Wall clock time and date at job start Tue Mar 31 2020 05:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46672 * 2 1 4 4 C 1.52998 * 109.47232 * 239.99830 * 2 1 3 5 5 C 1.50699 * 109.46962 * 119.99501 * 2 1 3 6 6 C 1.32995 * 119.99894 * 0.02562 * 5 2 1 7 7 C 1.47102 * 119.99703 * 179.97438 * 6 5 2 8 8 O 1.21618 * 120.00277 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00144 * 179.97438 * 7 6 5 10 10 C 1.46497 * 120.00235 * 179.97438 * 9 7 6 11 11 H 1.09001 * 110.91837 * 37.44772 * 10 9 7 12 12 C 1.54909 * 111.00265 * 273.54647 * 10 9 7 13 13 N 1.47427 * 104.83321 * 204.91666 * 12 10 9 14 14 C 1.36941 * 125.64856 * 204.09350 * 13 12 10 15 15 H 1.07996 * 119.99797 * 354.80701 * 14 13 12 16 16 C 1.38814 * 119.99801 * 174.81218 * 14 13 12 17 17 N 1.31622 * 120.00025 * 7.05127 * 16 14 13 18 18 Si 1.86797 * 119.99980 * 187.05721 * 16 14 13 19 19 H 1.48496 * 109.47551 * 94.98082 * 18 16 14 20 20 H 1.48498 * 109.47148 * 214.98647 * 18 16 14 21 21 H 1.48502 * 109.47053 * 334.97956 * 18 16 14 22 22 C 1.47028 * 108.70299 * 24.12871 * 13 12 10 23 23 C 1.54327 * 107.26850 * 358.94021 * 22 13 12 24 24 H 1.08993 * 110.71870 * 219.44500 * 23 22 13 25 25 O 1.42896 * 110.86916 * 96.24345 * 23 22 13 26 26 H 1.08989 * 109.47786 * 300.00038 * 1 2 3 27 27 H 1.09001 * 109.47273 * 60.00919 * 1 2 3 28 28 H 1.09001 * 109.47105 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47368 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47261 * 299.99467 * 3 2 1 31 31 H 1.08995 * 109.47684 * 59.99770 * 3 2 1 32 32 H 1.08999 * 109.47168 * 299.99558 * 4 2 1 33 33 H 1.09001 * 109.47294 * 60.00170 * 4 2 1 34 34 H 1.08999 * 109.47106 * 179.97438 * 4 2 1 35 35 H 1.07994 * 120.00134 * 180.02562 * 5 2 1 36 36 H 1.07993 * 120.00475 * 359.97438 * 6 5 2 37 37 H 0.96999 * 119.99607 * 0.02562 * 9 7 6 38 38 H 1.09002 * 110.36961 * 323.75312 * 12 10 9 39 39 H 1.08995 * 110.37143 * 86.07567 * 12 10 9 40 40 H 0.96995 * 120.00030 * 180.02562 * 17 16 14 41 41 H 1.08995 * 109.88079 * 239.52533 * 22 13 12 42 42 H 1.08993 * 110.01336 * 118.43158 * 22 13 12 43 43 H 0.96696 * 114.00405 * 66.38993 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7103 1.2305 6 6 1.1680 -1.2161 2.1057 7 6 1.6584 -1.9099 3.3066 8 8 2.8541 -2.0215 3.4988 9 7 0.7826 -2.4221 4.1938 10 6 1.2709 -3.1135 5.3894 11 1 2.1631 -2.6269 5.7833 12 6 1.5393 -4.6104 5.0944 13 7 1.4152 -5.2809 6.4015 14 6 1.9960 -6.4723 6.7457 15 1 2.5365 -7.0433 6.0054 16 6 1.8900 -6.9459 8.0462 17 7 1.1180 -6.3242 8.9122 18 14 2.8432 -8.4656 8.5674 19 1 4.1234 -8.0549 9.1978 20 1 2.0385 -9.2443 9.5426 21 1 3.1253 -9.3057 7.3758 22 6 0.5638 -4.4589 7.2740 23 6 0.1626 -3.2032 6.4716 24 1 0.1733 -2.3189 7.1087 25 8 -1.1212 -3.3736 5.8677 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6768 -1.7489 -1.2491 33 1 1.6768 -0.2075 -2.1392 34 1 3.1300 -0.7209 -1.2494 35 1 3.0941 -0.8086 1.4017 36 1 0.1063 -1.1175 1.9348 37 1 -0.1711 -2.3334 4.0403 38 1 0.7971 -4.9987 4.3970 39 1 2.5440 -4.7439 4.6935 40 1 1.0443 -6.6550 9.8210 41 1 1.1188 -4.1675 8.1657 42 1 -0.3278 -5.0175 7.5587 43 1 -1.8489 -3.4352 6.5014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219377671.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:24 Heat of formation + Delta-G solvation = -52.416943 kcal Electronic energy + Delta-G solvation = -22405.259120 eV Core-core repulsion = 19065.318941 eV Total energy + Delta-G solvation = -3339.940179 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.68667 -38.27157 -37.48277 -34.82743 -33.85590 -31.89998 -31.29363 -28.47637 -27.62618 -27.51465 -27.06942 -24.69770 -23.31623 -20.63877 -20.27657 -19.77807 -18.33310 -17.56113 -16.90394 -16.73137 -15.48797 -15.00412 -14.83054 -14.62530 -14.45099 -14.27453 -13.92814 -13.78996 -13.11723 -12.69658 -12.64372 -12.57442 -12.38993 -12.20721 -12.20198 -11.95951 -11.32162 -11.28770 -11.20239 -10.94422 -10.92827 -10.84029 -10.49636 -10.39855 -10.10842 -9.81279 -9.62222 -9.45672 -9.29381 -8.64287 -8.56733 -6.85225 -5.74723 -3.06167 1.44557 3.40731 3.44854 3.47454 3.49880 3.55383 4.39411 4.51241 4.53047 4.62083 4.69839 5.01821 5.14129 5.24360 5.31731 5.34004 5.35723 5.41810 5.49056 5.54334 5.59157 5.59416 5.74630 5.75628 5.86178 5.90527 5.94951 6.01734 6.10134 6.25541 6.36103 6.41131 6.67750 6.72367 6.99724 7.34681 7.45861 7.74845 7.92210 8.08626 8.21453 8.57012 9.19311 9.79665 10.44922 11.38069 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031225 B = 0.003282 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.494899 B = 8528.145984 C = 9034.201329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.048 4.048 3 C -0.138 4.138 4 C -0.139 4.139 5 C -0.062 4.062 6 C -0.212 4.212 7 C 0.539 3.461 8 O -0.551 6.551 9 N -0.704 5.704 10 C 0.139 3.861 11 H 0.101 0.899 12 C 0.132 3.868 13 N -0.601 5.601 14 C -0.224 4.224 15 H 0.080 0.920 16 C -0.009 4.009 17 N -0.925 5.925 18 Si 0.913 3.087 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.280 1.280 22 C 0.154 3.846 23 C 0.068 3.932 24 H 0.060 0.940 25 O -0.567 6.567 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.406 0.594 38 H 0.025 0.975 39 H 0.045 0.955 40 H 0.252 0.748 41 H 0.057 0.943 42 H 0.051 0.949 43 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.387 15.018 -15.319 21.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.048 4.048 3 C -0.195 4.195 4 C -0.196 4.196 5 C -0.082 4.082 6 C -0.233 4.233 7 C 0.327 3.673 8 O -0.430 6.430 9 N -0.354 5.354 10 C 0.033 3.967 11 H 0.119 0.881 12 C 0.005 3.995 13 N -0.328 5.328 14 C -0.352 4.352 15 H 0.097 0.903 16 C -0.205 4.205 17 N -0.573 5.573 18 Si 0.744 3.256 19 H -0.216 1.216 20 H -0.218 1.218 21 H -0.206 1.206 22 C 0.028 3.972 23 C 0.008 3.992 24 H 0.078 0.922 25 O -0.374 6.374 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.242 0.758 38 H 0.043 0.957 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -3.178 14.800 -15.511 21.674 hybrid contribution -0.380 -0.877 0.933 1.336 sum -3.557 13.923 -14.578 20.470 Atomic orbital electron populations 1.22008 0.94090 1.02334 1.02087 1.19767 0.95976 0.95531 0.93517 1.21825 1.01399 0.94265 1.02040 1.21830 1.01415 1.00443 0.95906 1.23661 1.00387 0.91649 0.92531 1.22803 1.00878 1.03574 0.96047 1.18658 0.86260 0.78845 0.83546 1.90785 1.15815 1.59693 1.76723 1.45689 1.10189 1.56528 1.22978 1.22315 0.96037 0.94325 0.83976 0.88079 1.21835 0.98739 0.89305 0.89651 1.44294 1.57335 1.22270 1.08884 1.19106 1.26554 0.95243 0.94337 0.90255 1.24811 1.00049 0.99553 0.96062 1.69928 1.40881 1.41826 1.04663 0.86069 0.79421 0.81963 0.78190 1.21554 1.21785 1.20586 1.21859 0.95636 0.87647 0.92044 1.23496 0.82786 0.99036 0.93844 0.92166 1.86250 1.16386 1.96459 1.38257 0.92061 0.92314 0.91979 0.92230 0.92173 0.92333 0.92231 0.92176 0.92216 0.85634 0.85306 0.75817 0.95742 0.93677 0.93742 0.92514 0.93112 0.77326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 7.13 37.16 0.26 -0.80 16 2 C -0.05 -0.39 0.99 -155.66 -0.15 -0.54 16 3 C -0.14 -0.99 8.46 37.16 0.31 -0.67 16 4 C -0.14 -1.03 8.46 37.16 0.31 -0.72 16 5 C -0.06 -0.69 8.33 -36.13 -0.30 -0.99 16 6 C -0.21 -2.57 9.00 -37.81 -0.34 -2.91 16 7 C 0.54 8.83 7.76 -12.66 -0.10 8.73 16 8 O -0.55 -11.16 15.97 5.26 0.08 -11.07 16 9 N -0.70 -11.34 5.18 -52.91 -0.27 -11.62 16 10 C 0.14 2.69 3.20 -65.78 -0.21 2.48 16 11 H 0.10 2.08 7.73 -51.93 -0.40 1.68 16 12 C 0.13 3.02 6.92 -2.53 -0.02 3.00 16 13 N -0.60 -15.85 3.40 -170.07 -0.58 -16.42 16 14 C -0.22 -6.44 10.27 -15.06 -0.15 -6.59 16 15 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 16 C -0.01 -0.26 5.48 -17.43 -0.10 -0.35 16 17 N -0.93 -27.05 10.36 55.49 0.57 -26.47 16 18 Si 0.91 22.45 29.56 -169.99 -5.02 17.43 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 C 0.15 3.66 5.15 -3.06 -0.02 3.64 16 23 C 0.07 1.25 4.19 -24.89 -0.10 1.15 16 24 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 25 O -0.57 -9.13 12.14 -35.23 -0.43 -9.56 16 26 H 0.06 0.43 7.50 -51.94 -0.39 0.04 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.46 7.50 -51.93 -0.39 0.07 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.13 1.56 7.49 -52.49 -0.39 1.17 16 36 H 0.13 1.25 5.74 -52.49 -0.30 0.94 16 37 H 0.41 5.73 7.54 -40.82 -0.31 5.42 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.04 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.25 7.15 8.31 -40.82 -0.34 6.82 16 41 H 0.06 1.48 7.29 -51.93 -0.38 1.10 16 42 H 0.05 1.31 7.54 -51.93 -0.39 0.92 16 43 H 0.38 4.69 9.12 45.56 0.42 5.11 16 LS Contribution 348.27 15.07 5.25 5.25 Total: -1.00 -33.20 348.27 -7.31 -40.50 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -6.31 Total: 6.55 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -0.60 Total: 5.42 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: -0.28 Total: -54.52 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.34 Total: -20.63 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.20 -7.31 -40.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219377671.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.914 kcal (2) G-P(sol) polarization free energy of solvation -33.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds