Wall clock time and date at job start Tue Mar 31 2020 05:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 110.45678 * 2 1 4 4 O 1.21281 * 120.00164 * 239.30085 * 3 2 1 5 5 N 1.34777 * 119.99720 * 59.29994 * 3 2 1 6 6 C 1.46508 * 120.00013 * 180.02562 * 5 3 2 7 7 C 1.52991 * 109.47429 * 180.02562 * 6 5 3 8 8 C 1.53781 * 113.61529 * 184.99923 * 7 6 5 9 9 C 1.53786 * 87.17350 * 219.97788 * 8 7 6 10 10 N 1.46494 * 113.61370 * 140.02367 * 9 8 7 11 11 C 1.36939 * 119.99621 * 155.00092 * 10 9 8 12 12 H 1.07999 * 120.00346 * 359.97438 * 11 10 9 13 13 C 1.38816 * 119.99701 * 180.02562 * 11 10 9 14 14 N 1.31611 * 120.00114 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99994 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.47155 * 89.99518 * 15 13 11 17 17 H 1.48498 * 109.47274 * 209.99561 * 15 13 11 18 18 H 1.48506 * 109.46913 * 329.99906 * 15 13 11 19 19 C 1.53781 * 113.61611 * 87.50116 * 7 6 5 20 20 C 1.54507 * 110.50961 * 237.39780 * 2 1 3 21 21 C 1.54476 * 104.06254 * 241.21851 * 20 2 1 22 22 O 1.44428 * 104.80206 * 23.97708 * 21 20 2 23 23 C 1.44639 * 105.36863 * 319.56554 * 22 21 20 24 24 H 1.08998 * 109.47380 * 60.70010 * 1 2 3 25 25 H 1.08991 * 109.47296 * 180.70074 * 1 2 3 26 26 H 1.09009 * 109.47207 * 300.70182 * 1 2 3 27 27 H 0.96996 * 120.00851 * 359.97438 * 5 3 2 28 28 H 1.08997 * 109.46666 * 59.99730 * 6 5 3 29 29 H 1.09002 * 109.46731 * 300.00370 * 6 5 3 30 30 H 1.08999 * 112.90686 * 316.25260 * 7 6 5 31 31 H 1.09002 * 113.61445 * 334.56787 * 8 7 6 32 32 H 1.09002 * 113.61408 * 105.38518 * 8 7 6 33 33 H 1.09000 * 113.60973 * 270.92699 * 9 8 7 34 34 H 0.97000 * 120.00537 * 335.00117 * 10 9 8 35 35 H 0.97002 * 120.00116 * 180.02562 * 14 13 11 36 36 H 1.09005 * 113.61471 * 254.53285 * 19 7 6 37 37 H 1.08996 * 113.61178 * 25.34627 * 19 7 6 38 38 H 1.09002 * 110.51207 * 359.85911 * 20 2 1 39 39 H 1.08995 * 110.51339 * 122.43132 * 20 2 1 40 40 H 1.09000 * 110.37479 * 142.80845 * 21 20 2 41 41 H 1.09000 * 110.37280 * 265.03544 * 21 20 2 42 42 H 1.08994 * 110.34426 * 281.59025 * 23 22 21 43 43 H 1.09005 * 110.50962 * 159.18561 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0567 1.4119 0.0000 4 8 2.7711 1.7927 -0.9031 5 7 1.7339 2.2516 1.0036 6 6 2.2454 3.6244 1.0034 7 6 1.7343 4.3594 2.2441 8 6 2.1152 5.8489 2.2783 9 6 2.3743 5.6698 3.7835 10 7 3.5576 6.3869 4.2647 11 6 3.6456 6.7576 5.5801 12 1 2.8425 6.5216 6.2626 13 6 4.7666 7.4376 6.0359 14 7 5.7451 7.7257 5.2041 15 14 4.8865 7.9440 7.8301 16 1 5.5349 6.8582 8.6086 17 1 5.6957 9.1841 7.9414 18 1 3.5241 8.1920 8.3664 19 6 2.6332 4.1820 3.4792 20 6 2.0714 -0.7797 -1.2191 21 6 2.8786 -1.9394 -0.5947 22 8 2.3118 -2.1165 0.7218 23 6 2.0713 -0.7796 1.2188 24 1 -0.3634 0.5029 -0.8962 25 1 -0.3633 -1.0275 0.0126 26 1 -0.3634 0.5247 0.8837 27 1 1.1623 1.9472 1.7258 28 1 1.9008 4.1403 0.1073 29 1 3.3352 3.6060 1.0156 30 1 0.6786 4.1740 2.4422 31 1 3.0126 6.0834 1.7057 32 1 1.2838 6.5174 2.0548 33 1 1.4932 5.8420 4.4017 34 1 4.2787 6.5992 3.6517 35 1 6.5286 8.2005 5.5228 36 1 2.2196 3.5049 4.2266 37 1 3.6718 3.9593 3.2348 38 1 1.2490 -1.1673 -1.8205 39 1 2.7179 -0.1433 -1.8231 40 1 2.7573 -2.8474 -1.1854 41 1 3.9329 -1.6723 -0.5229 42 1 3.0010 -0.3338 1.5720 43 1 1.3302 -0.7968 2.0179 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100785751.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:45 Heat of formation + Delta-G solvation = -84.254757 kcal Electronic energy + Delta-G solvation = -22210.488302 eV Core-core repulsion = 18869.167532 eV Total energy + Delta-G solvation = -3341.320770 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.73370 -40.15738 -39.25707 -36.10930 -35.15275 -34.47676 -32.19036 -30.82251 -28.65789 -27.51068 -26.45159 -25.88072 -24.05954 -23.37933 -22.35976 -20.92769 -20.17262 -19.04123 -18.45073 -17.46108 -16.95284 -16.73077 -16.56621 -16.23394 -15.99545 -15.81944 -15.34555 -15.11872 -14.70234 -14.47068 -14.22275 -13.51709 -13.44440 -13.24363 -13.22272 -13.09990 -13.00241 -12.92246 -12.63063 -12.28761 -12.21063 -12.07876 -12.01529 -11.80730 -11.57089 -11.53249 -11.10572 -10.84224 -10.80648 -10.72041 -10.12024 -8.97753 -7.94741 -5.23104 1.47407 1.49018 1.52058 1.57408 2.08631 2.56758 2.94562 3.29072 3.37339 3.63807 3.74420 3.75436 3.75474 3.89786 4.00476 4.19224 4.20060 4.25684 4.35468 4.42249 4.54973 4.57215 4.65451 4.72935 4.75975 4.81564 4.88554 4.97042 4.98355 4.99017 5.04443 5.06510 5.22229 5.24100 5.35407 5.42627 5.53035 5.69646 5.73422 6.27712 6.49905 7.17257 7.33084 8.11698 8.33003 9.28904 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029321 B = 0.002876 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.724073 B = 9731.928512 C =10026.476689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.111 4.111 3 C 0.520 3.480 4 O -0.582 6.582 5 N -0.708 5.708 6 C 0.137 3.863 7 C -0.094 4.094 8 C -0.138 4.138 9 C 0.143 3.857 10 N -0.731 5.731 11 C -0.242 4.242 12 H 0.080 0.920 13 C -0.080 4.080 14 N -0.973 5.973 15 Si 0.973 3.027 16 H -0.288 1.288 17 H -0.298 1.298 18 H -0.266 1.266 19 C -0.154 4.154 20 C -0.144 4.144 21 C 0.042 3.958 22 O -0.384 6.384 23 C 0.058 3.942 24 H 0.062 0.938 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.416 0.584 28 H 0.066 0.934 29 H 0.044 0.956 30 H 0.125 0.875 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.371 0.629 35 H 0.250 0.750 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.115 0.885 41 H 0.053 0.947 42 H 0.051 0.949 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.652 -18.744 -11.092 26.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.114 4.114 3 C 0.307 3.693 4 O -0.462 6.462 5 N -0.359 5.359 6 C 0.013 3.987 7 C -0.113 4.113 8 C -0.177 4.177 9 C 0.033 3.967 10 N -0.368 5.368 11 C -0.374 4.374 12 H 0.098 0.902 13 C -0.272 4.272 14 N -0.624 5.624 15 Si 0.802 3.198 16 H -0.215 1.215 17 H -0.225 1.225 18 H -0.191 1.191 19 C -0.195 4.195 20 C -0.182 4.182 21 C -0.034 4.034 22 O -0.303 6.303 23 C -0.019 4.019 24 H 0.081 0.919 25 H 0.103 0.897 26 H 0.100 0.900 27 H 0.253 0.747 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.142 0.858 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.203 0.797 35 H 0.059 0.941 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.118 0.882 39 H 0.098 0.902 40 H 0.133 0.867 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.246 -18.605 -11.403 26.060 hybrid contribution 0.997 0.841 0.781 1.520 sum -13.249 -17.764 -10.622 24.575 Atomic orbital electron populations 1.21851 0.89013 1.04336 1.03574 1.22186 0.99966 0.90938 0.98325 1.20753 0.79506 0.87821 0.81203 1.90673 1.39360 1.78241 1.37952 1.45891 1.51974 1.12334 1.25728 1.21241 0.97826 0.81327 0.98270 1.22465 1.00798 0.94901 0.93121 1.23333 1.01255 0.95967 0.97159 1.22014 0.89786 0.91342 0.93544 1.42646 1.19535 1.66929 1.07698 1.19742 1.01912 1.28132 0.87572 0.90208 1.25603 0.97053 1.02503 1.02052 1.69823 1.09318 1.47535 1.35712 0.85144 0.77753 0.76860 0.80046 1.21542 1.22477 1.19094 1.23774 0.98547 0.99656 0.97486 1.23042 1.01441 0.96706 0.96991 1.23553 0.96673 0.99669 0.83543 1.89141 1.83181 1.26018 1.31964 1.23601 1.00777 0.82136 0.95418 0.91853 0.89698 0.90035 0.74697 0.91597 0.93718 0.85758 0.91684 0.90263 0.89979 0.79709 0.94120 0.91191 0.92818 0.88246 0.90237 0.86742 0.92865 0.93026 0.85584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.33 8.18 71.98 0.59 -0.75 16 2 C -0.11 -1.77 0.89 -51.91 -0.05 -1.82 16 3 C 0.52 11.75 6.40 87.66 0.56 12.31 16 4 O -0.58 -18.48 15.28 -3.03 -0.05 -18.53 16 5 N -0.71 -13.42 5.43 -463.06 -2.51 -15.94 16 6 C 0.14 3.25 5.51 86.37 0.48 3.73 16 7 C -0.09 -2.14 3.76 -10.27 -0.04 -2.18 16 8 C -0.14 -4.07 7.39 31.12 0.23 -3.84 16 9 C 0.14 5.24 4.49 45.61 0.20 5.44 16 10 N -0.73 -36.51 5.41 -320.01 -1.73 -38.24 16 11 C -0.24 -13.27 9.97 84.03 0.84 -12.44 16 12 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 13 C -0.08 -4.61 5.50 84.86 0.47 -4.15 16 14 N -0.97 -60.18 13.06 21.65 0.28 -59.89 16 15 Si 0.97 45.96 29.55 68.60 2.03 47.98 16 16 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 17 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 18 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 19 C -0.15 -4.69 7.44 31.21 0.23 -4.46 16 20 C -0.14 -2.39 6.32 31.61 0.20 -2.19 16 21 C 0.04 0.68 7.64 72.48 0.55 1.23 16 22 O -0.38 -7.27 11.65 -148.98 -1.74 -9.01 16 23 C 0.06 0.91 6.72 72.48 0.49 1.40 16 24 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.08 0.55 7.59 -2.38 -0.02 0.53 16 27 H 0.42 5.24 7.91 -92.71 -0.73 4.51 16 28 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.04 1.31 7.84 -2.39 -0.02 1.29 16 30 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.06 2.15 8.08 -2.39 -0.02 2.13 16 32 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.08 2.90 8.10 -2.39 -0.02 2.88 16 34 H 0.37 20.26 7.92 -92.71 -0.73 19.53 16 35 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 36 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 37 H 0.05 1.92 7.89 -2.39 -0.02 1.90 16 38 H 0.10 1.26 7.73 -2.39 -0.02 1.24 16 39 H 0.08 1.71 6.50 -2.39 -0.02 1.70 16 40 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.05 0.96 7.86 -2.39 -0.02 0.94 16 43 H 0.13 1.32 7.87 -2.38 -0.02 1.30 16 Total: -1.00 -71.68 348.49 0.58 -71.11 By element: Atomic # 1 Polarization: 30.68 SS G_CDS: -0.46 Total: 30.21 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: 4.75 Total: -7.69 kcal Atomic # 7 Polarization: -110.11 SS G_CDS: -3.96 Total: -114.08 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -1.78 Total: -27.54 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.98 kcal Total: -71.68 0.58 -71.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100785751.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.146 kcal (2) G-P(sol) polarization free energy of solvation -71.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds