Wall clock time and date at job start Tue Mar 31 2020 05:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 115.54980 * 2 1 4 4 O 1.21279 * 119.99991 * 101.98654 * 3 2 1 5 5 N 1.34774 * 119.99827 * 281.98962 * 3 2 1 6 6 C 1.47506 * 118.76164 * 355.22829 * 5 3 2 7 7 C 1.53574 * 111.03070 * 221.63041 * 6 5 3 8 8 C 1.51540 * 109.57829 * 39.97648 * 7 6 5 9 9 O 1.42154 * 108.76278 * 268.59606 * 8 7 6 10 10 C 1.38021 * 119.42842 * 87.22412 * 9 8 7 11 11 H 1.08997 * 109.47412 * 56.58253 * 10 9 8 12 12 C 1.53005 * 109.46387 * 176.57181 * 10 9 8 13 13 N 1.46494 * 109.47450 * 300.00683 * 12 10 9 14 14 C 1.36942 * 120.00401 * 180.02562 * 13 12 10 15 15 H 1.08003 * 119.99888 * 359.97438 * 14 13 12 16 16 C 1.38810 * 120.00291 * 179.97438 * 14 13 12 17 17 N 1.31615 * 120.00044 * 179.71720 * 16 14 13 18 18 Si 1.86799 * 119.99777 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47462 * 89.99955 * 18 16 14 20 20 H 1.48508 * 109.46614 * 209.99672 * 18 16 14 21 21 H 1.48504 * 109.47312 * 329.99333 * 18 16 14 22 22 C 1.45124 * 118.75694 * 175.23366 * 5 3 2 23 23 C 1.53006 * 117.51965 * 145.70356 * 2 1 3 24 24 C 1.52999 * 60.00034 * 107.47824 * 23 2 1 25 25 H 1.08996 * 109.47239 * 62.77250 * 1 2 3 26 26 H 1.09007 * 109.46824 * 182.77439 * 1 2 3 27 27 H 1.09004 * 109.47356 * 302.76881 * 1 2 3 28 28 H 1.08993 * 109.16659 * 101.22979 * 6 5 3 29 29 H 1.09004 * 109.16467 * 342.02814 * 6 5 3 30 30 H 1.09000 * 109.45422 * 279.94575 * 7 6 5 31 31 H 1.08996 * 109.45469 * 160.00617 * 7 6 5 32 32 H 1.09002 * 109.58767 * 148.82317 * 8 7 6 33 33 H 1.08993 * 109.71358 * 28.45879 * 8 7 6 34 34 H 1.09006 * 109.47222 * 180.02562 * 12 10 9 35 35 H 1.09008 * 109.47412 * 60.00902 * 12 10 9 36 36 H 0.97003 * 119.99925 * 359.97438 * 13 12 10 37 37 H 0.96998 * 120.00286 * 179.97438 * 17 16 14 38 38 H 1.08997 * 109.45760 * 330.68262 * 22 5 3 39 39 H 1.09007 * 109.46085 * 210.72900 * 22 5 3 40 40 H 1.08995 * 117.49574 * 214.97260 * 23 2 1 41 41 H 1.08997 * 117.49242 * 359.97438 * 23 2 1 42 42 H 1.08996 * 117.50000 * 252.51390 * 24 23 2 43 43 H 1.09001 * 117.51339 * 107.47917 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1799 1.3596 0.0000 4 8 2.6383 1.8126 1.0274 5 7 2.2518 2.0721 -1.1417 6 6 1.7825 1.4529 -2.3956 7 6 2.7339 1.7725 -3.5579 8 6 4.1683 1.7037 -3.0737 9 8 4.5657 2.9966 -2.6363 10 6 4.3164 3.3781 -1.3336 11 1 4.7731 2.6612 -0.6513 12 6 4.9099 4.7665 -1.0865 13 7 6.3563 4.7273 -1.3158 14 6 7.1064 5.8615 -1.1537 15 1 6.6315 6.7851 -0.8572 16 6 8.4769 5.8241 -1.3704 17 7 9.1970 6.9155 -1.2200 18 14 9.2981 4.2268 -1.8839 19 1 9.3118 4.1313 -3.3657 20 1 10.6924 4.2006 -1.3733 21 1 8.5431 3.0787 -1.3208 22 6 2.7881 3.4197 -1.0912 23 6 2.2370 -1.1210 0.7646 24 6 2.2364 -1.1208 -0.7654 25 1 -0.3633 0.4702 -0.9138 26 1 -0.3633 -1.0265 0.0497 27 1 -0.3634 0.5562 0.8641 28 1 0.7885 1.8324 -2.6320 29 1 1.7298 0.3722 -2.2631 30 1 2.5251 2.7744 -3.9330 31 1 2.5858 1.0475 -4.3582 32 1 4.8142 1.3795 -3.8897 33 1 4.2434 0.9987 -2.2459 34 1 4.7135 5.0678 -0.0574 35 1 4.4533 5.4836 -1.7687 36 1 6.7829 3.8976 -1.5817 37 1 10.1548 6.8894 -1.3711 38 1 2.5874 3.8538 -0.1118 39 1 2.3146 4.0282 -1.8618 40 1 3.1721 -0.8750 1.2676 41 1 1.6120 -1.8585 1.2681 42 1 1.6111 -1.8582 -1.2686 43 1 3.1711 -0.8745 -1.2692 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200563464.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:00 Heat of formation + Delta-G solvation = -30.268767 kcal Electronic energy + Delta-G solvation = -23557.410767 eV Core-core repulsion = 20218.431005 eV Total energy + Delta-G solvation = -3338.979762 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.96166 -38.94855 -37.00534 -35.69952 -34.73056 -32.88068 -31.12825 -29.52206 -28.84790 -26.90343 -25.59532 -23.40369 -22.96039 -21.78864 -21.32664 -21.00632 -18.79471 -17.66303 -17.16026 -16.59539 -16.43914 -15.82996 -15.64007 -14.95562 -14.55343 -14.34340 -13.89040 -13.83104 -13.45107 -13.40869 -12.94932 -12.80022 -12.58157 -12.56210 -12.40921 -12.15584 -11.92789 -11.82923 -11.47656 -11.18554 -10.94924 -10.79632 -10.77569 -10.39981 -10.30507 -10.06457 -9.71788 -9.51672 -9.49943 -8.82218 -8.63491 -7.13153 -5.68571 -3.02657 2.42694 2.73171 3.30784 3.45723 3.50206 3.51841 3.83955 4.11463 4.29176 4.43425 4.55284 4.62554 4.68451 4.70174 4.89447 5.10764 5.18282 5.18628 5.25411 5.27031 5.34096 5.38578 5.43485 5.47518 5.53714 5.55152 5.61668 5.72375 5.73962 5.78254 5.83613 5.89930 5.99153 6.03694 6.45046 6.59853 6.71018 7.15797 7.86768 8.04235 8.08030 8.50648 9.30621 10.03218 10.24368 11.50036 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024857 B = 0.004393 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.152963 B = 6372.648324 C = 6448.367203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.159 4.159 3 C 0.542 3.458 4 O -0.527 6.527 5 N -0.605 5.605 6 C 0.101 3.899 7 C -0.167 4.167 8 C 0.072 3.928 9 O -0.371 6.371 10 C 0.085 3.915 11 H 0.051 0.949 12 C 0.171 3.829 13 N -0.750 5.750 14 C -0.241 4.241 15 H 0.090 0.910 16 C 0.004 3.996 17 N -0.936 5.936 18 Si 0.886 3.114 19 H -0.284 1.284 20 H -0.292 1.292 21 H -0.279 1.279 22 C 0.082 3.918 23 C -0.144 4.144 24 C -0.168 4.168 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.045 0.955 34 H 0.043 0.957 35 H 0.035 0.965 36 H 0.364 0.636 37 H 0.259 0.741 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.950 -18.891 -3.227 28.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.162 4.162 3 C 0.329 3.671 4 O -0.402 6.402 5 N -0.337 5.337 6 C -0.021 4.021 7 C -0.205 4.205 8 C -0.004 4.004 9 O -0.289 6.289 10 C 0.025 3.975 11 H 0.069 0.931 12 C 0.043 3.957 13 N -0.395 5.395 14 C -0.370 4.370 15 H 0.108 0.892 16 C -0.192 4.192 17 N -0.585 5.585 18 Si 0.717 3.283 19 H -0.210 1.210 20 H -0.219 1.219 21 H -0.205 1.205 22 C -0.042 4.042 23 C -0.181 4.181 24 C -0.205 4.205 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.109 0.891 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.197 0.803 37 H 0.069 0.931 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -20.573 -18.259 -2.761 27.645 hybrid contribution 0.475 -1.282 -0.294 1.399 sum -20.097 -19.541 -3.055 28.197 Atomic orbital electron populations 1.21243 0.89790 1.02681 1.02670 1.21423 0.96341 0.89409 1.09030 1.19682 0.78644 0.85548 0.83262 1.90739 1.46660 1.70548 1.32235 1.47878 1.62819 1.15294 1.07748 1.22111 0.97321 0.99111 0.83548 1.22501 0.96245 1.04042 0.97707 1.22134 0.94100 0.85440 0.98772 1.86420 1.81315 1.32230 1.28952 1.22325 0.92968 0.98503 0.83736 0.93142 1.20599 0.85567 0.91033 0.98508 1.42549 1.02321 1.10212 1.84438 1.19075 0.89830 0.89232 1.38902 0.89181 1.24632 0.96086 0.96665 1.01778 1.69703 1.06035 1.26487 1.56235 0.86504 0.78758 0.84461 0.78597 1.21032 1.21858 1.20495 1.22407 0.95203 0.82443 1.04133 1.23057 1.02556 0.98437 0.94082 1.23178 1.02313 0.99609 0.95414 0.91734 0.91375 0.91571 0.91633 0.89076 0.89854 0.89659 0.89337 0.93638 0.93939 0.94678 0.80281 0.93147 0.88839 0.89614 0.87983 0.87783 0.87631 0.88355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 9.66 37.16 0.36 -0.39 16 2 C -0.16 -1.49 1.39 -155.66 -0.22 -1.71 16 3 C 0.54 7.24 6.81 -10.99 -0.07 7.17 16 4 O -0.53 -9.37 16.45 5.56 0.09 -9.28 16 5 N -0.60 -7.27 2.19 -172.48 -0.38 -7.65 16 6 C 0.10 0.86 5.48 -3.19 -0.02 0.84 16 7 C -0.17 -1.50 5.79 -27.17 -0.16 -1.65 16 8 C 0.07 0.89 6.37 36.42 0.23 1.12 16 9 O -0.37 -6.31 9.18 -26.56 -0.24 -6.56 16 10 C 0.08 1.48 2.73 -25.78 -0.07 1.41 16 11 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 12 C 0.17 3.58 5.95 -4.04 -0.02 3.55 16 13 N -0.75 -19.32 5.29 -59.90 -0.32 -19.64 16 14 C -0.24 -7.18 10.47 -15.06 -0.16 -7.34 16 15 H 0.09 2.83 8.06 -52.48 -0.42 2.41 16 16 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 17 N -0.94 -30.42 13.97 55.49 0.78 -29.64 16 18 Si 0.89 23.37 27.74 -169.99 -4.71 18.65 16 19 H -0.28 -7.39 7.11 56.52 0.40 -6.99 16 20 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 21 H -0.28 -7.06 6.52 56.52 0.37 -6.69 16 22 C 0.08 1.15 4.83 -3.83 -0.02 1.13 16 23 C -0.14 -1.27 9.83 -26.73 -0.26 -1.53 16 24 C -0.17 -1.23 7.82 -26.73 -0.21 -1.44 16 25 H 0.06 0.39 7.68 -51.93 -0.40 0.00 16 26 H 0.07 0.36 8.11 -51.93 -0.42 -0.07 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.09 0.63 4.59 -51.93 -0.24 0.39 16 30 H 0.08 0.84 8.01 -51.93 -0.42 0.42 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.05 0.56 7.30 -51.93 -0.38 0.19 16 34 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.04 0.73 8.14 -51.92 -0.42 0.31 16 36 H 0.36 9.36 5.39 -40.82 -0.22 9.14 16 37 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16 38 H 0.09 1.41 7.35 -51.93 -0.38 1.03 16 39 H 0.09 1.08 8.11 -51.93 -0.42 0.66 16 40 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.10 0.80 7.94 -51.93 -0.41 0.38 16 LS Contribution 340.45 15.07 5.13 5.13 Total: -1.00 -35.87 340.45 -7.48 -43.34 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -7.11 Total: 4.46 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -0.71 Total: 1.18 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: 0.08 Total: -56.93 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.15 Total: -15.84 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -4.71 Total: 18.65 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -35.87 -7.48 -43.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200563464.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.074 kcal (2) G-P(sol) polarization free energy of solvation -35.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds