Wall clock time and date at job start Tue Mar 31 2020 05:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 109.47084 * 2 1 4 4 C 1.32998 * 119.99877 * 233.79190 * 3 2 1 5 5 C 1.50698 * 120.00042 * 353.15186 * 4 3 2 6 6 C 1.47097 * 119.99854 * 173.16256 * 4 3 2 7 7 O 1.21615 * 120.00311 * 359.97438 * 6 4 3 8 8 N 1.34781 * 120.00025 * 179.97438 * 6 4 3 9 9 C 1.46502 * 119.99768 * 179.97438 * 8 6 4 10 10 H 1.08998 * 109.46057 * 35.00374 * 9 8 6 11 11 C 1.53040 * 109.45988 * 275.02391 * 9 8 6 12 12 C 1.53188 * 109.30995 * 178.61998 * 11 9 8 13 13 N 1.46923 * 108.78035 * 54.63593 * 12 11 9 14 14 C 1.36938 * 120.63409 * 126.36551 * 13 12 11 15 15 H 1.07996 * 119.99742 * 326.53023 * 14 13 12 16 16 C 1.38811 * 119.99814 * 146.52344 * 14 13 12 17 17 N 1.31616 * 120.00168 * 348.21510 * 16 14 13 18 18 Si 1.86799 * 119.99790 * 168.21911 * 16 14 13 19 19 H 1.48502 * 109.47392 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47148 * 119.99967 * 18 16 14 21 21 H 1.48502 * 109.47164 * 239.99742 * 18 16 14 22 22 C 1.46930 * 118.73461 * 306.39180 * 13 12 11 23 23 C 1.53043 * 109.45582 * 154.96972 * 9 8 6 24 24 H 1.08998 * 109.50175 * 301.33793 * 23 9 8 25 25 O 1.42901 * 109.49819 * 61.43519 * 23 9 8 26 26 H 1.08997 * 109.47178 * 300.00048 * 1 2 3 27 27 H 1.08995 * 109.47401 * 60.00032 * 1 2 3 28 28 H 1.08998 * 109.46728 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47421 * 119.99658 * 2 1 3 30 30 H 1.09002 * 109.47605 * 240.00106 * 2 1 3 31 31 H 1.07998 * 120.00118 * 53.78447 * 3 2 1 32 32 H 1.09006 * 109.46984 * 84.77652 * 5 4 3 33 33 H 1.08998 * 109.47304 * 204.77098 * 5 4 3 34 34 H 1.08997 * 109.47444 * 324.77745 * 5 4 3 35 35 H 0.96996 * 119.99878 * 359.97438 * 8 6 4 36 36 H 1.09006 * 109.49495 * 298.56665 * 11 9 8 37 37 H 1.08998 * 109.49667 * 58.63056 * 11 9 8 38 38 H 1.09002 * 109.58309 * 174.42449 * 12 11 9 39 39 H 1.08997 * 109.58554 * 294.83975 * 12 11 9 40 40 H 0.97002 * 119.99916 * 179.97438 * 17 16 14 41 41 H 1.09007 * 109.58266 * 173.39612 * 22 13 12 42 42 H 1.09004 * 109.58431 * 293.81693 * 22 13 12 43 43 H 0.96695 * 114.00607 * 179.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.8955 1.8210 -0.9294 5 6 3.4896 0.8203 -1.8867 6 6 3.2703 3.2404 -1.0226 7 8 2.7906 4.0480 -0.2502 8 7 4.1454 3.6458 -1.9641 9 6 4.5183 5.0595 -2.0573 10 1 4.5491 5.4936 -1.0579 11 6 3.4848 5.8046 -2.9052 12 6 3.8591 7.2885 -2.9718 13 7 5.2394 7.4067 -3.4612 14 6 5.5322 8.1992 -4.5389 15 1 4.8169 8.3056 -5.3410 16 6 6.7482 8.8658 -4.6002 17 7 7.5188 8.9284 -3.5351 18 14 7.2908 9.6742 -6.1944 19 1 6.2529 9.4624 -7.2351 20 1 7.4782 11.1305 -5.9722 21 1 8.5724 9.0730 -6.6431 22 6 6.2995 6.6579 -2.7726 23 6 5.8979 5.1810 -2.7086 24 1 6.6293 4.6305 -2.1169 25 8 5.8501 4.6417 -4.0310 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.6913 2.1142 0.7546 32 1 2.8098 0.6723 -2.7259 33 1 4.4455 1.1929 -2.2550 34 1 3.6433 -0.1281 -1.3720 35 1 4.5283 3.0016 -2.5799 36 1 3.4714 5.3872 -3.9121 37 1 2.4985 5.6974 -2.4539 38 1 3.1840 7.8053 -3.6540 39 1 3.7849 7.7290 -1.9776 40 1 8.3687 9.3939 -3.5780 41 1 7.2348 6.7587 -3.3234 42 1 6.4244 7.0470 -1.7621 43 1 6.6920 4.6860 -4.5046 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099718708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:44 Heat of formation + Delta-G solvation = -61.767292 kcal Electronic energy + Delta-G solvation = -22910.166029 eV Core-core repulsion = 19569.820388 eV Total energy + Delta-G solvation = -3340.345640 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.87968 -38.05175 -36.15104 -34.77537 -34.29466 -32.41622 -31.58817 -29.32684 -29.00796 -27.10569 -25.41017 -24.07471 -22.40873 -21.90779 -20.64231 -19.54439 -18.32635 -17.31857 -16.92284 -16.10942 -15.52594 -15.12274 -14.84815 -14.68636 -14.21954 -14.01582 -13.77500 -13.69410 -13.28773 -13.16708 -12.76340 -12.67541 -12.38492 -12.14833 -11.97494 -11.87152 -11.51810 -11.23733 -11.13213 -11.07190 -10.82619 -10.55950 -10.47852 -10.17041 -10.01242 -9.77816 -9.55608 -9.16527 -9.12031 -8.61789 -8.50018 -6.59057 -5.81636 -3.29068 1.36158 3.34072 3.39122 3.43036 3.45756 3.50997 4.46933 4.60045 4.74069 4.84662 4.89541 4.99347 5.04830 5.28465 5.34409 5.38705 5.43460 5.48407 5.50940 5.60927 5.61891 5.73935 5.77184 5.91602 5.98599 6.06478 6.24626 6.32304 6.35412 6.42192 6.52221 6.60126 6.83211 6.91271 7.02029 7.18375 7.42288 7.79033 7.84187 8.25044 8.47006 8.48981 9.19298 9.80190 10.40670 11.27042 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.041785 B = 0.003484 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.940981 B = 8034.704616 C = 8202.392138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.106 4.106 3 C -0.079 4.079 4 C -0.183 4.183 5 C -0.117 4.117 6 C 0.547 3.453 7 O -0.550 6.550 8 N -0.714 5.714 9 C 0.162 3.838 10 H 0.090 0.910 11 C -0.136 4.136 12 C 0.148 3.852 13 N -0.582 5.582 14 C -0.245 4.245 15 H 0.063 0.937 16 C 0.003 3.997 17 N -0.907 5.907 18 Si 0.904 3.096 19 H -0.277 1.277 20 H -0.290 1.290 21 H -0.290 1.290 22 C 0.149 3.851 23 C 0.073 3.927 24 H 0.043 0.957 25 O -0.560 6.560 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.126 0.874 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.401 0.599 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.057 0.943 39 H 0.019 0.981 40 H 0.253 0.747 41 H 0.090 0.910 42 H 0.028 0.972 43 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.953 -18.142 4.290 19.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.143 4.143 3 C -0.099 4.099 4 C -0.186 4.186 5 C -0.174 4.174 6 C 0.334 3.666 7 O -0.429 6.429 8 N -0.364 5.364 9 C 0.058 3.942 10 H 0.108 0.892 11 C -0.176 4.176 12 C 0.021 3.979 13 N -0.305 5.305 14 C -0.375 4.375 15 H 0.081 0.919 16 C -0.195 4.195 17 N -0.551 5.551 18 Si 0.734 3.266 19 H -0.202 1.202 20 H -0.217 1.217 21 H -0.216 1.216 22 C 0.022 3.978 23 C 0.011 3.989 24 H 0.060 0.940 25 O -0.365 6.365 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.143 0.857 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.237 0.763 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.037 0.963 40 H 0.063 0.937 41 H 0.108 0.892 42 H 0.046 0.954 43 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -7.744 -17.547 4.989 19.818 hybrid contribution 1.226 0.337 -1.164 1.723 sum -6.518 -17.210 3.825 18.797 Atomic orbital electron populations 1.21689 0.94494 1.01807 1.02459 1.20825 0.96545 0.93812 1.03103 1.23543 0.93167 0.97263 0.95929 1.21525 1.02301 0.93865 1.00897 1.20829 1.00685 0.97615 0.98293 1.18408 0.79122 0.88309 0.80718 1.90772 1.54257 1.55179 1.42742 1.46178 1.45088 1.10703 1.34422 1.21005 0.93887 0.79885 0.99432 0.89225 1.22299 0.96939 0.98377 0.99985 1.20906 0.87834 0.92022 0.97093 1.43817 1.01258 1.51046 1.34347 1.19187 1.02121 1.20151 0.96051 0.91886 1.25199 0.99437 0.97895 0.96998 1.69987 1.12639 1.45605 1.26896 0.86198 0.78279 0.78928 0.83213 1.20209 1.21694 1.21637 1.21382 0.93973 0.85456 0.97017 1.22852 0.94657 0.98047 0.83309 0.93965 1.86347 1.38459 1.83787 1.27940 0.92363 0.92399 0.92299 0.90456 0.90545 0.85666 0.91041 0.91572 0.91021 0.76292 0.91293 0.92952 0.92463 0.96259 0.93666 0.89176 0.95360 0.77878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.89 37.16 0.37 -0.67 16 2 C -0.11 -0.81 5.99 -27.88 -0.17 -0.97 16 3 C -0.08 -0.86 9.08 -36.12 -0.33 -1.19 16 4 C -0.18 -2.22 5.99 -102.85 -0.62 -2.83 16 5 C -0.12 -1.05 8.60 36.00 0.31 -0.74 16 6 C 0.55 8.81 7.71 -12.66 -0.10 8.71 16 7 O -0.55 -10.86 15.89 5.26 0.08 -10.77 16 8 N -0.71 -11.18 5.00 -54.95 -0.27 -11.45 16 9 C 0.16 2.98 2.20 -67.89 -0.15 2.84 16 10 H 0.09 1.81 7.57 -51.93 -0.39 1.41 16 11 C -0.14 -2.67 5.51 -26.61 -0.15 -2.82 16 12 C 0.15 3.30 6.52 -3.71 -0.02 3.27 16 13 N -0.58 -14.53 2.91 -172.32 -0.50 -15.03 16 14 C -0.25 -6.67 9.55 -15.06 -0.14 -6.82 16 15 H 0.06 1.72 7.86 -52.49 -0.41 1.31 16 16 C 0.00 0.08 5.00 -17.43 -0.09 0.00 16 17 N -0.91 -25.79 11.29 55.49 0.63 -25.17 16 18 Si 0.90 21.42 29.57 -169.99 -5.03 16.40 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 C 0.15 3.42 4.89 -3.71 -0.02 3.40 16 23 C 0.07 1.34 3.38 -26.61 -0.09 1.25 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 25 O -0.56 -9.92 12.08 -35.23 -0.43 -10.34 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.52 5.86 -51.93 -0.30 0.21 16 31 H 0.13 1.52 7.51 -52.49 -0.39 1.13 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.58 6.45 -51.93 -0.34 0.25 16 34 H 0.07 0.51 6.79 -51.93 -0.35 0.16 16 35 H 0.40 5.51 6.25 -40.82 -0.25 5.26 16 36 H 0.07 1.41 7.61 -51.93 -0.40 1.02 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.06 1.25 7.93 -51.93 -0.41 0.84 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.09 2.25 6.32 -51.93 -0.33 1.92 16 42 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.37 5.70 9.08 45.56 0.41 6.11 16 LS Contribution 343.20 15.07 5.17 5.17 Total: -1.00 -31.62 343.20 -7.65 -39.26 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -6.11 Total: 8.51 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -1.19 Total: 3.42 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: -0.15 Total: -51.65 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.34 Total: -21.12 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.62 -7.65 -39.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099718708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.505 kcal (2) G-P(sol) polarization free energy of solvation -31.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds