Wall clock time and date at job start Tue Mar 31 2020 05:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38311 * 119.98029 * 2 1 4 4 C 1.38214 * 120.12031 * 180.02562 * 3 2 1 5 5 C 1.38229 * 120.09965 * 359.74271 * 4 3 2 6 6 C 1.38621 * 119.96353 * 0.53577 * 5 4 3 7 7 O 1.35956 * 120.05821 * 179.74643 * 6 5 4 8 8 C 1.42901 * 117.00229 * 4.86480 * 7 6 5 9 9 H 1.08994 * 109.47089 * 36.30516 * 8 7 6 10 10 C 1.50696 * 109.47052 * 276.30292 * 8 7 6 11 11 H 1.08003 * 120.00007 * 124.53722 * 10 8 7 12 12 C 1.37875 * 120.00352 * 304.52853 * 10 8 7 13 13 N 1.31518 * 120.00007 * 2.61629 * 12 10 8 14 14 Si 1.86799 * 120.00183 * 182.60638 * 12 10 8 15 15 H 1.48503 * 109.47023 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47010 * 120.00328 * 14 12 10 17 17 H 1.48496 * 109.47389 * 240.00354 * 14 12 10 18 18 C 1.53005 * 109.46969 * 156.30432 * 8 7 6 19 19 N 1.46902 * 109.46933 * 293.68430 * 18 8 7 20 20 C 1.46900 * 109.47320 * 63.32406 * 19 18 8 21 21 C 1.46901 * 109.47020 * 183.32214 * 19 18 8 22 22 C 1.46901 * 109.47047 * 303.32026 * 19 18 8 23 23 C 1.38286 * 119.98798 * 180.02562 * 2 1 3 24 24 F 1.35102 * 120.04599 * 359.97392 * 23 2 1 25 25 H 1.09005 * 109.47110 * 269.97370 * 1 2 3 26 26 H 1.09000 * 109.47332 * 29.97269 * 1 2 3 27 27 H 1.08999 * 109.47414 * 149.97795 * 1 2 3 28 28 H 1.07993 * 119.94109 * 0.02622 * 3 2 1 29 29 H 1.08001 * 119.95226 * 180.02562 * 4 3 2 30 30 H 1.07996 * 120.01740 * 180.25615 * 5 4 3 31 31 H 0.97005 * 119.99787 * 4.34782 * 13 12 10 32 32 H 1.09003 * 109.46907 * 53.68416 * 18 8 7 33 33 H 1.09002 * 109.46783 * 173.68428 * 18 8 7 34 34 H 1.09004 * 109.46680 * 50.09348 * 20 19 18 35 35 H 1.08991 * 109.47198 * 170.09131 * 20 19 18 36 36 H 1.08995 * 109.46857 * 290.09852 * 20 19 18 37 37 H 1.09005 * 109.46753 * 59.99645 * 21 19 18 38 38 H 1.08996 * 109.47456 * 179.97438 * 21 19 18 39 39 H 1.09005 * 109.47188 * 300.00681 * 21 19 18 40 40 H 1.09002 * 109.46868 * 60.00690 * 22 19 18 41 41 H 1.08997 * 109.47081 * 179.97438 * 22 19 18 42 42 H 1.08989 * 109.47378 * 300.00308 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1980 0.0000 4 6 3.5803 1.2014 -0.0005 5 6 4.2764 0.0072 0.0043 6 6 3.5876 -1.1957 -0.0015 7 8 4.2704 -2.3714 -0.0020 8 6 5.6929 -2.2956 0.1117 9 1 5.9608 -1.4777 0.7804 10 6 6.2931 -2.0495 -1.2485 11 1 6.9436 -1.2020 -1.4064 12 6 6.0119 -2.9064 -2.2915 13 7 5.1795 -3.9088 -2.1128 14 14 6.8131 -2.6434 -3.9583 15 1 7.7023 -1.4555 -3.8982 16 1 7.6126 -3.8420 -4.3178 17 1 5.7618 -2.4239 -4.9838 18 6 6.2303 -3.6125 0.6756 19 7 5.7655 -3.7785 2.0592 20 6 4.3000 -3.8784 2.0749 21 6 6.3458 -5.0028 2.6271 22 6 6.1861 -2.6205 2.8593 23 6 2.1982 -1.1977 -0.0005 24 9 1.5233 -2.3682 -0.0005 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3634 0.8902 -0.5134 27 1 -0.3634 -0.8898 -0.5142 28 1 1.6569 2.1325 0.0004 29 1 4.1172 2.1385 -0.0001 30 1 5.3563 0.0114 0.0081 31 1 4.7150 -4.0087 -1.2671 32 1 5.8682 -4.4423 0.0686 33 1 7.3200 -3.5975 0.6576 34 1 3.9788 -4.6228 1.3463 35 1 3.9668 -4.1757 3.0692 36 1 3.8672 -2.9109 1.8208 37 1 7.4333 -4.9286 2.6154 38 1 6.0014 -5.1258 3.6539 39 1 6.0339 -5.8620 2.0333 40 1 5.7554 -1.7121 2.4380 41 1 5.8409 -2.7435 3.8858 42 1 7.2734 -2.5464 2.8477 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228219511.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:37 Heat of formation + Delta-G solvation = 41.799030 kcal Electronic energy + Delta-G solvation = -24175.390529 eV Core-core repulsion = 20767.845728 eV Total energy + Delta-G solvation = -3407.544801 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.161 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.78147 -43.02428 -40.69535 -38.64059 -35.46127 -33.34464 -31.93502 -30.40644 -29.68154 -29.61176 -28.22799 -27.49784 -25.06949 -23.54291 -23.34579 -21.83362 -19.82406 -19.24613 -18.28731 -17.93276 -17.91348 -17.72533 -17.28233 -16.83644 -15.94211 -15.74801 -15.50835 -15.24196 -14.80473 -14.38304 -14.28709 -14.20802 -14.08958 -13.92774 -13.55299 -13.42916 -13.37681 -13.26196 -13.19647 -13.11675 -12.95727 -12.81574 -12.56231 -12.28957 -12.16873 -12.07588 -11.64835 -10.85453 -10.81161 -9.64883 -9.07602 -8.64674 -6.65272 0.16308 0.36354 0.81177 1.48891 1.57678 1.65999 2.13505 2.38937 2.62416 2.68749 2.89220 2.96618 3.14388 3.34802 3.69428 3.78053 3.87039 3.98981 4.04473 4.11180 4.14541 4.18533 4.21707 4.32768 4.34276 4.40036 4.44079 4.50400 4.63151 4.69961 4.70180 4.74239 4.77782 4.81298 5.00237 5.18588 5.21264 5.37176 5.49260 5.51666 5.76089 6.01859 6.44412 6.53722 7.18082 8.68881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.092 4.092 3 C -0.143 4.143 4 C -0.086 4.086 5 C -0.187 4.187 6 C 0.114 3.886 7 O -0.323 6.323 8 C 0.168 3.832 9 H 0.084 0.916 10 C -0.633 4.633 11 H 0.061 0.939 12 C 0.022 3.978 13 N -0.908 5.908 14 Si 1.079 2.921 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.306 1.306 18 C 0.014 3.986 19 N -0.258 5.258 20 C -0.042 4.042 21 C -0.045 4.045 22 C -0.052 4.052 23 C 0.019 3.981 24 F -0.150 7.150 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.057 0.943 28 H 0.153 0.847 29 H 0.152 0.848 30 H 0.145 0.855 31 H 0.286 0.714 32 H 0.107 0.893 33 H 0.152 0.848 34 H 0.096 0.904 35 H 0.145 0.855 36 H 0.101 0.899 37 H 0.131 0.869 38 H 0.145 0.855 39 H 0.108 0.892 40 H 0.096 0.904 41 H 0.147 0.853 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.164 -0.284 19.769 20.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 C -0.161 4.161 4 C -0.104 4.104 5 C -0.205 4.205 6 C 0.067 3.933 7 O -0.238 6.238 8 C 0.114 3.886 9 H 0.102 0.898 10 C -0.670 4.670 11 H 0.079 0.921 12 C -0.186 4.186 13 N -0.545 5.545 14 Si 0.907 3.093 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.233 1.233 18 C -0.107 4.107 19 N 0.085 4.915 20 C -0.183 4.183 21 C -0.185 4.185 22 C -0.193 4.193 23 C 0.000 4.000 24 F -0.129 7.129 25 H 0.107 0.893 26 H 0.107 0.893 27 H 0.076 0.924 28 H 0.171 0.829 29 H 0.169 0.831 30 H 0.162 0.838 31 H 0.100 0.900 32 H 0.125 0.875 33 H 0.169 0.831 34 H 0.114 0.886 35 H 0.163 0.837 36 H 0.119 0.881 37 H 0.150 0.850 38 H 0.163 0.837 39 H 0.126 0.874 40 H 0.115 0.885 41 H 0.165 0.835 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.222 -1.197 18.275 18.595 hybrid contribution -0.295 0.412 0.408 0.651 sum 2.927 -0.785 18.682 18.927 Atomic orbital electron populations 1.20784 0.88905 1.03623 1.03721 1.20075 0.97855 0.91256 1.00126 1.21113 0.94370 0.97355 1.03244 1.21367 0.94256 0.98432 0.96383 1.21357 1.01302 0.91136 1.06736 1.18941 0.89565 0.87347 0.97454 1.86190 1.23348 1.27413 1.86858 1.20727 0.76273 0.94285 0.97329 0.89833 1.22377 1.33574 1.15412 0.95671 0.92113 1.26152 0.95145 0.92457 1.04835 1.70888 1.24397 1.29917 1.29292 0.83333 0.75611 0.76738 0.73644 1.19749 1.20761 1.23320 1.24220 1.04614 1.02333 0.79545 1.46007 1.14901 1.16413 1.14223 1.24245 0.77219 1.08343 1.08541 1.24288 1.04565 0.85208 1.04470 1.24311 1.07228 0.88347 0.99401 1.17207 0.87510 0.81859 1.13444 1.91410 1.80167 1.46488 1.94792 0.89275 0.89313 0.92405 0.82933 0.83055 0.83769 0.90032 0.87481 0.83074 0.88558 0.83679 0.88089 0.85036 0.83706 0.87372 0.88534 0.83490 0.84549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.24 9.83 71.24 0.70 0.46 16 2 C -0.09 -0.57 5.88 -19.84 -0.12 -0.68 16 3 C -0.14 -0.40 9.70 22.28 0.22 -0.18 16 4 C -0.09 -0.23 10.04 22.26 0.22 0.00 16 5 C -0.19 -1.05 8.69 22.36 0.19 -0.85 16 6 C 0.11 0.99 6.08 22.53 0.14 1.13 16 7 O -0.32 -2.33 4.71 -93.05 -0.44 -2.77 16 8 C 0.17 0.40 1.36 29.85 0.04 0.44 16 9 H 0.08 -0.30 4.11 -2.39 -0.01 -0.31 16 10 C -0.63 -9.71 7.89 25.60 0.20 -9.51 16 11 H 0.06 1.06 7.81 -2.91 -0.02 1.03 16 12 C 0.02 0.49 5.24 84.65 0.44 0.94 16 13 N -0.91 -22.61 12.89 21.45 0.28 -22.34 16 14 Si 1.08 22.25 29.90 68.60 2.05 24.30 16 15 H -0.27 -5.04 7.11 99.48 0.71 -4.33 16 16 H -0.28 -5.84 7.11 99.48 0.71 -5.13 16 17 H -0.31 -7.58 7.11 99.48 0.71 -6.87 16 18 C 0.01 -0.12 3.50 86.30 0.30 0.19 16 19 N -0.26 5.40 0.05 ******* -0.07 5.33 16 20 C -0.04 0.69 7.10 127.69 0.91 1.60 16 21 C -0.05 1.24 8.00 127.69 1.02 2.26 16 22 C -0.05 1.32 7.57 127.69 0.97 2.28 16 23 C 0.02 0.20 7.25 22.45 0.16 0.36 16 24 F -0.15 -1.95 16.32 44.97 0.73 -1.21 16 25 H 0.09 -0.10 8.14 -2.38 -0.02 -0.12 16 26 H 0.09 -0.08 8.09 -2.39 -0.02 -0.10 16 27 H 0.06 0.28 7.64 -2.39 -0.02 0.27 16 28 H 0.15 -0.36 8.06 -2.91 -0.02 -0.39 16 29 H 0.15 -0.39 8.06 -2.91 -0.02 -0.41 16 30 H 0.14 0.63 5.67 -2.91 -0.02 0.61 16 31 H 0.29 5.89 4.72 -92.70 -0.44 5.45 16 32 H 0.11 -0.09 5.90 -2.39 -0.01 -0.10 16 33 H 0.15 -1.77 8.11 -2.39 -0.02 -1.79 16 34 H 0.10 -1.08 7.95 -2.39 -0.02 -1.10 16 35 H 0.15 -3.59 7.99 -2.39 -0.02 -3.61 16 36 H 0.10 -1.00 5.21 -2.39 -0.01 -1.01 16 37 H 0.13 -3.92 8.13 -2.38 -0.02 -3.94 16 38 H 0.14 -4.77 8.07 -2.39 -0.02 -4.79 16 39 H 0.11 -2.66 8.14 -2.38 -0.02 -2.68 16 40 H 0.10 -1.93 5.88 -2.39 -0.01 -1.94 16 41 H 0.15 -4.58 8.14 -2.39 -0.02 -4.60 16 42 H 0.14 -3.86 8.14 -2.39 -0.02 -3.88 16 Total: 0.00 -47.28 327.26 9.29 -37.99 By element: Atomic # 1 Polarization: -41.06 SS G_CDS: 1.34 Total: -39.73 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: 5.40 Total: -1.57 kcal Atomic # 7 Polarization: -17.22 SS G_CDS: 0.21 Total: -17.01 kcal Atomic # 8 Polarization: -2.33 SS G_CDS: -0.44 Total: -2.77 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.73 Total: -1.21 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: 2.05 Total: 24.30 kcal Total: -47.28 9.29 -37.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228219511.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.786 kcal (2) G-P(sol) polarization free energy of solvation -47.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds