -5.2022 4.5258 13 6 4.6683 -5.2753 4.8253 14 7 5.3785 -5.0154 3.5632 15 6 6.7384 -4.9743 3.4079 16 1 7.1662 -4.8566 2.4232 17 6 7.5672 -5.0842 4.5160 18 7 7.0516 -5.3310 5.7015 19 14 9.4143 -4.8818 4.3246 20 1 9.7919 -3.4771 4.6238 21 1 10.1124 -5.7933 5.2664 22 1 9.8070 -5.2139 2.9315 23 6 4.3841 -4.8068 2.4909 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1264 1.4439 -0.0890 28 1 1.6058 1.9814 -0.8422 29 1 1.7512 1.9300 0.9311 30 1 1.7211 -0.2702 -1.9979 31 1 1.6225 -0.2479 2.1379 32 1 3.1280 -0.6630 1.2838 33 1 1.8708 -5.0843 1.5382 34 1 0.9278 -4.6699 3.0365 35 1 2.3094 -2.6178 4.2704 36 1 3.7592 -2.2830 3.2239 37 1 2.7413 -6.1995 4.3721 38 1 2.6257 -4.6842 5.3268 39 1 4.9367 -4.5198 5.5638 40 1 4.9245 -6.2664 5.1996 41 1 7.6306 -5.4074 6.4760 42 1 4.7127 -4.0159 1.8165 43 1 4.2209 -5.7323 1.9387 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072675972.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:07 Heat of formation + Delta-G solvation = -25.168733 kcal Electronic energy + Delta-G solvation = -23111.698655 eV Core-core repulsion = 19772.940047 eV Total energy + Delta-G solvation = -3338.758608 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.52013 -39.01986 -37.15849 -35.48917 -32.77108 -32.19504 -29.98966 -28.93344 -27.56202 -27.36892 -26.08080 -25.54241 -23.51450 -20.75492 -20.24815 -19.10296 -18.20007 -17.09944 -16.73687 -16.45965 -15.84964 -15.34681 -14.92099 -14.66618 -14.42361 -13.86036 -13.71876 -13.67287 -13.41823 -12.80272 -12.47311 -12.35135 -12.26546 -11.92821 -11.87810 -11.81446 -11.76322 -11.49547 -11.05418 -10.92794 -10.90523 -10.75598 -10.35381 -10.18438 -10.07610 -9.99283 -9.85862 -9.65896 -9.21609 -8.58694 -8.40934 -6.83537 -5.72667 -3.05350 2.90037 3.00727 3.39916 3.45798 3.47432 4.11576 4.43966 4.52162 4.59189 4.74612 4.86610 5.00051 5.07660 5.25624 5.32110 5.39488 5.45572 5.50122 5.55900 5.63521 5.68638 5.72026 5.78180 5.78279 5.85586 5.89184 5.91024 6.09570 6.20108 6.24433 6.33495 6.49178 6.55147 6.71130 6.75044 7.54788 7.61855 7.68333 7.82098 7.97034 8.24812 8.43824 9.21638 9.81382 10.47601 11.39138 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021979 B = 0.004133 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.608946 B = 6773.410575 C = 7539.908847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.143 3.857 3 C -0.179 4.179 4 O -0.545 6.545 5 C -0.125 4.125 6 C 0.539 3.461 7 O -0.533 6.533 8 N -0.644 5.644 9 C 0.122 3.878 10 C -0.103 4.103 11 C 0.121 3.879 12 C -0.132 4.132 13 C 0.178 3.822 14 N -0.605 5.605 15 C -0.228 4.228 16 H 0.077 0.923 17 C -0.006 4.006 18 N -0.921 5.921 19 Si 0.910 3.090 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.162 3.838 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.089 0.911 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.371 0.629 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.050 0.950 40 H 0.040 0.960 41 H 0.252 0.748 42 H 0.040 0.960 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.994 10.581 -5.904 17.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.102 3.898 3 C -0.237 4.237 4 O -0.350 6.350 5 C -0.165 4.165 6 C 0.328 3.672 7 O -0.410 6.410 8 N -0.380 5.380 9 C -0.001 4.001 10 C -0.105 4.105 11 C -0.002 4.002 12 C -0.170 4.170 13 C 0.053 3.947 14 N -0.332 5.332 15 C -0.356 4.356 16 H 0.095 0.905 17 C -0.203 4.203 18 N -0.568 5.568 19 Si 0.740 3.260 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.206 1.206 23 C 0.036 3.964 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.108 0.892 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.217 0.783 31 H 0.119 0.881 32 H 0.116 0.884 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -12.961 10.108 -5.961 17.484 hybrid contribution 0.777 0.584 -0.273 1.010 sum -12.185 10.692 -6.233 17.368 Atomic orbital electron populations 1.22684 0.95512 1.04831 1.01397 1.20817 0.93046 0.90115 0.85816 1.22529 1.02326 0.96256 1.02597 1.86681 1.76438 1.56807 1.15052 1.21672 1.03710 0.93006 0.98137 1.20051 0.79364 0.86918 0.80822 1.90625 1.37696 1.78094 1.34557 1.50265 1.51639 1.11033 1.25097 1.22939 0.97146 0.81323 0.98675 1.22446 0.95562 0.94767 0.97726 1.23031 0.93517 0.97196 0.86426 1.22672 1.00867 0.98670 0.94838 1.21210 0.84390 1.00500 0.88577 1.44567 1.01178 1.83698 1.03735 1.19064 0.79969 1.43163 0.93393 0.90486 1.24793 0.98053 1.01996 0.95415 1.69964 1.33357 1.55005 0.98524 0.86129 0.85155 0.77521 0.77175 1.21649 1.21765 1.20643 1.21038 0.86770 0.97282 0.91333 0.92531 0.92844 0.89190 0.91584 0.92146 0.91565 0.78279 0.88071 0.88430 0.90234 0.90038 0.89840 0.89620 0.91786 0.91784 0.93193 0.94196 0.93790 0.94168 0.95823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.99 8.54 37.16 0.32 -1.67 16 2 C 0.14 1.60 0.98 -90.61 -0.09 1.51 16 3 C -0.18 -1.51 8.82 37.16 0.33 -1.19 16 4 O -0.54 -7.17 11.72 -54.47 -0.64 -7.80 16 5 C -0.13 -1.53 4.71 -27.88 -0.13 -1.66 16 6 C 0.54 8.47 7.63 -10.99 -0.08 8.39 16 7 O -0.53 -9.88 13.75 -13.68 -0.19 -10.07 16 8 N -0.64 -9.78 3.62 -186.91 -0.68 -10.45 16 9 C 0.12 1.79 8.21 -3.60 -0.03 1.76 16 10 C -0.10 -1.70 0.99 -154.86 -0.15 -1.85 16 11 C 0.12 1.76 7.92 -3.60 -0.03 1.73 16 12 C -0.13 -2.24 6.36 -25.55 -0.16 -2.41 16 13 C 0.18 4.11 5.40 -2.86 -0.02 4.09 16 14 N -0.61 -15.05 3.41 -170.50 -0.58 -15.63 16 15 C -0.23 -6.27 10.27 -15.06 -0.15 -6.42 16 16 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 17 C -0.01 -0.18 5.48 -17.43 -0.10 -0.27 16 18 N -0.92 -26.47 10.33 55.49 0.57 -25.89 16 19 Si 0.91 21.88 29.56 -169.99 -5.02 16.86 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 C 0.16 3.32 6.63 -3.17 -0.02 3.30 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.09 1.24 5.70 -51.93 -0.30 0.94 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.37 3.33 9.05 45.56 0.41 3.74 16 31 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.08 1.22 8.12 -51.93 -0.42 0.80 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.08 1.04 8.04 -51.93 -0.42 0.62 16 36 H 0.09 1.32 8.12 -51.93 -0.42 0.89 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.06 0.95 7.99 -51.92 -0.41 0.54 16 39 H 0.05 1.27 7.25 -51.93 -0.38 0.89 16 40 H 0.04 1.03 7.63 -51.93 -0.40 0.64 16 41 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 343.17 15.07 5.17 5.17 Total: -1.00 -32.87 343.17 -8.21 -41.07 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -6.53 Total: 1.45 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -0.32 Total: 5.31 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: -0.68 Total: -51.98 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.83 Total: -17.87 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.87 -8.21 -41.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072675972.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.904 kcal (2) G-P(sol) polarization free energy of solvation -32.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds