Wall clock time and date at job start Tue Mar 31 2020 05:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50707 * 115.55062 * 2 1 4 4 O 1.21279 * 120.00144 * 214.33120 * 3 2 1 5 5 N 1.34772 * 119.99835 * 34.33330 * 3 2 1 6 6 C 1.46505 * 120.00019 * 179.97438 * 5 3 2 7 7 C 1.52995 * 109.46970 * 180.02562 * 6 5 3 8 8 H 1.08997 * 109.40965 * 305.16195 * 7 6 5 9 9 C 1.54668 * 109.34858 * 185.54695 * 7 6 5 10 10 N 1.48179 * 110.48877 * 200.71992 * 9 7 6 11 11 C 1.36941 * 118.51050 * 138.65975 * 10 9 7 12 12 H 1.07998 * 120.00034 * 206.47328 * 11 10 9 13 13 C 1.38814 * 119.99984 * 26.46872 * 11 10 9 14 14 N 1.31625 * 120.00019 * 16.69282 * 13 11 10 15 15 Si 1.86798 * 119.99880 * 196.69049 * 13 11 10 16 16 H 1.48492 * 109.47232 * 269.99962 * 15 13 11 17 17 H 1.48499 * 109.47187 * 30.00333 * 15 13 11 18 18 H 1.48505 * 109.46969 * 150.00095 * 15 13 11 19 19 C 1.44456 * 122.97747 * 318.37751 * 10 9 7 20 20 C 1.54882 * 109.32477 * 89.21440 * 19 10 9 21 21 C 1.47688 * 109.67840 * 290.10293 * 20 19 10 22 22 O 1.40531 * 109.40680 * 65.00015 * 7 6 5 23 23 C 1.52998 * 117.51902 * 145.70889 * 2 1 3 24 24 C 1.52994 * 60.00183 * 107.47879 * 23 2 1 25 25 H 1.09002 * 109.47278 * 85.57856 * 1 2 3 26 26 H 1.08995 * 109.47283 * 205.58075 * 1 2 3 27 27 H 1.08997 * 109.46963 * 325.58029 * 1 2 3 28 28 H 0.97001 * 119.99889 * 359.97438 * 5 3 2 29 29 H 1.08996 * 109.46489 * 60.00126 * 6 5 3 30 30 H 1.08997 * 109.47091 * 300.00103 * 6 5 3 31 31 H 1.09006 * 109.42489 * 80.41199 * 9 7 6 32 32 H 1.08994 * 109.24321 * 320.91446 * 9 7 6 33 33 H 0.96994 * 119.99827 * 179.97438 * 14 13 11 34 34 H 1.08996 * 109.50088 * 209.16997 * 19 10 9 35 35 H 1.08998 * 109.49625 * 329.23418 * 19 10 9 36 36 H 1.08991 * 109.43383 * 50.16387 * 20 19 10 37 37 H 1.09001 * 109.43589 * 170.04012 * 20 19 10 38 38 H 1.09000 * 108.64353 * 181.88067 * 21 20 19 39 39 H 1.09000 * 108.64697 * 299.71629 * 21 20 19 40 40 H 1.08999 * 117.49655 * 214.97038 * 23 2 1 41 41 H 1.09003 * 117.49945 * 359.97438 * 23 2 1 42 42 H 1.09001 * 117.50101 * 252.51031 * 24 23 2 43 43 H 1.09003 * 117.50109 * 107.49182 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3597 0.0000 4 8 3.2241 1.5327 -0.5923 5 7 1.6011 2.3833 0.6583 6 6 2.2332 3.7050 0.6588 7 6 1.3787 4.6786 1.4728 8 1 0.3610 4.6807 1.0827 9 6 1.9723 6.1021 1.3563 10 7 1.5077 6.9512 2.4783 11 6 2.4067 7.7935 3.0764 12 1 2.2661 8.0910 4.1050 13 6 3.4987 8.2647 2.3606 14 7 3.5086 8.1846 1.0468 15 14 4.9539 9.0126 3.2618 16 1 4.7410 10.4738 3.4190 17 1 5.0829 8.3842 4.6011 18 1 6.1949 8.7744 2.4817 19 6 0.1480 6.9351 2.9659 20 6 0.0126 5.8583 4.0709 21 6 0.1174 4.5132 3.4701 22 8 1.3623 4.2731 2.8182 23 6 2.2369 -1.1210 0.7645 24 6 2.2364 -1.1207 -0.7655 25 1 -0.3634 0.0792 -1.0246 26 1 -0.3633 -0.9269 0.4437 27 1 -0.3633 0.8477 0.5809 28 1 0.7659 2.2450 1.1318 29 1 2.3202 4.0664 -0.3658 30 1 3.2254 3.6330 1.1042 31 1 1.6583 6.5498 0.4133 32 1 3.0603 6.0407 1.3791 33 1 4.2715 8.5143 0.5466 34 1 -0.1024 7.9126 3.3780 35 1 -0.5301 6.7018 2.1451 36 1 0.8070 5.9904 4.8053 37 1 -0.9552 5.9619 4.5617 38 1 -0.0135 3.7694 4.2560 39 1 -0.6857 4.3927 2.7431 40 1 3.1721 -0.8751 1.2675 41 1 1.6120 -1.8587 1.2680 42 1 1.6112 -1.8582 -1.2688 43 1 3.1713 -0.8746 -1.2691 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149746387.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:02 Heat of formation + Delta-G solvation = -33.236451 kcal Electronic energy + Delta-G solvation = -23204.545788 eV Core-core repulsion = 19865.437338 eV Total energy + Delta-G solvation = -3339.108450 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.10885 -38.83436 -36.75278 -35.15008 -34.60997 -32.57249 -31.11790 -29.26875 -28.38003 -25.76602 -25.32091 -23.39386 -22.63941 -22.03580 -20.94737 -19.91814 -19.12527 -17.21577 -16.82690 -16.26265 -15.91558 -15.25484 -15.06679 -14.76567 -14.44937 -14.11335 -13.80689 -13.52972 -13.21868 -12.91332 -12.71546 -12.53795 -12.42843 -12.31988 -12.24084 -11.80821 -11.61888 -11.15564 -10.87079 -10.72990 -10.70676 -10.58301 -10.23410 -10.18084 -10.02355 -9.91716 -9.72580 -9.61079 -8.87871 -8.82976 -8.39639 -6.68778 -5.77897 -3.20442 2.59045 3.24197 3.40016 3.47569 3.50457 3.70741 4.27088 4.44969 4.52244 4.64125 4.69814 4.81306 5.13836 5.38460 5.39753 5.44407 5.44892 5.47827 5.53743 5.55856 5.62949 5.72211 5.75331 5.88609 5.89933 5.99279 6.01792 6.11127 6.22696 6.31591 6.37736 6.48288 6.65735 6.76471 6.97050 7.16822 7.55593 7.65645 7.82856 7.96467 8.36746 8.47099 9.22154 9.89045 10.33401 11.30210 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021334 B = 0.004428 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.148688 B = 6322.196996 C = 7128.602139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.167 4.167 3 C 0.545 3.455 4 O -0.543 6.543 5 N -0.716 5.716 6 C 0.124 3.876 7 C 0.056 3.944 8 H 0.047 0.953 9 C 0.166 3.834 10 N -0.585 5.585 11 C -0.257 4.257 12 H 0.064 0.936 13 C 0.006 3.994 14 N -0.905 5.905 15 Si 0.900 3.100 16 H -0.288 1.288 17 H -0.280 1.280 18 H -0.289 1.289 19 C 0.157 3.843 20 C -0.183 4.183 21 C 0.079 3.921 22 O -0.359 6.359 23 C -0.150 4.150 24 C -0.146 4.146 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.398 0.602 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.038 0.962 32 H 0.082 0.918 33 H 0.254 0.746 34 H 0.050 0.950 35 H 0.028 0.972 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.033 0.967 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.276 -15.961 -0.450 18.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.170 4.170 3 C 0.331 3.669 4 O -0.421 6.421 5 N -0.367 5.367 6 C 0.000 4.000 7 C -0.004 4.004 8 H 0.065 0.935 9 C 0.040 3.960 10 N -0.306 5.306 11 C -0.387 4.387 12 H 0.082 0.918 13 C -0.192 4.192 14 N -0.549 5.549 15 Si 0.730 3.270 16 H -0.215 1.215 17 H -0.205 1.205 18 H -0.215 1.215 19 C 0.029 3.971 20 C -0.224 4.224 21 C 0.002 3.998 22 O -0.277 6.277 23 C -0.187 4.187 24 C -0.183 4.183 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.233 0.767 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.056 0.944 32 H 0.100 0.900 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.046 0.954 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.052 0.948 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.240 -15.824 -0.921 17.865 hybrid contribution 0.140 0.554 0.650 0.865 sum -8.099 -15.271 -0.271 17.288 Atomic orbital electron populations 1.21341 0.90617 1.02524 1.02551 1.21506 0.95827 0.89854 1.09850 1.19440 0.84374 0.84710 0.78401 1.90698 1.23258 1.83895 1.44225 1.45950 1.27170 1.10307 1.53293 1.21598 0.97549 0.80498 1.00319 1.23218 0.98086 0.96711 0.82409 0.93509 1.21688 1.00136 0.83939 0.90218 1.43569 1.04790 1.43692 1.38556 1.19154 1.03775 1.21506 0.94230 0.91818 1.24998 1.00233 0.98920 0.95090 1.70031 1.30343 1.50001 1.04553 0.86335 0.82615 0.78848 0.79207 1.21456 1.20499 1.21509 1.20665 0.86925 0.96066 0.93444 1.22298 1.00792 0.97696 1.01627 1.21294 0.85363 0.97089 0.96050 1.87440 1.34793 1.81869 1.23636 1.23085 1.02176 0.98376 0.95108 1.23012 1.02707 0.98227 0.94359 0.91582 0.91540 0.91919 0.76696 0.90125 0.90486 0.94413 0.90014 0.93576 0.93140 0.95406 0.91114 0.92370 0.91573 0.94826 0.88281 0.87901 0.88095 0.87449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 9.79 37.16 0.36 -0.57 16 2 C -0.17 -1.85 2.61 -155.66 -0.41 -2.26 16 3 C 0.55 8.31 7.39 -10.98 -0.08 8.23 16 4 O -0.54 -10.44 16.26 5.56 0.09 -10.35 16 5 N -0.72 -10.44 5.39 -60.29 -0.33 -10.76 16 6 C 0.12 2.16 5.24 -4.04 -0.02 2.14 16 7 C 0.06 1.03 2.35 -25.86 -0.06 0.97 16 8 H 0.05 0.78 7.21 -51.93 -0.37 0.41 16 9 C 0.17 3.89 4.53 -2.24 -0.01 3.88 16 10 N -0.59 -14.41 2.58 -171.25 -0.44 -14.85 16 11 C -0.26 -7.05 9.42 -15.06 -0.14 -7.19 16 12 H 0.06 1.73 7.88 -52.49 -0.41 1.32 16 13 C 0.01 0.17 4.85 -17.43 -0.08 0.08 16 14 N -0.90 -26.12 11.09 55.49 0.62 -25.50 16 15 Si 0.90 22.03 29.59 -169.99 -5.03 17.00 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 C 0.16 3.20 5.68 -4.14 -0.02 3.17 16 20 C -0.18 -3.15 6.04 -28.31 -0.17 -3.32 16 21 C 0.08 1.24 6.04 34.59 0.21 1.45 16 22 O -0.36 -6.78 9.78 -34.10 -0.33 -7.11 16 23 C -0.15 -1.44 9.88 -26.74 -0.26 -1.71 16 24 C -0.15 -1.46 9.76 -26.73 -0.26 -1.72 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.43 7.90 -51.93 -0.41 0.02 16 27 H 0.06 0.49 6.38 -51.93 -0.33 0.16 16 28 H 0.40 4.88 6.76 -40.82 -0.28 4.60 16 29 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 30 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.04 0.94 8.02 -51.93 -0.42 0.52 16 32 H 0.08 2.17 6.30 -51.93 -0.33 1.85 16 33 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.05 1.04 7.97 -51.93 -0.41 0.63 16 35 H 0.03 0.53 8.10 -51.93 -0.42 0.11 16 36 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.03 0.47 7.28 -51.93 -0.38 0.09 16 40 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.10 0.75 8.05 -51.93 -0.42 0.33 16 42 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.11 1.26 7.67 -51.93 -0.40 0.86 16 LS Contribution 342.54 15.07 5.16 5.16 Total: -1.00 -31.91 342.54 -8.31 -40.22 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -7.09 Total: 3.02 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -0.95 Total: 3.17 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: -0.15 Total: -51.11 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.24 Total: -17.47 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.91 -8.31 -40.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149746387.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.987 kcal (2) G-P(sol) polarization free energy of solvation -31.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds