Wall clock time and date at job start Tue Mar 31 2020 05:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 110.45678 * 2 1 4 4 O 1.21281 * 120.00164 * 239.30085 * 3 2 1 5 5 N 1.34777 * 119.99720 * 59.29994 * 3 2 1 6 6 C 1.46508 * 120.00013 * 180.02562 * 5 3 2 7 7 C 1.52991 * 109.47429 * 180.02562 * 6 5 3 8 8 C 1.53781 * 113.61529 * 184.99923 * 7 6 5 9 9 C 1.53786 * 87.17350 * 219.97788 * 8 7 6 10 10 N 1.46494 * 113.61370 * 140.02367 * 9 8 7 11 11 C 1.36939 * 119.99621 * 155.00092 * 10 9 8 12 12 H 1.07999 * 120.00346 * 359.97438 * 11 10 9 13 13 C 1.38816 * 119.99701 * 180.02562 * 11 10 9 14 14 N 1.31611 * 120.00114 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99994 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.47155 * 89.99518 * 15 13 11 17 17 H 1.48498 * 109.47274 * 209.99561 * 15 13 11 18 18 H 1.48506 * 109.46913 * 329.99906 * 15 13 11 19 19 C 1.53781 * 113.61611 * 87.50116 * 7 6 5 20 20 C 1.54507 * 110.50961 * 237.39780 * 2 1 3 21 21 C 1.54476 * 104.06254 * 241.21851 * 20 2 1 22 22 O 1.44428 * 104.80206 * 23.97708 * 21 20 2 23 23 C 1.44639 * 105.36863 * 319.56554 * 22 21 20 24 24 H 1.08998 * 109.47380 * 60.70010 * 1 2 3 25 25 H 1.08991 * 109.47296 * 180.70074 * 1 2 3 26 26 H 1.09009 * 109.47207 * 300.70182 * 1 2 3 27 27 H 0.96996 * 120.00851 * 359.97438 * 5 3 2 28 28 H 1.08997 * 109.46666 * 59.99730 * 6 5 3 29 29 H 1.09002 * 109.46731 * 300.00370 * 6 5 3 30 30 H 1.08999 * 112.90686 * 316.25260 * 7 6 5 31 31 H 1.09002 * 113.61445 * 334.56787 * 8 7 6 32 32 H 1.09002 * 113.61408 * 105.38518 * 8 7 6 33 33 H 1.09000 * 113.60973 * 270.92699 * 9 8 7 34 34 H 0.97000 * 120.00537 * 335.00117 * 10 9 8 35 35 H 0.97002 * 120.00116 * 180.02562 * 14 13 11 36 36 H 1.09005 * 113.61471 * 254.53285 * 19 7 6 37 37 H 1.08996 * 113.61178 * 25.34627 * 19 7 6 38 38 H 1.09002 * 110.51207 * 359.85911 * 20 2 1 39 39 H 1.08995 * 110.51339 * 122.43132 * 20 2 1 40 40 H 1.09000 * 110.37479 * 142.80845 * 21 20 2 41 41 H 1.09000 * 110.37280 * 265.03544 * 21 20 2 42 42 H 1.08994 * 110.34426 * 281.59025 * 23 22 21 43 43 H 1.09005 * 110.50962 * 159.18561 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0567 1.4119 0.0000 4 8 2.7711 1.7927 -0.9031 5 7 1.7339 2.2516 1.0036 6 6 2.2454 3.6244 1.0034 7 6 1.7343 4.3594 2.2441 8 6 2.1152 5.8489 2.2783 9 6 2.3743 5.6698 3.7835 10 7 3.5576 6.3869 4.2647 11 6 3.6456 6.7576 5.5801 12 1 2.8425 6.5216 6.2626 13 6 4.7666 7.4376 6.0359 14 7 5.7451 7.7257 5.2041 15 14 4.8865 7.9440 7.8301 16 1 5.5349 6.8582 8.6086 17 1 5.6957 9.1841 7.9414 18 1 3.5241 8.1920 8.3664 19 6 2.6332 4.1820 3.4792 20 6 2.0714 -0.7797 -1.2191 21 6 2.8786 -1.9394 -0.5947 22 8 2.3118 -2.1165 0.7218 23 6 2.0713 -0.7796 1.2188 24 1 -0.3634 0.5029 -0.8962 25 1 -0.3633 -1.0275 0.0126 26 1 -0.3634 0.5247 0.8837 27 1 1.1623 1.9472 1.7258 28 1 1.9008 4.1403 0.1073 29 1 3.3352 3.6060 1.0156 30 1 0.6786 4.1740 2.4422 31 1 3.0126 6.0834 1.7057 32 1 1.2838 6.5174 2.0548 33 1 1.4932 5.8420 4.4017 34 1 4.2787 6.5992 3.6517 35 1 6.5286 8.2005 5.5228 36 1 2.2196 3.5049 4.2266 37 1 3.6718 3.9593 3.2348 38 1 1.2490 -1.1673 -1.8205 39 1 2.7179 -0.1433 -1.8231 40 1 2.7573 -2.8474 -1.1854 41 1 3.9329 -1.6723 -0.5229 42 1 3.0010 -0.3338 1.5720 43 1 1.3302 -0.7968 2.0179 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100785751.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:45 Heat of formation + Delta-G solvation = -61.104040 kcal Electronic energy + Delta-G solvation = -22209.484411 eV Core-core repulsion = 18869.167532 eV Total energy + Delta-G solvation = -3340.316880 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.88896 -39.02002 -38.20228 -34.82558 -33.91888 -33.23503 -30.45007 -29.97521 -27.45736 -26.86256 -25.12119 -24.04461 -23.24493 -22.45861 -21.09727 -19.81702 -18.96772 -17.65633 -17.05560 -16.62865 -15.97996 -15.70156 -15.50330 -15.04734 -14.80119 -14.63386 -14.08471 -13.70394 -13.55060 -13.37421 -13.04201 -12.80890 -12.61698 -12.31048 -11.95468 -11.85955 -11.59431 -11.43906 -11.38512 -11.25628 -11.12437 -10.85201 -10.55315 -10.27133 -10.15397 -10.08434 -9.86348 -9.82426 -9.50801 -9.10952 -8.88947 -6.98860 -5.80461 -3.09511 2.44435 2.98194 3.41246 3.46342 3.48189 3.64335 3.99088 4.35348 4.44312 4.56266 4.64564 4.85188 4.87381 4.92581 4.97135 5.15634 5.19359 5.26850 5.35567 5.41076 5.43667 5.44175 5.46930 5.60293 5.72414 5.75672 5.77989 5.81698 5.89687 6.06026 6.20673 6.27699 6.32197 6.38536 6.41194 6.55529 6.78983 7.07738 7.35955 7.66881 8.05775 8.38060 9.49126 10.07221 10.41271 11.41909 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029321 B = 0.002876 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.724073 B = 9731.928512 C =10026.476689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.117 4.117 3 C 0.523 3.477 4 O -0.538 6.538 5 N -0.720 5.720 6 C 0.131 3.869 7 C -0.127 4.127 8 C -0.142 4.142 9 C 0.166 3.834 10 N -0.713 5.713 11 C -0.245 4.245 12 H 0.071 0.929 13 C -0.013 4.013 14 N -0.932 5.932 15 Si 0.907 3.093 16 H -0.289 1.289 17 H -0.291 1.291 18 H -0.282 1.282 19 C -0.162 4.162 20 C -0.143 4.143 21 C 0.044 3.956 22 O -0.371 6.371 23 C 0.059 3.941 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.400 0.600 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.385 0.615 35 H 0.256 0.744 36 H 0.053 0.947 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.855 -17.290 -11.625 23.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.121 4.121 3 C 0.308 3.692 4 O -0.414 6.414 5 N -0.371 5.371 6 C 0.008 3.992 7 C -0.147 4.147 8 C -0.182 4.182 9 C 0.054 3.946 10 N -0.350 5.350 11 C -0.376 4.376 12 H 0.089 0.911 13 C -0.209 4.209 14 N -0.580 5.580 15 Si 0.738 3.262 16 H -0.217 1.217 17 H -0.217 1.217 18 H -0.207 1.207 19 C -0.203 4.203 20 C -0.181 4.181 21 C -0.032 4.032 22 O -0.289 6.289 23 C -0.018 4.018 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.234 0.766 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.219 0.781 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.120 0.880 40 H 0.112 0.888 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -11.366 -17.105 -11.954 23.763 hybrid contribution 0.163 0.431 1.001 1.102 sum -11.204 -16.674 -10.954 22.880 Atomic orbital electron populations 1.21826 0.91267 1.03275 1.02755 1.22179 0.98357 0.93250 0.98267 1.20203 0.80358 0.86724 0.81902 1.90685 1.37376 1.77210 1.36171 1.46043 1.52261 1.13291 1.25500 1.21476 0.99240 0.80126 0.98366 1.22635 0.99699 0.97402 0.94928 1.23451 1.01169 0.93408 1.00184 1.21557 0.91487 0.90046 0.91514 1.42411 1.18063 1.65930 1.08631 1.19300 1.02237 1.29847 0.86244 0.91091 1.24775 0.96908 1.01250 0.97962 1.69657 1.08678 1.45789 1.33865 0.86191 0.77396 0.77809 0.84785 1.21674 1.21743 1.20723 1.24004 0.98936 1.01854 0.95478 1.23038 1.01166 0.96971 0.96939 1.23459 0.97235 0.98772 0.83773 1.89155 1.83107 1.25346 1.31327 1.23505 1.00699 0.82717 0.94924 0.91707 0.90863 0.91784 0.76572 0.91696 0.91146 0.89374 0.90118 0.92002 0.90646 0.78057 0.93417 0.92769 0.90377 0.90066 0.88045 0.88801 0.91950 0.91563 0.88091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.91 8.18 37.16 0.30 -0.60 16 2 C -0.12 -1.05 0.89 -154.09 -0.14 -1.18 16 3 C 0.52 6.19 6.40 -10.99 -0.07 6.12 16 4 O -0.54 -8.45 15.28 5.56 0.08 -8.37 16 5 N -0.72 -7.59 5.43 -60.29 -0.33 -7.92 16 6 C 0.13 1.64 5.51 -4.04 -0.02 1.62 16 7 C -0.13 -1.62 3.76 -89.81 -0.34 -1.96 16 8 C -0.14 -2.20 7.39 -25.92 -0.19 -2.40 16 9 C 0.17 3.14 4.49 -66.98 -0.30 2.84 16 10 N -0.71 -17.61 5.41 -52.50 -0.28 -17.89 16 11 C -0.25 -6.73 9.97 -15.06 -0.15 -6.88 16 12 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 13 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 14 N -0.93 -28.06 13.06 55.49 0.72 -27.34 16 15 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 16 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 17 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 C -0.16 -2.58 7.44 -25.78 -0.19 -2.77 16 20 C -0.14 -1.27 6.32 -25.17 -0.16 -1.43 16 21 C 0.04 0.38 7.64 37.93 0.29 0.67 16 22 O -0.37 -3.84 11.65 -35.23 -0.41 -4.25 16 23 C 0.06 0.52 6.72 37.93 0.25 0.78 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.35 7.59 -51.92 -0.39 -0.04 16 27 H 0.40 3.23 7.91 -40.82 -0.32 2.91 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.07 1.02 7.84 -51.93 -0.41 0.62 16 30 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.08 1.32 8.08 -51.93 -0.42 0.90 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 34 H 0.39 10.17 7.92 -40.82 -0.32 9.84 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 1.39 7.89 -51.93 -0.41 0.98 16 38 H 0.08 0.60 7.73 -51.93 -0.40 0.19 16 39 H 0.10 1.08 6.50 -51.93 -0.34 0.74 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.65 7.86 -51.93 -0.41 0.24 16 43 H 0.10 0.70 7.87 -51.93 -0.41 0.29 16 LS Contribution 348.49 15.07 5.25 5.25 Total: -1.00 -32.29 348.49 -7.97 -40.26 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -7.18 Total: 8.73 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -0.81 Total: -5.65 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: 0.11 Total: -53.15 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: -0.33 Total: -12.61 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.29 -7.97 -40.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100785751.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.844 kcal (2) G-P(sol) polarization free energy of solvation -32.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds