Wall clock time and date at job start Tue Mar 31 2020 06:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47403 * 2 1 4 4 C 1.53004 * 109.47396 * 120.00364 * 2 1 3 5 5 N 1.46903 * 109.47079 * 239.99931 * 2 1 3 6 6 C 1.47480 * 110.99689 * 60.59649 * 5 2 1 7 7 C 1.53510 * 87.93397 * 138.70466 * 6 5 2 8 8 C 1.47481 * 111.00085 * 156.56128 * 5 2 1 9 9 H 1.09002 * 113.47902 * 336.07176 * 8 5 2 10 10 C 1.50702 * 113.47452 * 106.53332 * 8 5 2 11 11 O 1.21280 * 119.99928 * 0.02562 * 10 8 5 12 12 N 1.34776 * 120.00297 * 180.02562 * 10 8 5 13 13 C 1.47063 * 136.05293 * 359.63461 * 12 10 8 14 14 C 1.53749 * 87.88920 * 152.96076 * 13 12 10 15 15 O 1.42902 * 114.39444 * 272.67481 * 14 13 12 16 16 C 1.50707 * 114.27162 * 139.78855 * 14 13 12 17 17 H 1.07997 * 119.99778 * 266.48071 * 16 14 13 18 18 C 1.37873 * 120.00041 * 86.47144 * 16 14 13 19 19 N 1.31518 * 120.00148 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 119.99991 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46660 * 90.00489 * 20 18 16 22 22 H 1.48499 * 109.46979 * 210.00110 * 20 18 16 23 23 H 1.48493 * 109.47253 * 330.00225 * 20 18 16 24 24 C 1.47059 * 136.06109 * 180.02562 * 12 10 8 25 25 H 1.08999 * 109.47067 * 59.99411 * 1 2 3 26 26 H 1.09003 * 109.46569 * 299.99833 * 1 2 3 27 27 H 1.09001 * 109.47217 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47077 * 50.27946 * 3 2 1 29 29 H 1.09001 * 109.47208 * 170.28082 * 3 2 1 30 30 H 1.08995 * 109.47210 * 290.28008 * 3 2 1 31 31 H 1.09001 * 109.46968 * 59.99441 * 4 2 1 32 32 H 1.08996 * 109.47036 * 179.97438 * 4 2 1 33 33 H 1.08999 * 109.46653 * 299.99665 * 4 2 1 34 34 H 1.09007 * 113.47216 * 253.47038 * 6 5 2 35 35 H 1.09001 * 113.47879 * 23.93496 * 6 5 2 36 36 H 1.08999 * 114.17215 * 87.62224 * 7 6 5 37 37 H 1.08996 * 114.16804 * 220.13867 * 7 6 5 38 38 H 1.09003 * 113.46564 * 267.69014 * 13 12 10 39 39 H 1.09001 * 113.47184 * 38.12580 * 13 12 10 40 40 H 0.96703 * 113.99918 * 273.58283 * 15 14 13 41 41 H 0.96992 * 120.00215 * 179.97438 * 19 18 16 42 42 H 1.09001 * 113.46667 * 321.86336 * 24 12 10 43 43 H 1.08996 * 113.47012 * 92.24505 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 2.0196 -0.6925 -1.1995 6 6 1.5584 -0.0155 -2.4258 7 6 2.9572 -0.2485 -3.0139 8 6 3.3868 -0.2569 -1.5402 9 1 3.6362 0.7318 -1.1549 10 6 4.4407 -1.2878 -1.2280 11 8 4.1222 -2.3531 -0.7437 12 7 5.7372 -1.0260 -1.4869 13 6 6.4978 0.0979 -2.0536 14 6 7.7036 -0.3743 -1.2247 15 8 7.7512 0.1547 0.1020 16 6 9.0234 -0.2898 -1.9473 17 1 9.4031 -1.1489 -2.4803 18 6 9.7458 0.8844 -1.9282 19 7 9.2835 1.9305 -1.2789 20 14 11.3814 0.9893 -2.8245 21 1 11.1528 1.4434 -4.2198 22 1 12.2664 1.9570 -2.1278 23 1 12.0250 -0.3488 -2.8385 24 6 7.0131 -1.7410 -1.3334 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 1.5420 2.0040 0.7904 29 1 3.1162 1.4474 0.1735 30 1 1.8254 1.9038 -0.9639 31 1 1.6766 -1.7490 1.2492 32 1 3.1300 -0.7217 1.2489 33 1 1.6768 -0.2075 2.1392 34 1 0.7711 -0.5567 -2.9506 35 1 1.3199 1.0376 -2.2770 36 1 3.0751 -1.2074 -3.5186 37 1 3.3446 0.5917 -3.5901 38 1 6.6529 0.0182 -3.1296 39 1 6.1181 1.0744 -1.7531 40 1 8.1868 1.0156 0.1668 41 1 9.7920 2.7564 -1.2651 42 1 7.0725 -2.3314 -0.4190 43 1 7.3034 -2.3059 -2.2192 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119464242.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:46 Heat of formation + Delta-G solvation = 2.067605 kcal Electronic energy + Delta-G solvation = -23697.959160 eV Core-core repulsion = 20360.381608 eV Total energy + Delta-G solvation = -3337.577552 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.13958 -39.13745 -36.95310 -34.88810 -33.96997 -32.19751 -29.23952 -27.86126 -27.46701 -27.22124 -26.18650 -25.08139 -24.61936 -21.13031 -20.08474 -18.79416 -18.16992 -17.44920 -16.63264 -16.17740 -15.57373 -15.10022 -14.95079 -14.29913 -14.24586 -14.06478 -13.67557 -13.32615 -12.87600 -12.79488 -12.65144 -12.47588 -12.04786 -12.00395 -11.95116 -11.56521 -11.51335 -11.41351 -11.19357 -11.06340 -11.01212 -10.98939 -10.63477 -10.49409 -10.44710 -10.26329 -9.54689 -9.12296 -8.79847 -8.59923 -8.33173 -7.77437 -6.41360 -4.51497 3.13153 3.21337 3.23357 3.26918 3.45484 4.12426 4.19888 4.46753 4.73897 4.77183 4.82068 4.96220 5.01195 5.17035 5.22889 5.31840 5.49280 5.55674 5.61615 5.62471 5.68280 5.80319 5.86795 5.90888 5.96714 5.98738 5.99893 6.09565 6.15964 6.24746 6.39213 6.43299 6.52553 6.54780 6.68293 6.73448 7.11483 7.15336 7.62058 7.80662 8.51594 8.60571 8.92228 9.20103 9.48533 10.65254 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029146 B = 0.004321 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.449213 B = 6478.770876 C = 6503.959936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.065 3.935 3 C -0.187 4.187 4 C -0.129 4.129 5 N -0.431 5.431 6 C -0.007 4.007 7 C -0.129 4.129 8 C 0.004 3.996 9 H 0.110 0.890 10 C 0.547 3.453 11 O -0.543 6.543 12 N -0.636 5.636 13 C 0.073 3.927 14 C 0.240 3.760 15 O -0.571 6.571 16 C -0.533 4.533 17 H 0.072 0.928 18 C 0.072 3.928 19 N -0.899 5.899 20 Si 0.908 3.092 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.270 1.270 24 C 0.108 3.892 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.393 0.607 41 H 0.274 0.726 42 H 0.064 0.936 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.590 2.165 -1.903 12.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.025 4.025 3 C -0.245 4.245 4 C -0.186 4.186 5 N -0.154 5.154 6 C -0.136 4.136 7 C -0.167 4.167 8 C -0.109 4.109 9 H 0.127 0.873 10 C 0.335 3.665 11 O -0.421 6.421 12 N -0.371 5.371 13 C -0.050 4.050 14 C 0.198 3.802 15 O -0.384 6.384 16 C -0.571 4.571 17 H 0.091 0.909 18 C -0.130 4.130 19 N -0.540 5.540 20 Si 0.735 3.265 21 H -0.203 1.203 22 H -0.209 1.209 23 H -0.195 1.195 24 C -0.014 4.014 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.250 0.750 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.435 0.489 -1.229 13.500 hybrid contribution 1.254 1.697 -0.682 2.218 sum -12.181 2.186 -1.911 12.522 Atomic orbital electron populations 1.21822 0.93548 1.02456 1.01499 1.21565 0.95631 0.92159 0.93098 1.22607 1.02292 0.97162 1.02391 1.21681 1.01661 1.00555 0.94714 1.69114 1.01869 1.44017 1.00424 1.23816 0.97997 0.98896 0.92892 1.23069 0.95760 1.03450 0.94407 1.23582 0.91330 0.98708 0.97235 0.87297 1.19559 0.80727 0.87621 0.78562 1.90631 1.80403 1.25862 1.45195 1.49725 1.04140 1.21821 1.61379 1.24196 0.92132 0.89450 0.99229 1.19586 0.90870 0.88121 0.81609 1.86048 1.82550 1.42478 1.27348 1.21456 1.04348 0.98721 1.32561 0.90944 1.25069 0.98379 0.94986 0.94572 1.69261 1.39312 1.03015 1.42426 0.86318 0.82368 0.78313 0.79465 1.20289 1.20895 1.19497 1.23287 0.79779 0.97784 1.00592 0.92750 0.92208 0.91816 0.91661 0.91483 0.91970 0.91752 0.92436 0.92804 0.89514 0.90690 0.88734 0.89948 0.90244 0.92122 0.75047 0.91611 0.91727 0.89900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.37 37.16 0.31 -1.14 16 2 C 0.07 0.86 0.73 -131.60 -0.10 0.77 16 3 C -0.19 -2.23 7.09 37.16 0.26 -1.96 16 4 C -0.13 -1.90 8.67 37.16 0.32 -1.57 16 5 N -0.43 -6.51 5.57 -222.25 -1.24 -7.74 16 6 C -0.01 -0.09 6.27 -7.56 -0.05 -0.13 16 7 C -0.13 -1.72 8.00 -26.20 -0.21 -1.93 16 8 C 0.00 0.06 2.84 -72.60 -0.21 -0.15 16 9 H 0.11 1.73 4.93 -51.93 -0.26 1.47 16 10 C 0.55 11.40 7.47 -10.98 -0.08 11.32 16 11 O -0.54 -13.01 17.44 5.56 0.10 -12.92 16 12 N -0.64 -13.57 3.69 -185.08 -0.68 -14.26 16 13 C 0.07 1.55 7.86 -8.39 -0.07 1.48 16 14 C 0.24 5.73 1.58 -91.11 -0.14 5.59 16 15 O -0.57 -14.73 13.55 -35.23 -0.48 -15.21 16 16 C -0.53 -13.21 8.70 -34.44 -0.30 -13.51 16 17 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 18 C 0.07 1.77 5.39 -17.82 -0.10 1.67 16 19 N -0.90 -22.46 11.01 55.43 0.61 -21.85 16 20 Si 0.91 19.16 29.54 -169.99 -5.02 14.14 16 21 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 22 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 24 C 0.11 2.39 8.02 -8.51 -0.07 2.33 16 25 H 0.05 0.52 7.07 -51.93 -0.37 0.15 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 29 H 0.07 0.92 6.40 -51.93 -0.33 0.59 16 30 H 0.06 0.66 5.76 -51.93 -0.30 0.37 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 1.01 7.83 -51.93 -0.41 0.61 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.08 0.76 5.52 -51.93 -0.29 0.48 16 36 H 0.09 1.34 8.11 -51.93 -0.42 0.92 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.08 1.59 8.10 -51.93 -0.42 1.17 16 39 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.39 10.20 6.32 45.56 0.29 10.48 16 41 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 42 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 43 H 0.08 1.68 8.10 -51.93 -0.42 1.26 16 LS Contribution 340.63 15.07 5.13 5.13 Total: -1.00 -28.52 340.63 -8.27 -36.79 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -6.27 Total: 13.15 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -0.42 Total: 2.77 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: -1.31 Total: -43.86 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -0.38 Total: -28.13 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.02 Total: 14.14 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.52 -8.27 -36.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119464242.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.855 kcal (2) G-P(sol) polarization free energy of solvation -28.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds