Wall clock time and date at job start Tue Mar 31 2020 05:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50699 * 119.99640 * 2 1 4 4 C 1.53001 * 109.47241 * 240.27812 * 3 2 1 5 5 C 1.52993 * 109.47238 * 0.28148 * 3 2 1 6 6 C 1.50703 * 109.46800 * 120.28133 * 3 2 1 7 7 O 1.21283 * 119.99886 * 359.97438 * 6 3 2 8 8 N 1.34774 * 120.00215 * 180.02562 * 6 3 2 9 9 C 1.46495 * 120.00333 * 179.97438 * 8 6 3 10 10 H 1.09008 * 109.45939 * 325.02417 * 9 8 6 11 11 C 1.53038 * 109.46205 * 84.99873 * 9 8 6 12 12 C 1.53194 * 109.31282 * 181.38797 * 11 9 8 13 13 N 1.46923 * 108.77297 * 305.36200 * 12 11 9 14 14 C 1.36941 * 120.63286 * 233.58402 * 13 12 11 15 15 H 1.07994 * 119.99982 * 152.79983 * 14 13 12 16 16 C 1.38810 * 119.99949 * 332.80898 * 14 13 12 17 17 N 1.31622 * 120.00480 * 159.74947 * 16 14 13 18 18 Si 1.86797 * 119.99864 * 339.74631 * 16 14 13 19 19 H 1.48500 * 109.47304 * 94.89474 * 18 16 14 20 20 H 1.48500 * 109.47565 * 214.89705 * 18 16 14 21 21 H 1.48504 * 109.47288 * 334.89446 * 18 16 14 22 22 C 1.46928 * 118.74084 * 53.61110 * 13 12 11 23 23 C 1.53042 * 109.46203 * 205.06869 * 9 8 6 24 24 H 1.09008 * 109.49645 * 298.56789 * 23 9 8 25 25 O 1.42900 * 109.49931 * 58.65765 * 23 9 8 26 26 H 1.07997 * 119.99803 * 179.72190 * 1 2 3 27 27 H 1.07994 * 120.00069 * 359.72163 * 1 2 3 28 28 H 1.08004 * 120.00090 * 180.27934 * 2 1 3 29 29 H 1.08996 * 109.47307 * 60.00010 * 4 3 2 30 30 H 1.09004 * 109.47055 * 180.02562 * 4 3 2 31 31 H 1.09000 * 109.46776 * 300.00148 * 4 3 2 32 32 H 1.09000 * 109.47478 * 59.99882 * 5 3 2 33 33 H 1.09004 * 109.47000 * 179.97438 * 5 3 2 34 34 H 1.09005 * 109.47157 * 299.99264 * 5 3 2 35 35 H 0.97002 * 119.99754 * 359.97438 * 8 6 3 36 36 H 1.09001 * 109.49401 * 301.33607 * 11 9 8 37 37 H 1.09001 * 109.49556 * 61.43337 * 11 9 8 38 38 H 1.09000 * 109.59047 * 65.15205 * 12 11 9 39 39 H 1.08997 * 109.58337 * 185.57887 * 12 11 9 40 40 H 0.96994 * 120.00346 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.58595 * 66.17591 * 22 13 12 42 42 H 1.09000 * 109.58456 * 186.45881 * 22 13 12 43 43 H 0.96703 * 114.00183 * 180.02562 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9378 1.3893 -1.2527 5 6 1.0692 2.4680 0.0071 6 6 2.9351 1.3819 1.2270 7 8 2.9432 0.4671 2.0233 8 7 3.7047 2.4676 1.4401 9 6 4.5516 2.5425 2.6331 10 1 4.0464 2.0568 3.4681 11 6 5.8809 1.8350 2.3601 12 6 6.7498 1.8852 3.6207 13 7 6.8873 3.2852 4.0448 14 6 8.1253 3.8345 4.2473 15 1 8.2711 4.8974 4.1240 16 6 9.1927 3.0250 4.6108 17 7 10.4275 3.4405 4.4235 18 14 8.8768 1.3460 5.3661 19 1 8.9102 0.3104 4.3024 20 1 9.9251 1.0522 6.3760 21 1 7.5438 1.3405 6.0206 22 6 5.6714 4.0845 4.2480 23 6 4.8145 4.0096 2.9804 24 1 5.3417 4.4898 2.1560 25 8 3.5710 4.6769 3.2052 26 1 -0.5400 -0.9353 -0.0045 27 1 -0.5400 0.9352 0.0045 28 1 1.8501 -0.9353 -0.0046 29 1 2.3075 1.3337 -2.1402 30 1 3.4831 2.3332 -1.2525 31 1 3.6461 0.5608 -1.2577 32 1 0.4463 2.4080 0.8995 33 1 1.6142 3.4120 0.0075 34 1 0.4389 2.4125 -0.8805 35 1 3.6979 3.1994 0.8034 36 1 5.6912 0.7961 2.0900 37 1 6.3980 2.3357 1.5415 38 1 6.2758 1.3078 4.4145 39 1 7.7342 1.4711 3.4026 40 1 11.1734 2.8750 4.6779 41 1 5.1095 3.6865 5.0929 42 1 5.9444 5.1209 4.4464 43 1 3.6619 5.6130 3.4301 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099945020.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:03 Heat of formation + Delta-G solvation = -70.676912 kcal Electronic energy + Delta-G solvation = -23457.516915 eV Core-core repulsion = 20116.784925 eV Total energy + Delta-G solvation = -3340.731991 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.49575 -39.84622 -37.29106 -37.12944 -35.82228 -34.04087 -32.35470 -31.34257 -30.57012 -28.29195 -27.04914 -25.01813 -24.31373 -23.68808 -21.74623 -21.50277 -19.58515 -18.91376 -18.09926 -17.96221 -17.62541 -17.02177 -16.26866 -16.20431 -15.94655 -15.54718 -15.29516 -14.95113 -14.73560 -14.61775 -14.04826 -13.88860 -13.75052 -13.34217 -13.30206 -13.21591 -13.06997 -12.95638 -12.70909 -12.64349 -12.16640 -12.12692 -11.90645 -11.68720 -11.64081 -11.45483 -11.17755 -10.87206 -10.67609 -10.27352 -10.07396 -9.03581 -8.20987 -5.54365 1.26656 1.30544 1.38547 1.45946 1.64875 2.24272 2.36779 2.90171 3.10428 3.33515 3.58916 3.72271 3.83879 3.97311 4.01767 4.07983 4.12836 4.21559 4.29455 4.46027 4.53466 4.67547 4.71068 4.75495 4.78704 4.82796 4.85991 4.87074 4.90569 5.00749 5.06951 5.21720 5.25446 5.29761 5.45544 5.70358 5.79737 5.83028 6.08350 6.57006 6.77886 6.91045 7.26621 7.54160 7.94282 8.98075 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026642 B = 0.004548 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.705080 B = 6155.648556 C = 6615.494225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.148 4.148 3 C -0.049 4.049 4 C -0.135 4.135 5 C -0.139 4.139 6 C 0.519 3.481 7 O -0.587 6.587 8 N -0.701 5.701 9 C 0.167 3.833 10 H 0.062 0.938 11 C -0.128 4.128 12 C 0.123 3.877 13 N -0.613 5.613 14 C -0.249 4.249 15 H 0.067 0.933 16 C -0.025 4.025 17 N -0.950 5.950 18 Si 0.933 3.067 19 H -0.279 1.279 20 H -0.308 1.308 21 H -0.266 1.266 22 C 0.119 3.881 23 C 0.101 3.899 24 H 0.072 0.928 25 O -0.567 6.567 26 H 0.108 0.892 27 H 0.118 0.882 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.413 0.587 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.026 0.974 39 H 0.057 0.943 40 H 0.263 0.737 41 H 0.031 0.969 42 H 0.079 0.921 43 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.093 0.009 -12.612 23.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.166 4.166 3 C -0.053 4.053 4 C -0.192 4.192 5 C -0.196 4.196 6 C 0.307 3.693 7 O -0.467 6.467 8 N -0.351 5.351 9 C 0.061 3.939 10 H 0.080 0.920 11 C -0.168 4.168 12 C -0.002 4.002 13 N -0.339 5.339 14 C -0.378 4.378 15 H 0.084 0.916 16 C -0.220 4.220 17 N -0.596 5.596 18 Si 0.763 3.237 19 H -0.206 1.206 20 H -0.237 1.237 21 H -0.191 1.191 22 C -0.007 4.007 23 C 0.040 3.960 24 H 0.090 0.910 25 O -0.375 6.375 26 H 0.126 0.874 27 H 0.136 0.864 28 H 0.115 0.885 29 H 0.108 0.892 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.250 0.750 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.044 0.956 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.049 0.951 42 H 0.098 0.902 43 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -20.185 -1.210 -12.153 23.592 hybrid contribution 0.947 -0.256 0.798 1.265 sum -19.238 -1.467 -11.355 22.387 Atomic orbital electron populations 1.24161 0.95336 1.03350 0.99140 1.22552 0.96344 0.96511 1.01214 1.19925 0.95700 0.96605 0.93023 1.21840 0.99169 1.02869 0.95313 1.21954 0.98443 0.95818 1.03407 1.21168 0.79426 0.81258 0.87484 1.90671 1.67865 1.39370 1.48795 1.45835 1.43414 1.20889 1.24983 1.20631 0.90161 0.94945 0.88129 0.92023 1.22230 0.95129 1.00534 0.98895 1.21331 0.98261 0.85991 0.94649 1.44400 1.02227 1.08699 1.78535 1.18903 0.84824 0.94158 1.39909 0.91569 1.25764 0.94925 1.01147 1.00210 1.69919 0.98649 1.39847 1.51161 0.86122 0.76998 0.81941 0.78636 1.20629 1.23660 1.19112 1.21757 0.86681 0.96769 0.95498 1.22267 0.84708 0.91377 0.97624 0.90968 1.86455 1.29089 1.28987 1.92935 0.87421 0.86403 0.88483 0.89201 0.90531 0.93071 0.92808 0.90603 0.88834 0.75049 0.91565 0.90611 0.95649 0.92511 0.92817 0.95135 0.90246 0.75261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.11 13.70 67.78 0.93 -2.18 16 2 C -0.15 -3.13 8.00 25.64 0.21 -2.92 16 3 C -0.05 -0.97 0.84 -53.68 -0.05 -1.01 16 4 C -0.13 -2.02 8.35 71.98 0.60 -1.42 16 5 C -0.14 -1.99 7.02 71.98 0.51 -1.49 16 6 C 0.52 14.73 6.44 87.66 0.56 15.30 16 7 O -0.59 -22.37 15.70 -3.04 -0.05 -22.42 16 8 N -0.70 -18.13 4.70 -442.40 -2.08 -20.21 16 9 C 0.17 5.38 2.12 45.02 0.10 5.48 16 10 H 0.06 2.36 7.58 -2.38 -0.02 2.34 16 11 C -0.13 -4.58 5.65 30.67 0.17 -4.41 16 12 C 0.12 5.39 4.19 86.36 0.36 5.75 16 13 N -0.61 -28.02 2.77 -699.11 -1.94 -29.96 16 14 C -0.25 -13.58 10.04 84.03 0.84 -12.73 16 15 H 0.07 3.84 8.05 -2.91 -0.02 3.81 16 16 C -0.02 -1.43 5.24 84.86 0.44 -0.99 16 17 N -0.95 -58.48 13.97 21.65 0.30 -58.18 16 18 Si 0.93 46.96 24.35 68.60 1.67 48.63 16 19 H -0.28 -13.52 6.70 99.48 0.67 -12.86 16 20 H -0.31 -15.67 7.11 99.48 0.71 -14.96 16 21 H -0.27 -13.14 6.45 99.48 0.64 -12.50 16 22 C 0.12 4.31 6.14 86.36 0.53 4.84 16 23 C 0.10 2.95 3.14 30.67 0.10 3.05 16 24 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 25 O -0.57 -13.64 13.16 -148.98 -1.96 -15.60 16 26 H 0.11 1.59 8.06 -2.91 -0.02 1.56 16 27 H 0.12 1.61 5.69 -2.91 -0.02 1.59 16 28 H 0.10 2.31 8.06 -2.91 -0.02 2.28 16 29 H 0.09 0.98 8.14 -2.39 -0.02 0.97 16 30 H 0.08 0.95 7.56 -2.38 -0.02 0.93 16 31 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.05 0.90 7.50 -2.39 -0.02 0.89 16 33 H 0.08 0.92 7.56 -2.38 -0.02 0.91 16 34 H 0.09 0.91 7.49 -2.38 -0.02 0.89 16 35 H 0.41 8.12 7.44 -92.71 -0.69 7.43 16 36 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 38 H 0.03 1.14 6.98 -2.39 -0.02 1.13 16 39 H 0.06 2.71 4.50 -2.39 -0.01 2.70 16 40 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 41 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.08 2.71 7.93 -2.39 -0.02 2.69 16 43 H 0.40 6.06 9.08 -74.06 -0.67 5.38 16 Total: -1.00 -72.43 336.44 0.79 -71.64 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -0.46 Total: 18.82 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: 5.31 Total: 7.27 kcal Atomic # 7 Polarization: -104.63 SS G_CDS: -3.72 Total: -108.35 kcal Atomic # 8 Polarization: -36.01 SS G_CDS: -2.01 Total: -38.02 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 1.67 Total: 48.63 kcal Total: -72.43 0.79 -71.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099945020.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.965 kcal (2) G-P(sol) polarization free energy of solvation -72.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds