Wall clock time and date at job start Tue Mar 31 2020 05:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50699 * 120.00118 * 2 1 4 4 C 1.50704 * 119.99842 * 179.97438 * 2 1 3 5 5 C 1.53001 * 109.46888 * 95.00286 * 4 2 1 6 6 C 1.50704 * 109.46888 * 179.97438 * 5 4 2 7 7 O 1.21280 * 119.99922 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99873 * 179.97438 * 6 5 4 9 9 C 1.46501 * 119.99974 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.44668 * 324.97159 * 9 8 6 11 11 C 1.53039 * 109.45821 * 84.92941 * 9 8 6 12 12 C 1.52763 * 109.38345 * 181.25600 * 11 9 8 13 13 N 1.46918 * 109.01242 * 305.59877 * 12 11 9 14 14 C 1.36937 * 120.62895 * 233.58175 * 13 12 11 15 15 H 1.08001 * 119.99814 * 151.91549 * 14 13 12 16 16 C 1.38804 * 120.00056 * 331.91221 * 14 13 12 17 17 N 1.31622 * 120.00294 * 144.21811 * 16 14 13 18 18 Si 1.86805 * 120.00094 * 323.94007 * 16 14 13 19 19 H 1.48490 * 109.47287 * 270.27874 * 18 16 14 20 20 H 1.48502 * 109.46731 * 30.27780 * 18 16 14 21 21 H 1.48494 * 109.46964 * 150.27266 * 18 16 14 22 22 C 1.46929 * 118.74037 * 53.30256 * 13 12 11 23 23 C 1.53031 * 109.45981 * 205.00512 * 9 8 6 24 24 H 1.09001 * 109.49757 * 298.56426 * 23 9 8 25 25 O 1.42899 * 109.50203 * 58.66365 * 23 9 8 26 26 H 1.07998 * 120.00523 * 179.97438 * 1 2 3 27 27 H 1.08009 * 119.99767 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47473 * 269.99892 * 3 2 1 29 29 H 1.08999 * 109.47083 * 30.00005 * 3 2 1 30 30 H 1.09002 * 109.47363 * 150.00157 * 3 2 1 31 31 H 1.08999 * 109.47165 * 334.99853 * 4 2 1 32 32 H 1.09001 * 109.46757 * 214.99527 * 4 2 1 33 33 H 1.08999 * 109.47571 * 59.99815 * 5 4 2 34 34 H 1.08996 * 109.46679 * 299.99657 * 5 4 2 35 35 H 0.97000 * 119.99834 * 0.02562 * 8 6 5 36 36 H 1.08996 * 109.50485 * 301.33963 * 11 9 8 37 37 H 1.09002 * 109.49353 * 61.44008 * 11 9 8 38 38 H 1.09002 * 109.51080 * 185.70668 * 12 11 9 39 39 H 1.09006 * 109.42870 * 65.43200 * 12 11 9 40 40 H 0.97001 * 119.99515 * 354.69744 * 17 16 14 41 41 H 1.08994 * 109.58634 * 66.43609 * 22 13 12 42 42 H 1.09000 * 109.58968 * 186.71386 * 22 13 12 43 43 H 0.96696 * 114.00208 * 179.83762 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3052 0.0006 5 6 2.4273 -1.6845 -1.4363 6 6 3.1814 -2.9894 -1.4356 7 8 3.4060 -3.5594 -0.3890 8 7 3.6061 -3.5228 -2.5982 9 6 4.3396 -4.7910 -2.5976 10 1 4.9671 -4.8468 -1.7081 11 6 3.3457 -5.9547 -2.5941 12 6 4.1121 -7.2758 -2.5619 13 7 5.0684 -7.3017 -3.6769 14 6 5.0783 -8.3452 -4.5635 15 1 5.4128 -8.1884 -5.5784 16 6 4.6584 -9.6045 -4.1579 17 7 4.0050 -10.3819 -4.9954 18 14 5.0273 -10.1993 -2.4259 19 1 6.3377 -10.8977 -2.4110 20 1 5.0755 -9.0367 -1.5032 21 1 3.9620 -11.1359 -1.9868 22 6 6.0100 -6.1837 -3.8262 23 6 5.2186 -4.8721 -3.8476 24 1 4.5897 -4.8412 -4.7373 25 8 6.1257 -3.7681 -3.8654 26 1 -0.5401 -0.9352 -0.0004 27 1 -0.5400 0.9354 -0.0004 28 1 2.2452 1.6198 -1.0276 29 1 1.4744 2.0647 0.5138 30 1 3.0159 1.1748 0.5138 31 1 1.4385 -2.0853 0.4353 32 1 2.9742 -1.1986 0.5899 33 1 3.0523 -0.9044 -1.8710 34 1 1.5166 -1.7910 -2.0256 35 1 3.4267 -3.0667 -3.4353 36 1 2.7045 -5.8831 -1.7156 37 1 2.7344 -5.9137 -3.4957 38 1 3.4120 -8.1053 -2.6615 39 1 4.6497 -7.3602 -1.6174 40 1 3.7495 -10.0469 -5.8691 41 1 6.7055 -6.1771 -2.9870 42 1 6.5636 -6.2941 -4.7586 43 1 6.7167 -3.7569 -4.6306 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099851338.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:55 Heat of formation + Delta-G solvation = -59.072065 kcal Electronic energy + Delta-G solvation = -22649.967364 eV Core-core repulsion = 19309.738598 eV Total energy + Delta-G solvation = -3340.228767 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.93042 -38.24769 -36.55229 -35.60949 -34.37592 -32.28612 -31.43878 -30.03740 -29.02760 -27.52593 -25.47744 -23.94316 -22.66717 -21.65873 -20.24406 -19.65972 -18.62375 -17.56385 -16.84680 -16.81967 -16.18748 -15.75126 -14.87245 -14.62132 -14.44041 -14.28133 -13.85371 -13.76165 -13.66318 -13.36456 -12.92148 -12.82420 -12.46433 -12.24880 -12.15236 -11.99543 -11.94239 -11.25147 -11.23272 -11.09798 -11.04447 -10.77575 -10.37304 -10.11433 -9.91544 -9.64862 -9.63375 -9.29335 -9.23130 -8.77157 -8.33606 -7.09211 -6.43580 -3.33906 1.96380 2.79497 3.33927 3.50963 3.57332 3.71334 4.29387 4.55791 4.61763 4.67215 4.87011 4.92241 5.01772 5.10772 5.17214 5.28404 5.34460 5.35718 5.41049 5.48876 5.59987 5.66662 5.68029 5.77634 5.79049 5.86805 6.00108 6.11216 6.29577 6.32443 6.40031 6.43689 6.54497 6.64068 6.69983 6.76844 6.90017 7.67527 7.77716 7.98868 8.38273 8.39483 8.94499 9.55658 10.14479 10.97291 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027566 B = 0.003645 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.486856 B = 7679.324023 C = 8179.035927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.071 4.071 5 C -0.133 4.133 6 C 0.510 3.490 7 O -0.544 6.544 8 N -0.718 5.718 9 C 0.162 3.838 10 H 0.088 0.912 11 C -0.143 4.143 12 C 0.143 3.857 13 N -0.595 5.595 14 C -0.368 4.368 15 H 0.065 0.935 16 C 0.008 3.992 17 N -0.895 5.895 18 Si 1.014 2.986 19 H -0.296 1.296 20 H -0.268 1.268 21 H -0.292 1.292 22 C 0.120 3.880 23 C 0.080 3.920 24 H 0.057 0.943 25 O -0.570 6.570 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.397 0.603 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.035 0.965 40 H 0.267 0.733 41 H 0.031 0.969 42 H 0.064 0.936 43 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.557 20.953 4.884 21.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.125 4.125 3 C -0.178 4.178 4 C -0.108 4.108 5 C -0.173 4.173 6 C 0.296 3.704 7 O -0.422 6.422 8 N -0.367 5.367 9 C 0.058 3.942 10 H 0.106 0.894 11 C -0.184 4.184 12 C 0.017 3.983 13 N -0.321 5.321 14 C -0.495 4.495 15 H 0.082 0.918 16 C -0.197 4.197 17 N -0.531 5.531 18 Si 0.843 3.157 19 H -0.224 1.224 20 H -0.193 1.193 21 H -0.219 1.219 22 C -0.008 4.008 23 C 0.019 3.981 24 H 0.075 0.925 25 O -0.375 6.375 26 H 0.116 0.884 27 H 0.114 0.886 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.230 0.770 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.053 0.947 40 H 0.077 0.923 41 H 0.048 0.952 42 H 0.082 0.918 43 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -3.823 19.360 7.168 20.996 hybrid contribution 0.366 1.308 -2.120 2.518 sum -3.457 20.668 5.048 21.555 Atomic orbital electron populations 1.23715 0.95250 1.01854 1.02670 1.21809 0.95452 0.95768 0.99430 1.20886 1.00277 0.94495 1.02109 1.20435 1.00850 0.94127 0.95434 1.21619 1.01103 0.95389 0.99209 1.20642 0.79301 0.86633 0.83786 1.90700 1.57029 1.63046 1.31404 1.46089 1.57395 1.24397 1.08842 1.20925 0.92225 0.82626 0.98410 0.89408 1.22425 0.98271 0.95857 1.01840 1.21338 0.91664 0.94543 0.90743 1.44302 1.34890 1.21067 1.31803 1.20008 1.48873 0.88740 0.91894 0.91771 1.26125 0.96069 0.92430 1.05096 1.70905 1.31498 1.41132 1.09589 0.84662 0.76751 0.76618 0.77707 1.22395 1.19347 1.21877 1.21573 0.92043 0.87015 1.00134 1.22732 0.90948 0.87465 0.96927 0.92472 1.86471 1.52645 1.48124 1.50237 0.88400 0.88594 0.91443 0.91959 0.91721 0.90496 0.90468 0.89025 0.89061 0.76960 0.91518 0.91785 0.91042 0.94689 0.92265 0.95162 0.91791 0.77865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.63 13.89 29.02 0.40 -1.23 16 2 C -0.12 -1.09 5.31 -101.06 -0.54 -1.63 16 3 C -0.12 -0.87 10.03 36.01 0.36 -0.51 16 4 C -0.07 -0.74 4.67 -27.88 -0.13 -0.87 16 5 C -0.13 -1.34 5.68 -27.88 -0.16 -1.50 16 6 C 0.51 7.34 7.79 -10.98 -0.09 7.25 16 7 O -0.54 -10.02 15.64 5.56 0.09 -9.93 16 8 N -0.72 -10.07 4.92 -53.77 -0.26 -10.33 16 9 C 0.16 2.77 2.12 -67.89 -0.14 2.63 16 10 H 0.09 1.72 7.58 -51.93 -0.39 1.32 16 11 C -0.14 -2.66 5.64 -26.83 -0.15 -2.82 16 12 C 0.14 3.15 4.34 -3.94 -0.02 3.13 16 13 N -0.60 -13.93 2.72 -172.59 -0.47 -14.40 16 14 C -0.37 -10.01 9.70 -15.06 -0.15 -10.15 16 15 H 0.06 1.85 8.06 -52.49 -0.42 1.43 16 16 C 0.01 0.21 4.82 -17.43 -0.08 0.13 16 17 N -0.90 -26.90 13.70 55.49 0.76 -26.14 16 18 Si 1.01 25.11 27.01 -169.99 -4.59 20.52 16 19 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 20 H -0.27 -6.18 4.72 56.52 0.27 -5.91 16 21 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 22 C 0.12 2.33 6.14 -3.71 -0.02 2.31 16 23 C 0.08 1.31 3.14 -26.61 -0.08 1.23 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 25 O -0.57 -8.12 13.16 -35.23 -0.46 -8.58 16 26 H 0.10 0.80 7.99 -52.49 -0.42 0.38 16 27 H 0.10 0.67 8.04 -52.48 -0.42 0.25 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.39 8.06 -51.93 -0.42 -0.03 16 30 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 31 H 0.08 0.89 7.95 -51.93 -0.41 0.48 16 32 H 0.08 0.88 8.05 -51.93 -0.42 0.46 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.40 4.55 8.60 -40.82 -0.35 4.20 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.07 1.68 5.83 -51.93 -0.30 1.38 16 39 H 0.04 0.78 6.60 -51.93 -0.34 0.44 16 40 H 0.27 7.94 8.73 -40.82 -0.36 7.58 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 43 H 0.37 3.81 9.08 45.56 0.41 4.22 16 LS Contribution 346.93 15.07 5.23 5.23 Total: -1.00 -32.42 346.93 -7.08 -39.50 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -6.57 Total: 6.17 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -0.79 Total: -2.03 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: 0.03 Total: -50.87 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.38 Total: -18.51 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -4.59 Total: 20.52 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.42 -7.08 -39.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099851338.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.572 kcal (2) G-P(sol) polarization free energy of solvation -32.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds