Wall clock time and date at job start Tue Mar 31 2020 05:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46940 * 2 1 4 4 C 1.50702 * 115.55496 * 304.04831 * 3 2 1 5 5 O 1.21284 * 119.99843 * 89.77051 * 4 3 2 6 6 N 1.34773 * 120.00038 * 269.77103 * 4 3 2 7 7 C 1.46499 * 120.00016 * 184.73381 * 6 4 3 8 8 H 1.08997 * 109.45556 * 325.02507 * 7 6 4 9 9 C 1.53035 * 109.46104 * 85.00015 * 7 6 4 10 10 C 1.53193 * 109.34249 * 58.62510 * 9 7 6 11 11 N 1.46997 * 108.73750 * 54.61905 * 10 9 7 12 12 C 1.36937 * 120.61190 * 126.38887 * 11 10 9 13 13 H 1.08003 * 119.99820 * 211.51935 * 12 11 10 14 14 C 1.38806 * 120.00083 * 31.52189 * 12 11 10 15 15 N 1.31622 * 120.00262 * 10.51744 * 14 12 11 16 16 Si 1.86797 * 120.00233 * 190.51466 * 14 12 11 17 17 H 1.48506 * 109.46938 * 89.99884 * 16 14 12 18 18 H 1.48497 * 109.47549 * 210.00379 * 16 14 12 19 19 H 1.48501 * 109.46920 * 330.00379 * 16 14 12 20 20 C 1.46930 * 118.75758 * 306.41549 * 11 10 9 21 21 C 1.53042 * 109.44713 * 205.06003 * 7 6 4 22 22 H 1.08993 * 109.49799 * 181.36630 * 21 7 6 23 23 O 1.42907 * 109.49657 * 61.30291 * 21 7 6 24 24 C 1.53001 * 117.51600 * 89.74955 * 3 2 1 25 25 C 1.52998 * 117.49702 * 158.37700 * 3 2 1 26 26 H 1.09004 * 109.47186 * 65.19981 * 1 2 3 27 27 H 1.08996 * 109.47163 * 185.20403 * 1 2 3 28 28 H 1.08998 * 109.47396 * 305.20362 * 1 2 3 29 29 H 1.08999 * 109.46948 * 240.00183 * 2 1 3 30 30 H 1.08996 * 109.46889 * 120.00250 * 2 1 3 31 31 H 0.97002 * 119.99821 * 4.72801 * 6 4 3 32 32 H 1.08997 * 109.49617 * 178.59384 * 9 7 6 33 33 H 1.08995 * 109.49678 * 298.65770 * 9 7 6 34 34 H 1.08995 * 109.59268 * 174.43834 * 10 9 7 35 35 H 1.09000 * 109.58651 * 294.86869 * 10 9 7 36 36 H 0.96991 * 120.00200 * 179.97438 * 15 14 12 37 37 H 1.09008 * 109.58558 * 293.81728 * 20 11 10 38 38 H 1.08999 * 109.58490 * 173.39588 * 20 11 10 39 39 H 0.96700 * 113.99813 * 179.97438 * 23 21 7 40 40 H 1.08996 * 117.50034 * 214.97030 * 24 3 2 41 41 H 1.09005 * 117.49916 * 359.97438 * 24 3 2 42 42 H 1.09002 * 117.50139 * 359.97438 * 25 3 2 43 43 H 1.09000 * 117.50242 * 145.00389 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5390 2.3091 -1.1265 5 8 0.5146 2.9447 -0.9932 6 7 2.2292 2.3779 -2.2821 7 6 1.8001 3.2984 -3.3379 8 1 0.7119 3.3604 -3.3453 9 6 2.3882 4.6864 -3.0743 10 6 3.9164 4.5898 -3.0296 11 7 4.3863 3.9606 -4.2723 12 6 5.3358 4.5713 -5.0473 13 1 5.3275 4.4354 -6.1187 14 6 6.3091 5.3649 -4.4559 15 7 6.4503 5.3677 -3.1473 16 14 7.4185 6.4289 -5.5172 17 1 6.7950 7.7640 -5.7018 18 1 8.7372 6.5860 -4.8527 19 1 7.6053 5.7826 -6.8411 20 6 3.8177 2.6647 -4.6673 21 6 2.2907 2.7836 -4.6931 22 1 1.9927 3.4803 -5.4764 23 8 1.7167 1.5007 -4.9522 24 6 2.2700 2.1109 1.3569 25 6 3.4649 1.6880 0.5001 26 1 -0.3634 0.4311 -0.9329 27 1 -0.3633 -1.0234 0.0932 28 1 -0.3634 0.5924 0.8397 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.0101 1.8180 -2.4146 32 1 2.0898 5.3656 -3.8729 33 1 2.0194 5.0625 -2.1201 34 1 4.3433 5.5887 -2.9408 35 1 4.2194 3.9835 -2.1760 36 1 7.1306 5.9220 -2.7341 37 1 4.1127 1.9014 -3.9471 38 1 4.1800 2.3938 -5.6590 39 1 1.9845 1.1134 -5.7968 40 1 2.0589 3.1774 1.4349 41 1 2.0576 1.5231 2.2500 42 1 4.0390 0.8219 0.8295 43 1 4.0400 2.4763 0.0144 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099989504.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:19 Heat of formation + Delta-G solvation = -48.827316 kcal Electronic energy + Delta-G solvation = -23851.479368 eV Core-core repulsion = 20511.694847 eV Total energy + Delta-G solvation = -3339.784521 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.12746 -38.36102 -36.53489 -35.42010 -33.96521 -31.91251 -31.66579 -30.12229 -28.59332 -25.51980 -24.43942 -22.92233 -22.33586 -22.17224 -21.66374 -19.44688 -18.63939 -17.11845 -16.71888 -16.40673 -15.44733 -15.44277 -14.95225 -14.55137 -14.24991 -14.02650 -13.82779 -13.61384 -13.18315 -12.94218 -12.66936 -12.32843 -12.23695 -11.97231 -11.66512 -11.59025 -11.44051 -11.20460 -11.13854 -10.95520 -10.66719 -10.41889 -10.33136 -10.17435 -10.00927 -9.93505 -9.79230 -9.42911 -9.29240 -8.57700 -8.50305 -6.73788 -5.88326 -3.38462 3.00290 3.31485 3.38315 3.39223 3.47000 3.80461 4.35003 4.51542 4.62895 4.86633 4.94823 5.08623 5.29042 5.32649 5.36785 5.45754 5.48384 5.58400 5.63899 5.69896 5.71087 5.90560 5.92491 5.98270 6.06345 6.09675 6.11829 6.20310 6.27207 6.34998 6.45378 6.55275 6.65281 6.70385 7.00411 7.27910 7.60111 7.69329 7.92358 7.97889 8.36690 8.65210 9.10683 9.70796 10.28009 11.19315 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022040 B = 0.005196 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.123674 B = 5387.461852 C = 6030.697756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.075 4.075 3 C -0.155 4.155 4 C 0.553 3.447 5 O -0.548 6.548 6 N -0.699 5.699 7 C 0.164 3.836 8 H 0.078 0.922 9 C -0.154 4.154 10 C 0.174 3.826 11 N -0.586 5.586 12 C -0.259 4.259 13 H 0.065 0.935 14 C 0.009 3.991 15 N -0.902 5.902 16 Si 0.906 3.094 17 H -0.286 1.286 18 H -0.290 1.290 19 H -0.279 1.279 20 C 0.119 3.881 21 C 0.076 3.924 22 H 0.065 0.935 23 O -0.570 6.570 24 C -0.146 4.146 25 C -0.165 4.165 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.402 0.598 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.021 0.979 36 H 0.255 0.745 37 H 0.023 0.977 38 H 0.058 0.942 39 H 0.373 0.627 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.157 -9.138 4.079 12.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.113 4.113 3 C -0.158 4.158 4 C 0.339 3.661 5 O -0.426 6.426 6 N -0.350 5.350 7 C 0.060 3.940 8 H 0.096 0.904 9 C -0.194 4.194 10 C 0.049 3.951 11 N -0.311 5.311 12 C -0.389 4.389 13 H 0.083 0.917 14 C -0.191 4.191 15 N -0.545 5.545 16 Si 0.736 3.264 17 H -0.213 1.213 18 H -0.216 1.216 19 H -0.204 1.204 20 C -0.009 4.009 21 C 0.015 3.985 22 H 0.083 0.917 23 O -0.375 6.375 24 C -0.184 4.184 25 C -0.202 4.202 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.238 0.762 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.108 0.892 35 H 0.039 0.961 36 H 0.065 0.935 37 H 0.040 0.960 38 H 0.077 0.923 39 H 0.219 0.781 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.020 -8.464 4.833 12.622 hybrid contribution 1.326 0.275 -1.138 1.769 sum -6.694 -8.188 3.695 11.203 Atomic orbital electron populations 1.21706 0.95044 1.00983 1.02824 1.20957 0.96434 0.91523 1.02357 1.21476 1.01182 0.97243 0.95915 1.19371 0.83304 0.80952 0.82521 1.90645 1.24264 1.46013 1.81647 1.45908 1.31570 1.42201 1.15309 1.20821 0.99054 0.89419 0.84723 0.90427 1.22609 1.01157 0.94484 1.01188 1.20805 0.87126 0.99945 0.87270 1.43969 1.45030 1.16772 1.25296 1.19158 1.04449 1.25753 0.89534 0.91743 1.25167 0.96954 1.01211 0.95742 1.69966 1.34869 1.41272 1.08410 0.86240 0.79956 0.80571 0.79641 1.21313 1.21617 1.20390 1.21546 0.90583 0.89791 0.98933 1.22744 0.95509 0.84256 0.95999 0.91723 1.86491 1.73083 1.34835 1.43056 1.22944 1.01381 1.01462 0.92601 1.23174 0.89963 1.04005 1.03105 0.92421 0.92899 0.92375 0.91263 0.91207 0.76189 0.91551 0.92111 0.89194 0.96058 0.93462 0.95950 0.92324 0.78073 0.88370 0.88228 0.88101 0.87641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.51 37.16 0.35 -1.44 16 2 C -0.07 -0.87 5.87 -26.73 -0.16 -1.03 16 3 C -0.15 -2.14 1.97 -155.66 -0.31 -2.44 16 4 C 0.55 9.57 6.06 -10.99 -0.07 9.50 16 5 O -0.55 -11.16 16.49 5.55 0.09 -11.07 16 6 N -0.70 -12.03 4.15 -53.77 -0.22 -12.26 16 7 C 0.16 3.00 2.51 -67.89 -0.17 2.83 16 8 H 0.08 1.50 7.51 -51.93 -0.39 1.11 16 9 C -0.15 -3.04 5.77 -26.61 -0.15 -3.19 16 10 C 0.17 3.99 5.00 -3.67 -0.02 3.97 16 11 N -0.59 -13.74 2.99 -172.26 -0.51 -14.25 16 12 C -0.26 -6.75 9.58 -15.06 -0.14 -6.90 16 13 H 0.06 1.65 7.85 -52.48 -0.41 1.23 16 14 C 0.01 0.23 5.05 -17.43 -0.09 0.14 16 15 N -0.90 -25.08 11.05 55.49 0.61 -24.47 16 16 Si 0.91 20.95 29.57 -169.99 -5.03 15.93 16 17 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 C 0.12 2.29 5.85 -3.71 -0.02 2.26 16 21 C 0.08 1.29 3.36 -26.61 -0.09 1.20 16 22 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 23 O -0.57 -8.62 13.21 -35.23 -0.47 -9.09 16 24 C -0.15 -1.84 9.93 -26.73 -0.27 -2.11 16 25 C -0.17 -2.10 9.95 -26.73 -0.27 -2.37 16 26 H 0.06 0.82 7.53 -51.93 -0.39 0.43 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 31 H 0.40 6.75 6.87 -40.82 -0.28 6.47 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.09 2.35 6.11 -51.93 -0.32 2.03 16 35 H 0.02 0.51 7.74 -51.93 -0.40 0.11 16 36 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 37 H 0.02 0.44 6.64 -51.92 -0.34 0.09 16 38 H 0.06 1.09 7.93 -51.93 -0.41 0.67 16 39 H 0.37 4.03 9.08 45.56 0.41 4.45 16 40 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 LS Contribution 344.26 15.07 5.19 5.19 Total: -1.00 -30.22 344.26 -8.05 -38.27 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -6.32 Total: 11.31 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -1.39 Total: 0.44 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: -0.12 Total: -50.97 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.37 Total: -20.16 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.93 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.22 -8.05 -38.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099989504.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.561 kcal (2) G-P(sol) polarization free energy of solvation -30.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds