Wall clock time and date at job start Tue Mar 31 2020 05:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99770 * 2 1 4 4 C 1.53002 * 109.47311 * 0.02562 * 3 2 1 5 5 C 1.52997 * 109.46894 * 240.00339 * 3 2 1 6 6 C 1.50703 * 109.47130 * 120.00445 * 3 2 1 7 7 O 1.21281 * 120.00031 * 359.97438 * 6 3 2 8 8 N 1.34775 * 120.00250 * 179.97438 * 6 3 2 9 9 C 1.46491 * 120.00330 * 180.02562 * 8 6 3 10 10 H 1.09000 * 109.44773 * 325.03034 * 9 8 6 11 11 C 1.53041 * 109.46122 * 84.99567 * 9 8 6 12 12 C 1.53191 * 109.33787 * 181.40127 * 11 9 8 13 13 N 1.46928 * 108.77878 * 305.35059 * 12 11 9 14 14 C 1.36928 * 120.62921 * 233.58520 * 13 12 11 15 15 H 1.08002 * 120.00123 * 152.80177 * 14 13 12 16 16 C 1.38808 * 120.00697 * 332.80490 * 14 13 12 17 17 N 1.31623 * 120.00545 * 159.75150 * 16 14 13 18 18 Si 1.86802 * 119.99666 * 339.74961 * 16 14 13 19 19 H 1.48499 * 109.47123 * 94.89461 * 18 16 14 20 20 H 1.48503 * 109.47519 * 214.89127 * 18 16 14 21 21 H 1.48502 * 109.47267 * 334.89448 * 18 16 14 22 22 C 1.46922 * 118.73610 * 53.61223 * 13 12 11 23 23 C 1.53109 * 109.50812 * 205.05129 * 9 8 6 24 24 H 1.09000 * 109.48541 * 58.67145 * 23 9 8 25 25 O 1.42896 * 109.51195 * 298.60491 * 23 9 8 26 26 H 1.07997 * 120.00174 * 180.02562 * 1 2 3 27 27 H 1.07996 * 119.99894 * 359.97438 * 1 2 3 28 28 H 1.07996 * 119.99894 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.46767 * 180.02562 * 4 3 2 30 30 H 1.09004 * 109.46646 * 299.99633 * 4 3 2 31 31 H 1.08997 * 109.46949 * 59.99795 * 4 3 2 32 32 H 1.09009 * 109.47204 * 300.00003 * 5 3 2 33 33 H 1.08998 * 109.47568 * 60.00347 * 5 3 2 34 34 H 1.09004 * 109.47223 * 180.02562 * 5 3 2 35 35 H 0.97004 * 119.99510 * 359.97438 * 8 6 3 36 36 H 1.09003 * 109.49641 * 61.43882 * 11 9 8 37 37 H 1.08996 * 109.50204 * 301.37237 * 11 9 8 38 38 H 1.09001 * 109.58833 * 65.14115 * 12 11 9 39 39 H 1.09003 * 109.58516 * 185.56084 * 12 11 9 40 40 H 0.97001 * 119.99946 * 180.02562 * 17 16 14 41 41 H 1.08993 * 109.59177 * 66.17665 * 22 13 12 42 42 H 1.09005 * 109.58408 * 186.60568 * 22 13 12 43 43 H 0.96702 * 113.99952 * 180.12376 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0692 2.4681 0.0006 5 6 2.9430 1.3862 -1.2493 6 6 2.9299 1.3850 1.2304 7 8 2.9348 0.4721 2.0290 8 7 3.6995 2.4707 1.4435 9 6 4.5422 2.5481 2.6392 10 1 4.0338 2.0646 3.4734 11 6 5.8720 1.8390 2.3726 12 6 6.7369 1.8912 3.6359 13 7 6.8746 3.2920 4.0574 14 6 8.1123 3.8403 4.2627 15 1 8.2597 4.9029 4.1376 16 6 9.1778 3.0307 4.6314 17 7 10.4136 3.4445 4.4471 18 14 8.8578 1.3536 5.3894 19 1 8.8936 0.3157 4.3279 20 1 9.9027 1.0609 6.4032 21 1 7.5226 1.3508 6.0395 22 6 5.6588 4.0929 4.2550 23 6 4.8060 4.0161 2.9848 24 1 3.8574 4.5264 3.1520 25 8 5.5009 4.6432 1.9050 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.6143 3.4120 0.0002 30 1 0.4423 2.4105 -0.8892 31 1 0.4429 2.4101 0.8908 32 1 3.6514 0.5577 -1.2493 33 1 2.3163 1.3285 -2.1393 34 1 3.4883 2.3300 -1.2491 35 1 3.6959 3.2006 0.8046 36 1 6.3924 2.3374 1.5546 37 1 5.6828 0.7998 2.1039 38 1 6.2598 1.3160 4.4294 39 1 7.7216 1.4755 3.4220 40 1 11.1581 2.8785 4.7045 41 1 5.0937 3.6973 5.0989 42 1 5.9321 5.1300 4.4495 43 1 5.7031 5.5766 2.0567 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099945021.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:06 Heat of formation + Delta-G solvation = -42.344985 kcal Electronic energy + Delta-G solvation = -23562.230398 eV Core-core repulsion = 20222.726972 eV Total energy + Delta-G solvation = -3339.503426 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.35017 -38.50114 -36.33312 -35.15976 -34.42952 -32.06605 -31.11127 -29.99368 -29.21864 -27.64977 -25.32059 -23.94467 -22.79263 -22.07984 -20.58204 -19.89769 -18.52475 -17.26635 -16.91756 -16.41257 -16.02412 -15.54323 -15.02786 -14.69525 -14.35319 -14.29790 -14.09502 -13.94971 -13.36880 -12.99176 -12.59483 -12.54917 -12.37221 -12.30053 -12.07674 -11.96649 -11.92723 -11.47114 -11.40446 -11.08944 -10.91901 -10.84376 -10.23919 -10.11613 -10.03947 -9.77724 -9.63215 -9.47403 -9.35692 -8.76842 -8.57495 -6.97264 -5.94390 -3.30240 2.10085 2.74071 3.35907 3.36360 3.50839 3.53705 4.38736 4.51286 4.54344 4.61931 4.74755 4.88386 4.97581 5.13813 5.20097 5.26270 5.29535 5.41198 5.43164 5.51072 5.54408 5.58546 5.71166 5.75501 5.91278 5.94107 5.97774 6.13114 6.25907 6.28930 6.40410 6.45728 6.48990 6.59347 6.65651 6.75603 6.98081 7.67730 7.90772 8.04183 8.31366 8.36205 8.91768 9.71527 10.07834 11.21386 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028472 B = 0.004561 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.202057 B = 6137.071977 C = 6568.071694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.119 4.119 3 C -0.057 4.057 4 C -0.143 4.143 5 C -0.137 4.137 6 C 0.522 3.478 7 O -0.540 6.540 8 N -0.716 5.716 9 C 0.161 3.839 10 H 0.091 0.909 11 C -0.137 4.137 12 C 0.129 3.871 13 N -0.596 5.596 14 C -0.257 4.257 15 H 0.085 0.915 16 C 0.024 3.976 17 N -0.909 5.909 18 Si 0.881 3.119 19 H -0.289 1.289 20 H -0.303 1.303 21 H -0.269 1.269 22 C 0.121 3.879 23 C 0.082 3.918 24 H 0.049 0.951 25 O -0.554 6.554 26 H 0.098 0.902 27 H 0.102 0.898 28 H 0.113 0.887 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.402 0.598 36 H 0.076 0.924 37 H 0.055 0.945 38 H 0.027 0.973 39 H 0.074 0.926 40 H 0.262 0.738 41 H 0.032 0.968 42 H 0.071 0.929 43 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.029 -0.395 -10.276 21.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.137 4.137 3 C -0.060 4.060 4 C -0.200 4.200 5 C -0.194 4.194 6 C 0.307 3.693 7 O -0.416 6.416 8 N -0.367 5.367 9 C 0.057 3.943 10 H 0.108 0.892 11 C -0.177 4.177 12 C 0.003 3.997 13 N -0.319 5.319 14 C -0.385 4.385 15 H 0.102 0.898 16 C -0.175 4.175 17 N -0.552 5.552 18 Si 0.712 3.288 19 H -0.217 1.217 20 H -0.232 1.232 21 H -0.194 1.194 22 C -0.006 4.006 23 C 0.021 3.979 24 H 0.067 0.933 25 O -0.359 6.359 26 H 0.116 0.884 27 H 0.120 0.880 28 H 0.131 0.869 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.236 0.764 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.045 0.955 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.050 0.950 42 H 0.089 0.911 43 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -18.873 -1.656 -9.904 21.378 hybrid contribution 0.058 -0.159 0.429 0.461 sum -18.814 -1.814 -9.475 21.144 Atomic orbital electron populations 1.23924 0.95844 1.02090 1.01707 1.22524 0.95603 0.96762 0.98809 1.19919 0.95762 0.95790 0.94566 1.21943 0.98742 0.96481 1.02832 1.21812 0.99186 1.02951 0.95486 1.20392 0.79781 0.82202 0.86915 1.90696 1.66519 1.37614 1.46809 1.46138 1.43937 1.20768 1.25839 1.20974 0.91203 0.94642 0.87486 0.89151 1.22309 0.95204 0.99202 1.01027 1.21334 0.98638 0.86664 0.93045 1.44185 1.02069 1.07840 1.77825 1.18855 0.83594 0.94911 1.41157 0.89775 1.25239 0.95044 0.97916 0.99285 1.69832 0.97833 1.38247 1.49241 0.86970 0.77387 0.85091 0.79367 1.21660 1.23153 1.19439 1.21573 0.88571 0.97042 0.93422 1.22586 0.93805 0.92101 0.89456 0.93275 1.86442 1.79360 1.28498 1.41566 0.88358 0.87992 0.86890 0.91780 0.91142 0.91775 0.91785 0.91369 0.91589 0.76356 0.90560 0.92625 0.95535 0.90764 0.92781 0.95042 0.91072 0.77754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.84 13.70 29.01 0.40 -1.45 16 2 C -0.12 -1.31 8.00 -36.03 -0.29 -1.59 16 3 C -0.06 -0.61 0.84 -156.81 -0.13 -0.74 16 4 C -0.14 -1.18 7.02 37.16 0.26 -0.92 16 5 C -0.14 -1.25 8.35 37.16 0.31 -0.94 16 6 C 0.52 7.56 6.44 -10.98 -0.07 7.49 16 7 O -0.54 -10.03 15.70 5.56 0.09 -9.94 16 8 N -0.72 -9.90 4.84 -53.73 -0.26 -10.16 16 9 C 0.16 2.68 2.20 -67.86 -0.15 2.53 16 10 H 0.09 1.62 7.57 -51.93 -0.39 1.23 16 11 C -0.14 -2.67 5.51 -26.61 -0.15 -2.82 16 12 C 0.13 2.94 4.19 -3.71 -0.02 2.92 16 13 N -0.60 -13.96 2.72 -172.32 -0.47 -14.42 16 14 C -0.26 -7.09 10.04 -15.06 -0.15 -7.24 16 15 H 0.08 2.44 8.05 -52.49 -0.42 2.02 16 16 C 0.02 0.70 5.24 -17.43 -0.09 0.61 16 17 N -0.91 -27.94 13.97 55.49 0.78 -27.16 16 18 Si 0.88 22.81 24.35 -169.99 -4.14 18.67 16 19 H -0.29 -7.34 6.70 56.52 0.38 -6.96 16 20 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 21 H -0.27 -6.85 6.45 56.52 0.36 -6.48 16 22 C 0.12 2.25 6.16 -3.71 -0.02 2.22 16 23 C 0.08 1.26 3.38 -26.58 -0.09 1.17 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 O -0.55 -8.52 12.09 -35.23 -0.43 -8.95 16 26 H 0.10 0.80 8.06 -52.49 -0.42 0.38 16 27 H 0.10 0.82 5.69 -52.49 -0.30 0.52 16 28 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 29 H 0.06 0.47 7.57 -51.93 -0.39 0.08 16 30 H 0.07 0.47 7.50 -51.93 -0.39 0.08 16 31 H 0.06 0.56 7.50 -51.93 -0.39 0.18 16 32 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.56 7.56 -51.93 -0.39 0.17 16 35 H 0.40 4.75 7.09 -40.82 -0.29 4.46 16 36 H 0.08 1.57 7.61 -51.93 -0.40 1.18 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.03 0.61 6.98 -51.93 -0.36 0.25 16 39 H 0.07 1.86 4.50 -51.93 -0.23 1.62 16 40 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 1.25 7.93 -51.93 -0.41 0.84 16 43 H 0.38 4.61 9.08 45.56 0.41 5.02 16 LS Contribution 334.77 15.07 5.04 5.04 Total: -1.00 -33.41 334.77 -5.69 -39.09 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -6.11 Total: 6.60 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -0.19 Total: 1.23 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: 0.05 Total: -51.75 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.34 Total: -18.89 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.14 Total: 18.67 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.41 -5.69 -39.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099945021.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.254 kcal (2) G-P(sol) polarization free energy of solvation -33.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds