Wall clock time and date at job start Tue Mar 31 2020 05:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46754 * 2 1 4 4 C 1.53001 * 109.46830 * 183.66816 * 3 2 1 5 5 C 1.50707 * 115.55018 * 294.85592 * 4 3 2 6 6 O 1.21284 * 119.99853 * 114.19119 * 5 4 3 7 7 N 1.34780 * 119.99821 * 294.18934 * 5 4 3 8 8 C 1.46497 * 119.99570 * 174.96067 * 7 5 4 9 9 H 1.09000 * 110.64077 * 34.30299 * 8 7 5 10 10 C 1.54319 * 110.72334 * 271.15919 * 8 7 5 11 11 N 1.47029 * 107.27081 * 219.44469 * 10 8 7 12 12 C 1.36939 * 125.64526 * 178.90361 * 11 10 8 13 13 H 1.07996 * 120.00210 * 0.02562 * 12 11 10 14 14 C 1.38811 * 119.99912 * 180.02562 * 12 11 10 15 15 N 1.31622 * 119.99577 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00218 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46947 * 89.99928 * 16 14 12 18 18 H 1.48492 * 109.47140 * 210.00223 * 16 14 12 19 19 H 1.48502 * 109.47075 * 330.00075 * 16 14 12 20 20 C 1.47423 * 108.70360 * 358.94211 * 11 10 8 21 21 C 1.55121 * 104.94190 * 24.00359 * 20 11 10 22 22 H 1.08998 * 111.16116 * 205.13412 * 21 20 11 23 23 O 1.42902 * 110.93932 * 81.21369 * 21 20 11 24 24 C 1.53001 * 117.50029 * 149.18691 * 4 3 2 25 25 C 1.53003 * 117.50159 * 80.52719 * 4 3 2 26 26 H 1.08999 * 109.46687 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46868 * 299.99974 * 1 2 3 28 28 H 1.08998 * 109.46875 * 59.99992 * 1 2 3 29 29 H 1.08997 * 109.47337 * 119.99756 * 2 1 3 30 30 H 1.09004 * 109.47282 * 240.00365 * 2 1 3 31 31 H 1.08999 * 109.47331 * 303.66274 * 3 2 1 32 32 H 1.09000 * 109.47478 * 63.67064 * 3 2 1 33 33 H 0.96998 * 120.00104 * 354.96728 * 7 5 4 34 34 H 1.08997 * 109.88207 * 338.86565 * 10 8 7 35 35 H 1.09001 * 109.88106 * 99.87668 * 10 8 7 36 36 H 0.97004 * 119.99418 * 179.97438 * 15 14 12 37 37 H 1.08995 * 110.36488 * 142.96658 * 20 11 10 38 38 H 1.08997 * 110.36569 * 265.28513 * 20 11 10 39 39 H 0.96698 * 113.99784 * 67.96040 * 23 21 20 40 40 H 1.09004 * 117.49969 * 0.02562 * 24 4 3 41 41 H 1.08998 * 117.49785 * 145.01614 * 24 4 3 42 42 H 1.08999 * 117.49686 * 214.97911 * 25 4 3 43 43 H 1.08997 * 117.49656 * 359.97438 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5672 1.4436 -0.0923 5 6 4.2900 0.8463 1.0875 6 8 4.9336 -0.1727 0.9519 7 7 4.2214 1.4446 2.2933 8 6 4.8309 0.8072 3.4630 9 1 5.7363 0.2704 3.1799 10 6 3.8275 -0.1407 4.1531 11 7 4.0106 0.0112 5.6040 12 6 3.2947 -0.6422 6.5715 13 1 2.5189 -1.3391 6.2911 14 6 3.5664 -0.4087 7.9126 15 7 4.5117 0.4411 8.2542 16 14 2.5905 -1.3005 9.2323 17 1 3.2697 -2.5764 9.5730 18 1 2.5027 -0.4473 10.4445 19 1 1.2232 -1.5867 8.7284 20 6 5.0917 0.9842 5.8448 21 6 5.1366 1.8574 4.5635 22 1 6.1240 2.2964 4.4210 23 8 4.1286 2.8696 4.5997 24 6 4.2312 2.6242 -0.8038 25 6 4.1915 1.2493 -1.4756 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.6240 1.9750 -0.8553 32 1 1.7313 1.9371 0.9210 33 1 3.7683 2.2972 2.3865 34 1 2.8092 0.1329 3.8772 35 1 4.0274 -1.1708 3.8579 36 1 4.7012 0.6045 9.1914 37 1 4.8623 1.5982 6.7156 38 1 6.0421 0.4687 5.9828 39 1 4.2769 3.5484 5.2722 40 1 3.5800 3.4004 -1.2058 41 1 5.1909 2.9686 -0.4188 42 1 5.1252 0.6898 -1.5322 43 1 3.5142 1.1203 -2.3198 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220310470.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:41 Heat of formation + Delta-G solvation = -43.462140 kcal Electronic energy + Delta-G solvation = -23236.039444 eV Core-core repulsion = 19896.487574 eV Total energy + Delta-G solvation = -3339.551869 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.13932 -38.23839 -36.74321 -34.72247 -33.96996 -33.76611 -31.62916 -28.64315 -27.64925 -26.94430 -24.67764 -23.07729 -22.68525 -21.49623 -20.57014 -19.89555 -19.19245 -17.33096 -16.79028 -16.62445 -15.50033 -15.34804 -15.09587 -14.74974 -14.40705 -14.12687 -13.71302 -13.40882 -13.24088 -12.98573 -12.76721 -12.48807 -12.29039 -11.77631 -11.74671 -11.66777 -11.34954 -11.31972 -11.07375 -10.85515 -10.77937 -10.61286 -10.44698 -10.35324 -10.10098 -9.96257 -9.83493 -9.52551 -9.20640 -8.69468 -8.62865 -6.84480 -5.69121 -3.08855 2.78439 3.33481 3.39936 3.44900 3.46809 3.63541 4.45082 4.48315 4.60287 4.69522 4.78808 4.95959 5.09899 5.18606 5.30389 5.36507 5.38787 5.47426 5.49779 5.62423 5.69839 5.72917 5.75844 5.81588 5.82923 5.94446 6.00110 6.06557 6.09277 6.20542 6.29376 6.31392 6.59314 6.70317 6.97899 7.26465 7.56766 7.72243 7.88985 8.12920 8.31806 8.52736 9.18543 9.79557 10.43065 11.36014 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021193 B = 0.004540 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.854367 B = 6165.317911 C = 6889.584568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.074 4.074 4 C -0.155 4.155 5 C 0.547 3.453 6 O -0.544 6.544 7 N -0.702 5.702 8 C 0.141 3.859 9 H 0.099 0.901 10 C 0.132 3.868 11 N -0.596 5.596 12 C -0.216 4.216 13 H 0.078 0.922 14 C -0.012 4.012 15 N -0.927 5.927 16 Si 0.916 3.084 17 H -0.289 1.289 18 H -0.290 1.290 19 H -0.281 1.281 20 C 0.127 3.873 21 C 0.067 3.933 22 H 0.058 0.942 23 O -0.561 6.561 24 C -0.161 4.161 25 C -0.146 4.146 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.408 0.592 34 H 0.029 0.971 35 H 0.026 0.974 36 H 0.252 0.748 37 H 0.116 0.884 38 H 0.022 0.978 39 H 0.379 0.621 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.248 7.146 -16.393 18.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.112 4.112 4 C -0.158 4.158 5 C 0.333 3.667 6 O -0.421 6.421 7 N -0.353 5.353 8 C 0.036 3.964 9 H 0.117 0.883 10 C 0.005 3.995 11 N -0.322 5.322 12 C -0.344 4.344 13 H 0.096 0.904 14 C -0.207 4.207 15 N -0.576 5.576 16 Si 0.747 3.253 17 H -0.216 1.216 18 H -0.217 1.217 19 H -0.207 1.207 20 C 0.002 3.998 21 C 0.007 3.993 22 H 0.076 0.924 23 O -0.367 6.367 24 C -0.199 4.199 25 C -0.183 4.183 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.244 0.756 34 H 0.047 0.953 35 H 0.044 0.956 36 H 0.063 0.937 37 H 0.133 0.867 38 H 0.039 0.961 39 H 0.226 0.774 40 H 0.120 0.880 41 H 0.115 0.885 42 H 0.120 0.880 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.070 6.017 -16.722 17.892 hybrid contribution -0.386 0.165 1.284 1.351 sum -2.456 6.183 -15.438 16.810 Atomic orbital electron populations 1.21760 0.95718 1.01724 1.01607 1.21485 0.95645 0.96285 1.02731 1.21109 0.89590 0.97772 1.02716 1.21519 0.95989 1.04891 0.93384 1.19498 0.80075 0.83915 0.83237 1.90683 1.42076 1.24668 1.84676 1.45769 1.57527 1.25004 1.06974 1.22150 0.97114 0.93812 0.83351 0.88269 1.21581 0.96183 0.95934 0.85784 1.44272 1.40113 1.48820 0.98988 1.19100 1.12205 1.17672 0.85443 0.90435 1.24749 0.99061 0.99978 0.96909 1.69725 1.33726 1.38456 1.15740 0.86037 0.79310 0.78713 0.81254 1.21625 1.21658 1.20698 1.22631 0.90857 0.91546 0.94786 1.23617 0.89406 0.88653 0.97642 0.92409 1.86240 1.50666 1.39292 1.60455 1.23092 1.02280 0.91542 1.02945 1.22965 1.02938 0.98814 0.93581 0.92707 0.92563 0.92993 0.91682 0.91828 0.91109 0.90929 0.75619 0.95284 0.95594 0.93748 0.86696 0.96061 0.77381 0.87967 0.88482 0.87981 0.88127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.91 37.16 0.37 -1.15 16 2 C -0.12 -1.45 5.75 -26.73 -0.15 -1.61 16 3 C -0.07 -0.79 5.09 -26.73 -0.14 -0.93 16 4 C -0.15 -1.86 1.90 -155.65 -0.30 -2.15 16 5 C 0.55 8.79 6.54 -10.98 -0.07 8.72 16 6 O -0.54 -10.75 16.36 5.55 0.09 -10.65 16 7 N -0.70 -11.30 5.08 -52.03 -0.26 -11.56 16 8 C 0.14 2.68 3.19 -66.10 -0.21 2.47 16 9 H 0.10 1.95 7.56 -51.93 -0.39 1.56 16 10 C 0.13 2.99 7.00 -3.06 -0.02 2.96 16 11 N -0.60 -15.46 3.40 -169.94 -0.58 -16.04 16 12 C -0.22 -6.10 10.27 -15.06 -0.15 -6.25 16 13 H 0.08 2.15 7.83 -52.49 -0.41 1.73 16 14 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 15 N -0.93 -26.53 10.09 55.49 0.56 -25.97 16 16 Si 0.92 22.16 29.55 -169.99 -5.02 17.14 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 C 0.13 3.00 5.63 -2.42 -0.01 2.99 16 21 C 0.07 1.24 4.31 -24.46 -0.11 1.13 16 22 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 23 O -0.56 -9.54 12.23 -35.23 -0.43 -9.97 16 24 C -0.16 -1.54 9.93 -26.69 -0.26 -1.80 16 25 C -0.15 -1.53 9.78 -26.69 -0.26 -1.79 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.94 7.82 -51.93 -0.41 0.54 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.41 6.02 7.58 -40.82 -0.31 5.71 16 34 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 37 H 0.12 2.98 5.87 -51.93 -0.30 2.67 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.38 5.17 9.12 45.56 0.42 5.59 16 40 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.10 1.20 8.00 -51.93 -0.42 0.78 16 43 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 350.57 15.07 5.28 5.28 Total: -1.00 -32.09 350.57 -8.23 -40.31 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -6.45 Total: 9.31 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -1.42 Total: 2.15 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: -0.28 Total: -53.57 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.34 Total: -20.62 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.09 -8.23 -40.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220310470.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.149 kcal (2) G-P(sol) polarization free energy of solvation -32.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds