Wall clock time and date at job start Tue Mar 31 2020 05:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46794 * 2 1 4 4 C 1.50701 * 115.55171 * 301.58018 * 3 2 1 5 5 O 1.21277 * 119.99501 * 99.47406 * 4 3 2 6 6 N 1.34776 * 120.00191 * 279.46992 * 4 3 2 7 7 C 1.46500 * 119.99926 * 174.96626 * 6 4 3 8 8 H 1.08996 * 109.46399 * 325.03308 * 7 6 4 9 9 C 1.53044 * 109.45372 * 85.00628 * 7 6 4 10 10 C 1.53201 * 109.30865 * 181.38364 * 9 7 6 11 11 N 1.46922 * 108.77402 * 305.36443 * 10 9 7 12 12 C 1.36941 * 120.62694 * 233.58201 * 11 10 9 13 13 H 1.08008 * 119.99228 * 151.89359 * 12 11 10 14 14 C 1.38807 * 120.00470 * 331.62021 * 12 11 10 15 15 N 1.31626 * 119.99489 * 331.44744 * 14 12 11 16 16 Si 1.86798 * 120.00390 * 151.45027 * 14 12 11 17 17 H 1.48490 * 109.47277 * 94.99020 * 16 14 12 18 18 H 1.48499 * 109.46779 * 214.99405 * 16 14 12 19 19 H 1.48503 * 109.46711 * 334.99033 * 16 14 12 20 20 C 1.46926 * 118.74246 * 53.86477 * 11 10 9 21 21 C 1.53042 * 109.45834 * 205.07056 * 7 6 4 22 22 H 1.08996 * 109.49771 * 298.59621 * 21 7 6 23 23 O 1.42896 * 109.49917 * 58.67117 * 21 7 6 24 24 C 1.53000 * 117.51789 * 87.28611 * 3 2 1 25 25 C 1.52999 * 60.00053 * 107.47730 * 24 3 2 26 26 H 1.09001 * 109.47267 * 65.56769 * 1 2 3 27 27 H 1.09000 * 109.46702 * 185.56773 * 1 2 3 28 28 H 1.08999 * 109.46601 * 305.56430 * 1 2 3 29 29 H 1.09000 * 109.46584 * 240.00447 * 2 1 3 30 30 H 1.08993 * 109.47437 * 120.00369 * 2 1 3 31 31 H 0.96997 * 120.00182 * 354.97665 * 6 4 3 32 32 H 1.08999 * 109.50056 * 61.43743 * 9 7 6 33 33 H 1.09000 * 109.49799 * 301.33121 * 9 7 6 34 34 H 1.08997 * 109.58094 * 185.57389 * 10 9 7 35 35 H 1.09002 * 109.58476 * 65.15342 * 10 9 7 36 36 H 0.96999 * 119.99605 * 180.02562 * 15 14 12 37 37 H 1.09004 * 109.58715 * 65.91985 * 20 11 10 38 38 H 1.08992 * 109.58750 * 186.34997 * 20 11 10 39 39 H 0.96690 * 114.00337 * 179.97438 * 23 21 7 40 40 H 1.08996 * 117.49757 * 214.96512 * 24 3 2 41 41 H 1.09002 * 117.49466 * 359.97438 * 24 3 2 42 42 H 1.09000 * 117.49836 * 252.51257 * 25 24 3 43 43 H 1.09004 * 117.49951 * 107.49008 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5853 2.2927 -1.1583 5 8 0.6590 3.0629 -1.0182 6 7 2.2080 2.1971 -2.3497 7 6 1.6979 2.9403 -3.5046 8 1 0.6098 2.9830 -3.4571 9 6 2.2653 4.3615 -3.4872 10 6 1.7027 5.1461 -4.6767 11 7 1.9829 4.3995 -5.9107 12 6 2.6252 5.0014 -6.9597 13 1 3.2205 4.4098 -7.6394 14 6 2.5065 6.3709 -7.1527 15 7 1.4214 7.0001 -6.7537 16 14 3.8866 7.3208 -7.9788 17 1 3.5996 7.4492 -9.4300 18 1 3.9886 8.6727 -7.3728 19 1 5.1687 6.5956 -7.7900 20 6 1.5552 2.9967 -6.0002 21 6 2.1244 2.2345 -4.7938 22 1 3.2125 2.2130 -4.8539 23 8 1.6199 0.8976 -4.7951 24 6 2.2150 2.1304 1.3554 25 6 3.4436 1.6956 0.5539 26 1 -0.3634 0.4251 -0.9356 27 1 -0.3633 -1.0228 0.0997 28 1 -0.3632 0.5977 0.8360 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 2.9939 1.6362 -2.4426 32 1 3.3521 4.3203 -3.5599 33 1 1.9807 4.8556 -2.5582 34 1 2.1784 6.1256 -4.7262 35 1 0.6258 5.2662 -4.5587 36 1 1.3383 7.9570 -6.8889 37 1 0.4664 2.9451 -5.9880 38 1 1.9335 2.5576 -6.9232 39 1 1.8522 0.3903 -5.5848 40 1 2.0013 3.1979 1.4093 41 1 1.9664 1.5554 2.2474 42 1 4.0035 0.8344 0.9186 43 1 4.0381 2.4770 0.0805 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099989503.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:18 Heat of formation + Delta-G solvation = -50.350036 kcal Electronic energy + Delta-G solvation = -23328.760307 eV Core-core repulsion = 19988.909756 eV Total energy + Delta-G solvation = -3339.850551 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.17694 -38.35131 -36.70927 -35.40402 -34.24084 -32.04977 -31.91859 -30.00420 -28.62082 -25.58132 -24.33229 -22.97114 -22.54256 -22.27489 -21.36494 -19.81090 -18.96233 -17.18118 -16.73320 -16.44658 -15.88152 -15.52064 -14.95828 -14.68480 -14.06678 -14.01042 -13.77396 -13.63095 -13.37452 -13.05118 -12.74371 -12.47680 -12.28341 -12.05131 -11.76384 -11.66708 -11.62855 -11.30142 -11.20631 -10.82347 -10.68596 -10.52079 -10.36952 -10.32932 -10.14056 -9.94255 -9.76849 -9.68252 -9.32662 -8.69639 -8.42464 -6.82082 -5.90582 -3.26871 2.84091 3.28719 3.33708 3.42523 3.45367 3.59031 4.36659 4.44269 4.51604 4.66576 4.75527 4.92899 5.23356 5.23507 5.29419 5.33772 5.44038 5.46035 5.50275 5.54453 5.70576 5.75081 5.79613 5.87696 5.94758 5.96661 6.01267 6.08582 6.23510 6.30438 6.47709 6.50987 6.64024 6.75738 6.87955 7.16684 7.43528 7.75230 7.80140 7.91563 8.33378 8.50392 9.08217 9.74013 10.31906 11.17442 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027287 B = 0.004221 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.899049 B = 6632.143455 C = 7022.646887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.075 4.075 3 C -0.154 4.154 4 C 0.550 3.450 5 O -0.537 6.537 6 N -0.711 5.711 7 C 0.164 3.836 8 H 0.085 0.915 9 C -0.145 4.145 10 C 0.173 3.827 11 N -0.585 5.585 12 C -0.271 4.271 13 H 0.066 0.934 14 C 0.014 3.986 15 N -0.884 5.884 16 Si 0.891 3.109 17 H -0.287 1.287 18 H -0.288 1.288 19 H -0.277 1.277 20 C 0.121 3.879 21 C 0.080 3.920 22 H 0.056 0.944 23 O -0.571 6.571 24 C -0.146 4.146 25 C -0.167 4.167 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.396 0.604 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.025 0.975 36 H 0.255 0.745 37 H 0.029 0.971 38 H 0.061 0.939 39 H 0.373 0.627 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.901 -13.759 12.438 18.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.113 4.113 3 C -0.157 4.157 4 C 0.334 3.666 5 O -0.414 6.414 6 N -0.360 5.360 7 C 0.060 3.940 8 H 0.104 0.896 9 C -0.186 4.186 10 C 0.047 3.953 11 N -0.309 5.309 12 C -0.400 4.400 13 H 0.084 0.916 14 C -0.187 4.187 15 N -0.525 5.525 16 Si 0.720 3.280 17 H -0.214 1.214 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.007 4.007 21 C 0.019 3.981 22 H 0.074 0.926 23 O -0.375 6.375 24 C -0.184 4.184 25 C -0.204 4.204 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.230 0.770 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.044 0.956 36 H 0.065 0.935 37 H 0.047 0.953 38 H 0.079 0.921 39 H 0.220 0.780 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.910 -12.837 13.075 18.553 hybrid contribution 1.261 0.197 -1.079 1.671 sum 4.171 -12.640 11.996 17.918 Atomic orbital electron populations 1.21716 0.94943 1.01290 1.02806 1.20968 0.96576 0.91336 1.02404 1.21537 1.01475 0.97466 0.95216 1.19401 0.82312 0.81922 0.82916 1.90700 1.29342 1.38082 1.83238 1.46047 1.31749 1.48771 1.09478 1.20973 0.99834 0.90897 0.82290 0.89646 1.22560 1.00690 0.94382 1.00927 1.20710 0.97416 0.94855 0.82330 1.44068 1.67356 1.06539 1.12961 1.19045 1.22573 0.91064 1.07336 0.91595 1.24975 0.96422 0.98354 0.98989 1.70211 1.23602 1.09187 1.49509 0.86477 0.83012 0.79559 0.78955 1.21358 1.21414 1.20262 1.21613 0.97087 0.87291 0.94671 1.22861 0.97122 0.81656 0.96422 0.92562 1.86473 1.79919 1.25192 1.45934 1.22964 1.00639 1.01588 0.93197 1.23114 0.90050 1.03722 1.03538 0.92382 0.92660 0.92369 0.91096 0.91220 0.77031 0.92254 0.91847 0.90323 0.95644 0.93469 0.95339 0.92098 0.78012 0.88155 0.88098 0.88027 0.88336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.61 37.16 0.36 -1.32 16 2 C -0.08 -0.75 5.85 -26.73 -0.16 -0.91 16 3 C -0.15 -1.80 1.95 -155.66 -0.30 -2.10 16 4 C 0.55 8.68 6.15 -10.99 -0.07 8.61 16 5 O -0.54 -10.71 16.67 5.56 0.09 -10.62 16 6 N -0.71 -10.77 4.91 -53.76 -0.26 -11.04 16 7 C 0.16 2.97 2.08 -67.89 -0.14 2.83 16 8 H 0.09 1.79 7.65 -51.93 -0.40 1.40 16 9 C -0.15 -2.86 5.65 -26.60 -0.15 -3.01 16 10 C 0.17 4.13 5.42 -3.71 -0.02 4.11 16 11 N -0.59 -14.31 2.98 -172.05 -0.51 -14.82 16 12 C -0.27 -7.27 9.48 -15.06 -0.14 -7.41 16 13 H 0.07 1.73 7.98 -52.48 -0.42 1.31 16 14 C 0.01 0.37 4.57 -17.43 -0.08 0.29 16 15 N -0.88 -25.55 12.04 55.49 0.67 -24.88 16 16 Si 0.89 21.11 29.64 -169.99 -5.04 16.07 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 C 0.12 2.46 6.17 -3.48 -0.02 2.44 16 21 C 0.08 1.36 3.16 -26.38 -0.08 1.28 16 22 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 23 O -0.57 -8.45 13.16 -35.23 -0.46 -8.91 16 24 C -0.15 -1.53 9.86 -26.73 -0.26 -1.79 16 25 C -0.17 -1.56 9.95 -26.73 -0.27 -1.83 16 26 H 0.06 0.79 7.72 -51.93 -0.40 0.39 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.56 8.11 -51.93 -0.42 0.13 16 31 H 0.40 5.07 8.61 -40.82 -0.35 4.71 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.06 1.26 8.09 -51.93 -0.42 0.84 16 34 H 0.08 2.06 6.46 -51.93 -0.34 1.72 16 35 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 39 H 0.37 3.96 9.08 45.56 0.41 4.37 16 40 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 350.12 15.07 5.28 5.28 Total: -1.00 -31.85 350.12 -8.11 -39.96 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -6.53 Total: 7.78 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -1.34 Total: 1.18 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: -0.11 Total: -50.74 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.37 Total: -19.53 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.04 Total: 16.07 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.85 -8.11 -39.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099989503.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.394 kcal (2) G-P(sol) polarization free energy of solvation -31.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds