Wall clock time and date at job start Tue Mar 31 2020 05:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00461 * 2 1 3 5 5 C 1.53947 * 113.74229 * 276.67315 * 4 2 1 6 6 N 1.47578 * 86.11759 * 222.04575 * 5 4 2 7 7 C 1.34772 * 134.49503 * 204.63181 * 6 5 4 8 8 O 1.21351 * 120.00351 * 180.02562 * 7 6 5 9 9 C 1.49455 * 119.99861 * 0.02562 * 7 6 5 10 10 O 1.21342 * 119.99836 * 359.97438 * 9 7 6 11 11 N 1.34777 * 119.99813 * 179.97438 * 9 7 6 12 12 C 1.46503 * 119.99629 * 179.97438 * 11 9 7 13 13 C 1.52999 * 109.47052 * 180.02562 * 12 11 9 14 14 C 1.52995 * 109.47208 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47341 * 180.02562 * 14 13 12 16 16 H 1.08007 * 120.00012 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00525 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99434 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00238 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47411 * 59.99995 * 19 17 15 21 21 H 1.48506 * 109.47286 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47209 * 299.99837 * 19 17 15 23 23 C 1.47583 * 91.01530 * 24.64023 * 6 5 4 24 24 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 27 27 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 28 28 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 29 29 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 30 30 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 31 31 H 1.08997 * 112.94754 * 48.40407 * 4 2 1 32 32 H 1.09000 * 113.76890 * 336.34953 * 5 4 2 33 33 H 1.08999 * 113.77016 * 107.74293 * 5 4 2 34 34 H 0.96994 * 120.00201 * 0.02562 * 11 9 7 35 35 H 1.09003 * 109.47292 * 299.99852 * 12 11 9 36 36 H 1.09005 * 109.47136 * 60.00210 * 12 11 9 37 37 H 1.09003 * 109.46848 * 299.99998 * 13 12 11 38 38 H 1.09001 * 109.47487 * 59.99816 * 13 12 11 39 39 H 1.09003 * 109.46910 * 299.99588 * 14 13 12 40 40 H 1.08997 * 109.47329 * 60.00116 * 14 13 12 41 41 H 0.97004 * 119.99643 * 180.02562 * 18 17 15 42 42 H 1.08999 * 113.76797 * 221.05917 * 23 6 5 43 43 H 1.08996 * 113.76985 * 89.65856 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 2.0923 -2.2527 -1.1029 6 7 3.3941 -2.1739 -1.7935 7 6 4.1245 -3.0317 -2.5331 8 8 5.1937 -2.6822 -2.9885 9 6 3.6176 -4.4135 -2.7926 10 8 2.5488 -4.7632 -2.3369 11 7 4.3478 -5.2712 -3.5327 12 6 3.8511 -6.6259 -3.7865 13 6 4.8632 -7.3876 -4.6447 14 6 4.3442 -8.8022 -4.9104 15 6 5.3413 -9.5527 -5.7551 16 1 6.2538 -9.0689 -6.0713 17 6 5.0889 -10.8569 -6.1244 18 7 3.9777 -11.4457 -5.7398 19 14 6.3245 -11.7868 -7.1721 20 1 7.6235 -11.8617 -6.4564 21 1 5.8209 -13.1599 -7.4299 22 1 6.5112 -11.0780 -8.4637 23 6 3.5752 -0.7784 -1.3486 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6766 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.5535 -0.3824 -2.1639 32 1 2.1628 -2.5932 -0.0699 33 1 1.3237 -2.7750 -1.6727 34 1 5.2023 -4.9918 -3.8966 35 1 3.7145 -7.1464 -2.8386 36 1 2.8975 -6.5709 -4.3116 37 1 5.0002 -6.8673 -5.5927 38 1 5.8166 -7.4427 -4.1194 39 1 4.2069 -9.3227 -3.9626 40 1 3.3910 -8.7468 -5.4360 41 1 3.8002 -12.3634 -5.9993 42 1 3.9907 -0.1236 -2.1146 43 1 4.0814 -0.6858 -0.3878 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117269512.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:16 Heat of formation + Delta-G solvation = -61.380104 kcal Electronic energy + Delta-G solvation = -21451.296242 eV Core-core repulsion = 18110.967391 eV Total energy + Delta-G solvation = -3340.328851 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.99290 -39.47821 -37.95078 -35.67093 -34.99078 -33.32700 -31.23600 -29.65203 -27.94343 -27.15698 -26.21317 -24.59025 -23.10619 -21.73521 -20.73519 -20.23680 -19.36094 -17.82551 -17.06650 -16.38425 -16.33331 -15.61338 -15.43977 -15.06374 -14.69596 -14.44242 -14.41041 -13.86133 -13.63933 -13.36608 -13.15155 -12.90737 -12.56971 -12.39546 -12.30000 -11.89823 -11.82560 -11.78144 -11.60734 -11.18112 -11.04104 -10.89070 -10.83871 -10.74969 -10.62654 -9.89472 -9.69839 -9.32478 -9.14064 -9.08217 -8.93706 -8.37581 -6.02476 -4.05485 1.45868 2.14653 3.24966 3.32695 3.36490 3.37243 3.40278 3.86918 4.28438 4.38205 4.44816 4.51355 4.65656 4.84068 4.97245 5.04956 5.15253 5.21330 5.24792 5.27009 5.33349 5.43692 5.48109 5.51594 5.60461 5.68661 5.69706 5.74565 5.85031 5.97102 6.08470 6.29354 6.54573 6.72099 6.95506 7.18184 7.31027 7.61569 7.72826 7.73530 7.95792 8.09353 8.37145 9.00715 9.58698 11.08767 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.050417 B = 0.002328 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.236489 B =12026.429070 C =12495.214138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 C -0.149 4.149 4 C -0.122 4.122 5 C 0.115 3.885 6 N -0.623 5.623 7 C 0.528 3.472 8 O -0.524 6.524 9 C 0.504 3.496 10 O -0.523 6.523 11 N -0.693 5.693 12 C 0.115 3.885 13 C -0.123 4.123 14 C 0.025 3.975 15 C -0.523 4.523 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.113 3.887 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.411 0.589 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.020 0.980 40 H 0.020 0.980 41 H 0.262 0.738 42 H 0.085 0.915 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.648 25.402 12.414 28.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.106 4.106 3 C -0.206 4.206 4 C -0.141 4.141 5 C -0.007 4.007 6 N -0.359 5.359 7 C 0.313 3.687 8 O -0.400 6.400 9 C 0.283 3.717 10 O -0.400 6.400 11 N -0.345 5.345 12 C -0.007 4.007 13 C -0.161 4.161 14 C -0.013 4.013 15 C -0.562 4.562 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.722 3.278 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.009 4.009 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.122 0.878 32 H 0.107 0.893 33 H 0.114 0.886 34 H 0.246 0.754 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.071 0.929 42 H 0.103 0.897 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.813 24.983 12.337 28.464 hybrid contribution 1.101 -0.570 -0.741 1.444 sum -4.712 24.413 11.597 27.435 Atomic orbital electron populations 1.21832 0.94572 1.02211 1.01932 1.21094 0.96337 0.96329 0.96802 1.21843 1.01131 0.95595 1.02036 1.23342 0.95281 0.95405 1.00031 1.23404 0.84319 0.95080 0.97879 1.49720 1.22486 1.14193 1.49462 1.20077 0.83733 0.85593 0.79339 1.90758 1.21149 1.77395 1.50680 1.19934 0.85367 0.85793 0.80562 1.90726 1.21453 1.77687 1.50126 1.46076 1.23653 1.14048 1.50705 1.21832 0.98959 0.79135 1.00786 1.21929 0.97272 0.99033 0.97847 1.19026 0.96707 0.88371 0.97177 1.21166 1.05120 0.97485 1.32379 0.92623 1.25029 0.95481 0.97717 0.96257 1.69953 1.24470 1.13089 1.45795 0.86623 0.81472 0.78861 0.80827 1.20226 1.21276 1.20228 1.23341 0.96298 0.81149 1.00096 0.92515 0.92270 0.92528 0.90612 0.92479 0.92496 0.92468 0.87762 0.89250 0.88640 0.75369 0.91158 0.91135 0.92433 0.92435 0.96209 0.96201 0.92865 0.89698 0.89275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.19 37.16 0.34 -0.34 16 2 C -0.09 -0.41 2.68 -90.62 -0.24 -0.65 16 3 C -0.15 -0.62 9.00 37.16 0.33 -0.29 16 4 C -0.12 -0.76 3.31 -89.69 -0.30 -1.06 16 5 C 0.12 1.01 7.30 -2.98 -0.02 0.99 16 6 N -0.62 -7.12 3.61 -178.87 -0.65 -7.77 16 7 C 0.53 7.74 8.12 -11.58 -0.09 7.64 16 8 O -0.52 -8.68 17.21 5.50 0.09 -8.58 16 9 C 0.50 8.01 7.89 -11.58 -0.09 7.91 16 10 O -0.52 -9.12 15.08 5.50 0.08 -9.03 16 11 N -0.69 -10.92 5.55 -60.72 -0.34 -11.26 16 12 C 0.11 2.02 5.67 -4.04 -0.02 2.00 16 13 C -0.12 -2.43 5.27 -26.73 -0.14 -2.57 16 14 C 0.02 0.63 4.97 -27.89 -0.14 0.49 16 15 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 16 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 19 Si 0.89 21.62 29.54 -169.99 -5.02 16.59 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 C 0.11 0.89 7.46 -2.97 -0.02 0.86 16 24 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.08 0.35 7.94 -51.93 -0.41 -0.06 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.23 7.43 -51.93 -0.39 -0.16 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 0.69 7.96 -51.93 -0.41 0.28 16 33 H 0.10 0.95 7.41 -51.93 -0.38 0.56 16 34 H 0.41 5.97 7.94 -40.82 -0.32 5.65 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.09 0.58 8.06 -51.93 -0.42 0.16 16 LS Contribution 359.65 15.07 5.42 5.42 Total: -1.00 -32.62 359.65 -7.85 -40.47 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -7.38 Total: -1.32 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -0.81 Total: 1.53 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: -0.25 Total: -45.07 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: 0.18 Total: -17.62 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.62 -7.85 -40.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117269512.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.906 kcal (2) G-P(sol) polarization free energy of solvation -32.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds