Wall clock time and date at job start Tue Mar 31 2020 05:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 109.47084 * 2 1 4 4 C 1.32998 * 119.99877 * 233.79190 * 3 2 1 5 5 C 1.50698 * 120.00042 * 353.15186 * 4 3 2 6 6 C 1.47097 * 119.99854 * 173.16256 * 4 3 2 7 7 O 1.21615 * 120.00311 * 359.97438 * 6 4 3 8 8 N 1.34781 * 120.00025 * 179.97438 * 6 4 3 9 9 C 1.46502 * 119.99768 * 179.97438 * 8 6 4 10 10 H 1.08998 * 109.46057 * 35.00374 * 9 8 6 11 11 C 1.53040 * 109.45988 * 275.02391 * 9 8 6 12 12 C 1.53188 * 109.30995 * 178.61998 * 11 9 8 13 13 N 1.46923 * 108.78035 * 54.63593 * 12 11 9 14 14 C 1.36938 * 120.63409 * 126.36551 * 13 12 11 15 15 H 1.07996 * 119.99742 * 326.53023 * 14 13 12 16 16 C 1.38811 * 119.99814 * 146.52344 * 14 13 12 17 17 N 1.31616 * 120.00168 * 348.21510 * 16 14 13 18 18 Si 1.86799 * 119.99790 * 168.21911 * 16 14 13 19 19 H 1.48502 * 109.47392 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47148 * 119.99967 * 18 16 14 21 21 H 1.48502 * 109.47164 * 239.99742 * 18 16 14 22 22 C 1.46930 * 118.73461 * 306.39180 * 13 12 11 23 23 C 1.53043 * 109.45582 * 154.96972 * 9 8 6 24 24 H 1.08998 * 109.50175 * 301.33793 * 23 9 8 25 25 O 1.42901 * 109.49819 * 61.43519 * 23 9 8 26 26 H 1.08997 * 109.47178 * 300.00048 * 1 2 3 27 27 H 1.08995 * 109.47401 * 60.00032 * 1 2 3 28 28 H 1.08998 * 109.46728 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47421 * 119.99658 * 2 1 3 30 30 H 1.09002 * 109.47605 * 240.00106 * 2 1 3 31 31 H 1.07998 * 120.00118 * 53.78447 * 3 2 1 32 32 H 1.09006 * 109.46984 * 84.77652 * 5 4 3 33 33 H 1.08998 * 109.47304 * 204.77098 * 5 4 3 34 34 H 1.08997 * 109.47444 * 324.77745 * 5 4 3 35 35 H 0.96996 * 119.99878 * 359.97438 * 8 6 4 36 36 H 1.09006 * 109.49495 * 298.56665 * 11 9 8 37 37 H 1.08998 * 109.49667 * 58.63056 * 11 9 8 38 38 H 1.09002 * 109.58309 * 174.42449 * 12 11 9 39 39 H 1.08997 * 109.58554 * 294.83975 * 12 11 9 40 40 H 0.97002 * 119.99916 * 179.97438 * 17 16 14 41 41 H 1.09007 * 109.58266 * 173.39612 * 22 13 12 42 42 H 1.09004 * 109.58431 * 293.81693 * 22 13 12 43 43 H 0.96695 * 114.00607 * 179.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.8955 1.8210 -0.9294 5 6 3.4896 0.8203 -1.8867 6 6 3.2703 3.2404 -1.0226 7 8 2.7906 4.0480 -0.2502 8 7 4.1454 3.6458 -1.9641 9 6 4.5183 5.0595 -2.0573 10 1 4.5491 5.4936 -1.0579 11 6 3.4848 5.8046 -2.9052 12 6 3.8591 7.2885 -2.9718 13 7 5.2394 7.4067 -3.4612 14 6 5.5322 8.1992 -4.5389 15 1 4.8169 8.3056 -5.3410 16 6 6.7482 8.8658 -4.6002 17 7 7.5188 8.9284 -3.5351 18 14 7.2908 9.6742 -6.1944 19 1 6.2529 9.4624 -7.2351 20 1 7.4782 11.1305 -5.9722 21 1 8.5724 9.0730 -6.6431 22 6 6.2995 6.6579 -2.7726 23 6 5.8979 5.1810 -2.7086 24 1 6.6293 4.6305 -2.1169 25 8 5.8501 4.6417 -4.0310 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.6913 2.1142 0.7546 32 1 2.8098 0.6723 -2.7259 33 1 4.4455 1.1929 -2.2550 34 1 3.6433 -0.1281 -1.3720 35 1 4.5283 3.0016 -2.5799 36 1 3.4714 5.3872 -3.9121 37 1 2.4985 5.6974 -2.4539 38 1 3.1840 7.8053 -3.6540 39 1 3.7849 7.7290 -1.9776 40 1 8.3687 9.3939 -3.5780 41 1 7.2348 6.7587 -3.3234 42 1 6.4244 7.0470 -1.7621 43 1 6.6920 4.6860 -4.5046 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099718708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:43 Heat of formation + Delta-G solvation = -84.186223 kcal Electronic energy + Delta-G solvation = -22911.138186 eV Core-core repulsion = 19569.820388 eV Total energy + Delta-G solvation = -3341.317798 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.22017 -39.58004 -37.04314 -36.50072 -35.76091 -34.00700 -32.67778 -31.06667 -30.64821 -27.84809 -27.15185 -25.21974 -24.01613 -23.49664 -21.85966 -21.14182 -19.56593 -18.96829 -18.03818 -17.55215 -17.13386 -16.88383 -16.07045 -15.95248 -15.54085 -15.45192 -15.16879 -14.90593 -14.76658 -14.55283 -13.92264 -13.77433 -13.66549 -13.46696 -13.14276 -12.97077 -12.84574 -12.71242 -12.60805 -12.37652 -12.28681 -12.19556 -12.02316 -11.82010 -11.69974 -11.48138 -10.91966 -10.74257 -10.61285 -10.15247 -9.83688 -8.61437 -7.88854 -5.40478 0.38717 1.46459 1.49231 1.59767 2.16281 2.29872 2.50129 3.25091 3.38267 3.60435 3.74940 3.86044 3.97142 3.99770 4.19629 4.28962 4.32557 4.37295 4.45943 4.58252 4.68112 4.72395 4.76656 4.85743 4.86930 4.93078 5.04809 5.07633 5.10013 5.15024 5.16745 5.35667 5.39459 5.47735 5.53027 5.55748 5.64283 5.65333 6.39359 6.60913 6.90959 7.14626 7.24611 7.79601 8.36397 9.17521 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.041785 B = 0.003484 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.940981 B = 8034.704616 C = 8202.392138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.101 4.101 3 C -0.066 4.066 4 C -0.199 4.199 5 C -0.112 4.112 6 C 0.540 3.460 7 O -0.595 6.595 8 N -0.703 5.703 9 C 0.167 3.833 10 H 0.070 0.930 11 C -0.119 4.119 12 C 0.146 3.854 13 N -0.598 5.598 14 C -0.258 4.258 15 H 0.059 0.941 16 C -0.043 4.043 17 N -0.935 5.935 18 Si 0.970 3.030 19 H -0.270 1.270 20 H -0.295 1.295 21 H -0.285 1.285 22 C 0.154 3.846 23 C 0.092 3.908 24 H 0.069 0.931 25 O -0.560 6.560 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.414 0.586 36 H 0.065 0.935 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.009 0.991 40 H 0.252 0.748 41 H 0.069 0.931 42 H 0.003 0.997 43 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.186 -20.762 3.416 22.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.138 4.138 3 C -0.086 4.086 4 C -0.202 4.202 5 C -0.169 4.169 6 C 0.331 3.669 7 O -0.478 6.478 8 N -0.354 5.354 9 C 0.062 3.938 10 H 0.088 0.912 11 C -0.159 4.159 12 C 0.019 3.981 13 N -0.321 5.321 14 C -0.388 4.388 15 H 0.077 0.923 16 C -0.239 4.239 17 N -0.581 5.581 18 Si 0.798 3.202 19 H -0.194 1.194 20 H -0.222 1.222 21 H -0.211 1.211 22 C 0.027 3.973 23 C 0.031 3.969 24 H 0.086 0.914 25 O -0.367 6.367 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.096 0.904 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.123 0.877 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.113 0.887 35 H 0.252 0.748 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.027 0.973 40 H 0.061 0.939 41 H 0.087 0.913 42 H 0.022 0.978 43 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -7.976 -20.214 4.092 22.112 hybrid contribution 1.228 1.174 -0.812 1.883 sum -6.748 -19.039 3.280 20.464 Atomic orbital electron populations 1.21706 0.94086 1.02889 1.01855 1.20900 0.96732 0.91473 1.04697 1.23780 0.91691 0.98810 0.94348 1.21517 1.03765 0.92038 1.02921 1.20868 1.00576 0.97477 0.97972 1.19125 0.78187 0.89892 0.79703 1.90748 1.55845 1.56833 1.44358 1.45963 1.45119 1.09495 1.34790 1.20701 0.93584 0.81498 0.98055 0.91187 1.22065 0.97348 0.96514 0.99944 1.20961 0.86872 0.93906 0.96328 1.44034 1.02384 1.51461 1.34177 1.19414 1.02273 1.20544 0.96583 0.92299 1.25899 0.99476 0.98599 0.99889 1.70135 1.12827 1.46440 1.28699 0.85174 0.77918 0.77382 0.79712 1.19407 1.22179 1.21128 1.21260 0.92852 0.88203 0.94937 1.22489 0.95089 0.95068 0.84292 0.91370 1.86318 1.39674 1.83196 1.27532 0.92788 0.93286 0.90368 0.88725 0.88918 0.87710 0.90031 0.91498 0.88740 0.74798 0.91635 0.92790 0.92553 0.97294 0.93931 0.91264 0.97850 0.76383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.89 71.98 0.71 -1.02 16 2 C -0.10 -1.23 5.99 29.85 0.18 -1.05 16 3 C -0.07 -1.34 9.08 24.52 0.22 -1.12 16 4 C -0.20 -4.49 5.99 -18.71 -0.11 -4.60 16 5 C -0.11 -1.64 8.60 71.24 0.61 -1.03 16 6 C 0.54 17.13 7.71 86.57 0.67 17.80 16 7 O -0.59 -23.93 15.89 -4.08 -0.06 -23.99 16 8 N -0.70 -21.24 5.00 -446.00 -2.23 -23.47 16 9 C 0.17 6.12 2.20 45.02 0.10 6.22 16 10 H 0.07 2.88 7.57 -2.39 -0.02 2.87 16 11 C -0.12 -4.66 5.51 30.67 0.17 -4.50 16 12 C 0.15 6.61 6.52 86.36 0.56 7.17 16 13 N -0.60 -30.31 2.91 -699.10 -2.04 -32.35 16 14 C -0.26 -14.16 9.55 84.03 0.80 -13.36 16 15 H 0.06 3.23 7.86 -2.91 -0.02 3.21 16 16 C -0.04 -2.36 5.00 84.86 0.42 -1.93 16 17 N -0.94 -54.07 11.29 21.65 0.24 -53.82 16 18 Si 0.97 44.17 29.57 68.60 2.03 46.20 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 20 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 22 C 0.15 7.21 4.89 86.36 0.42 7.63 16 23 C 0.09 3.32 3.38 30.67 0.10 3.42 16 24 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 25 O -0.56 -18.87 12.08 -148.98 -1.80 -20.67 16 26 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.09 0.88 5.86 -2.39 -0.01 0.86 16 31 H 0.10 2.54 7.51 -2.91 -0.02 2.52 16 32 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.07 0.97 6.45 -2.39 -0.02 0.95 16 34 H 0.09 0.96 6.79 -2.39 -0.02 0.94 16 35 H 0.41 10.47 6.25 -92.71 -0.58 9.89 16 36 H 0.06 2.63 7.61 -2.38 -0.02 2.61 16 37 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.06 2.51 7.93 -2.39 -0.02 2.49 16 39 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 41 H 0.07 3.51 6.32 -2.38 -0.02 3.50 16 42 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 43 H 0.39 11.07 9.08 -74.06 -0.67 10.39 16 Total: -1.00 -69.09 343.20 0.77 -68.32 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: -0.24 Total: 26.14 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: 4.87 Total: 13.63 kcal Atomic # 7 Polarization: -105.62 SS G_CDS: -4.02 Total: -109.64 kcal Atomic # 8 Polarization: -42.79 SS G_CDS: -1.87 Total: -44.66 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -69.09 0.77 -68.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099718708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.867 kcal (2) G-P(sol) polarization free energy of solvation -69.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds