Wall clock time and date at job start Tue Mar 31 2020 05:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 110.05842 * 2 1 4 4 C 1.54266 * 110.02945 * 238.58626 * 2 1 3 5 5 C 1.54898 * 104.19500 * 217.10653 * 4 2 1 6 6 C 1.54889 * 102.74464 * 37.94145 * 5 4 2 7 7 C 1.53876 * 110.03250 * 121.41895 * 2 1 3 8 8 H 1.08995 * 110.07277 * 238.59430 * 7 2 1 9 9 N 1.46498 * 110.03151 * 0.02562 * 7 2 1 10 10 C 1.34778 * 120.00268 * 203.62320 * 9 7 2 11 11 O 1.21353 * 119.99414 * 359.97438 * 10 9 7 12 12 C 1.49448 * 120.00712 * 179.97438 * 10 9 7 13 13 O 1.21353 * 119.99400 * 359.97438 * 12 10 9 14 14 N 1.34770 * 120.00494 * 179.97438 * 12 10 9 15 15 C 1.46493 * 120.00393 * 179.97438 * 14 12 10 16 16 C 1.52996 * 109.47400 * 179.97438 * 15 14 12 17 17 C 1.50702 * 109.47159 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 16 15 20 20 N 1.31514 * 119.99985 * 180.27663 * 19 17 16 21 21 Si 1.86800 * 119.99777 * 0.28166 * 19 17 16 22 22 H 1.48498 * 109.47109 * 89.99834 * 21 19 17 23 23 H 1.48507 * 109.46754 * 209.99574 * 21 19 17 24 24 H 1.48498 * 109.47278 * 329.99405 * 21 19 17 25 25 H 1.08995 * 109.46781 * 298.58333 * 1 2 3 26 26 H 1.09003 * 109.46818 * 58.57870 * 1 2 3 27 27 H 1.08994 * 109.46894 * 178.58248 * 1 2 3 28 28 H 1.08993 * 109.47241 * 181.41804 * 3 2 1 29 29 H 1.08997 * 109.47045 * 301.41952 * 3 2 1 30 30 H 1.09004 * 109.46620 * 61.41352 * 3 2 1 31 31 H 1.08999 * 110.48794 * 98.42989 * 4 2 1 32 32 H 1.09005 * 110.48589 * 335.77885 * 4 2 1 33 33 H 1.08996 * 110.75276 * 279.63177 * 5 4 2 34 34 H 1.08997 * 110.75489 * 156.25191 * 5 4 2 35 35 H 1.09009 * 110.48528 * 203.37765 * 6 5 4 36 36 H 1.09004 * 110.49075 * 80.74149 * 6 5 4 37 37 H 0.97000 * 120.00382 * 23.61649 * 9 7 2 38 38 H 0.97000 * 119.99567 * 359.97438 * 14 12 10 39 39 H 1.09004 * 109.46794 * 59.99777 * 15 14 12 40 40 H 1.09000 * 109.47559 * 300.00254 * 15 14 12 41 41 H 1.09004 * 109.47066 * 60.00265 * 16 15 14 42 42 H 1.08994 * 109.47405 * 300.00096 * 16 15 14 43 43 H 0.96996 * 119.99730 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0548 1.4372 0.0000 4 6 2.0584 -0.7554 -1.2369 5 6 3.3137 -1.5008 -0.7192 6 6 2.8874 -1.9407 0.7034 7 6 2.0572 -0.7536 1.2337 8 1 2.6865 -0.0959 1.8332 9 7 0.9360 -1.2457 2.0380 10 6 1.1083 -1.4994 3.3505 11 8 2.1924 -1.3207 3.8657 12 6 -0.0355 -2.0009 4.1712 13 8 -1.1197 -2.1791 3.6560 14 7 0.1369 -2.2551 5.4834 15 6 -0.9844 -2.7461 6.2881 16 6 -0.5240 -2.9527 7.7324 17 6 -1.6774 -3.4584 8.5600 18 1 -2.6424 -3.6170 8.1015 19 6 -1.4993 -3.7245 9.9011 20 7 -2.5045 -4.1710 10.6221 21 14 0.1698 -3.4508 10.6939 22 1 0.2493 -2.0619 11.2134 23 1 0.3489 -4.4092 11.8140 24 1 1.2382 -3.6637 9.6846 25 1 -0.3633 0.4917 0.9024 26 1 -0.3633 0.5358 -0.8770 27 1 -0.3633 -1.0273 -0.0254 28 1 3.1444 1.4262 -0.0254 29 1 1.6762 1.9622 -0.8770 30 1 1.7175 1.9471 0.9024 31 1 2.3297 -0.0536 -2.0255 32 1 1.3142 -1.4660 -1.5967 33 1 4.1710 -0.8291 -0.6752 34 1 3.5324 -2.3679 -1.3423 35 1 3.7638 -2.1039 1.3309 36 1 2.2771 -2.8427 0.6571 37 1 0.0695 -1.3888 1.6262 38 1 1.0037 -2.1130 5.8951 39 1 -1.3367 -3.6936 5.8803 40 1 -1.7946 -2.0172 6.2654 41 1 -0.1714 -2.0053 8.1404 42 1 0.2859 -3.6818 7.7548 43 1 -2.3792 -4.3578 11.5656 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259886069.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:49 Heat of formation + Delta-G solvation = -90.894486 kcal Electronic energy + Delta-G solvation = -22240.144470 eV Core-core repulsion = 18898.535780 eV Total energy + Delta-G solvation = -3341.608690 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.87531 -39.47928 -37.97249 -35.35007 -33.91350 -32.78705 -32.62133 -30.28636 -28.42213 -27.75756 -25.86525 -24.82361 -23.18912 -21.16855 -20.86529 -20.15212 -19.35101 -18.06812 -17.07493 -16.69397 -15.92845 -15.80000 -15.53718 -15.00711 -14.78417 -14.22191 -14.18076 -13.87007 -13.76278 -13.39864 -13.12586 -13.06358 -12.61754 -12.60109 -12.35776 -11.88312 -11.57146 -11.46975 -11.42931 -11.25605 -11.24125 -10.96312 -10.93012 -10.83543 -10.44329 -10.29851 -9.95840 -9.45077 -9.31583 -9.27845 -8.76717 -8.61309 -6.12564 -4.13250 1.57069 2.51503 3.26593 3.34539 3.36569 3.37723 3.82336 4.03566 4.19106 4.37709 4.40591 4.67799 4.86449 4.91860 4.93058 4.95838 5.14017 5.20602 5.27521 5.30429 5.38906 5.48783 5.54718 5.56949 5.66206 5.74364 5.84341 5.88541 5.95916 5.97289 5.99427 6.10517 6.24113 6.47394 6.52111 6.97984 7.12701 7.18620 7.59305 7.62621 7.89125 8.22701 8.41752 8.90755 9.47447 11.00231 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036827 B = 0.002950 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.131800 B = 9488.001163 C = 9796.747426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.076 4.076 3 C -0.138 4.138 4 C -0.115 4.115 5 C -0.123 4.123 6 C -0.137 4.137 7 C 0.146 3.854 8 H 0.096 0.904 9 N -0.700 5.700 10 C 0.506 3.494 11 O -0.523 6.523 12 C 0.498 3.502 13 O -0.530 6.530 14 N -0.691 5.691 15 C 0.127 3.873 16 C -0.024 4.024 17 C -0.524 4.524 18 H 0.077 0.923 19 C 0.070 3.930 20 N -0.898 5.898 21 Si 0.881 3.119 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.265 1.265 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.414 0.586 38 H 0.409 0.591 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.020 0.980 42 H 0.025 0.975 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.393 8.884 -24.652 28.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.077 4.077 3 C -0.196 4.196 4 C -0.153 4.153 5 C -0.161 4.161 6 C -0.175 4.175 7 C 0.041 3.959 8 H 0.114 0.886 9 N -0.357 5.357 10 C 0.287 3.713 11 O -0.398 6.398 12 C 0.277 3.723 13 O -0.408 6.408 14 N -0.342 5.342 15 C 0.005 3.995 16 C -0.061 4.061 17 C -0.562 4.562 18 H 0.095 0.905 19 C -0.132 4.132 20 N -0.536 5.536 21 Si 0.708 3.292 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.189 1.189 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.254 0.746 38 H 0.244 0.756 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.038 0.962 42 H 0.043 0.957 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.307 8.817 -24.425 28.323 hybrid contribution 0.779 0.063 0.650 1.016 sum 12.086 8.880 -23.775 28.110 Atomic orbital electron populations 1.21943 0.94034 1.02055 1.02730 1.21425 0.96118 0.95874 0.94259 1.21898 1.01120 0.94391 1.02173 1.22505 0.97466 0.98882 0.96423 1.22455 0.97715 1.00091 0.95825 1.22816 1.00176 0.98082 0.96442 1.21824 0.87329 0.95463 0.91252 0.88647 1.46215 1.15436 1.65633 1.08407 1.20465 0.88875 0.78635 0.83296 1.90740 1.26493 1.50714 1.71853 1.20014 0.88296 0.80189 0.83791 1.90740 1.26259 1.52103 1.71688 1.46203 1.16387 1.63495 1.08098 1.21709 0.87059 0.99049 0.91639 1.19823 0.98429 0.97197 0.90688 1.20882 0.96873 1.44695 0.93799 0.90539 1.24988 0.96758 0.94304 0.97140 1.69899 1.31118 1.44891 1.07667 0.86765 0.84843 0.78328 0.79266 1.20146 1.21230 1.18941 0.91746 0.91770 0.92070 0.92227 0.92168 0.92342 0.91168 0.91156 0.91222 0.91206 0.90801 0.90918 0.74599 0.75583 0.91267 0.91279 0.96154 0.95723 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 7.04 37.16 0.26 -0.81 16 2 C -0.08 -0.54 0.94 -153.39 -0.14 -0.69 16 3 C -0.14 -0.90 8.15 37.16 0.30 -0.59 16 4 C -0.12 -0.70 5.90 -25.07 -0.15 -0.85 16 5 C -0.12 -0.80 6.91 -24.73 -0.17 -0.97 16 6 C -0.14 -1.19 6.52 -25.07 -0.16 -1.36 16 7 C 0.15 1.38 2.86 -66.81 -0.19 1.19 16 8 H 0.10 1.02 7.14 -51.93 -0.37 0.65 16 9 N -0.70 -7.97 4.50 -53.15 -0.24 -8.21 16 10 C 0.51 7.37 7.88 -11.59 -0.09 7.28 16 11 O -0.52 -8.49 16.16 5.49 0.09 -8.40 16 12 C 0.50 8.32 7.89 -11.59 -0.09 8.23 16 13 O -0.53 -9.82 16.48 5.49 0.09 -9.73 16 14 N -0.69 -12.01 5.55 -60.74 -0.34 -12.35 16 15 C 0.13 2.56 5.61 -4.05 -0.02 2.54 16 16 C -0.02 -0.54 4.15 -27.88 -0.12 -0.66 16 17 C -0.52 -14.59 9.66 -34.44 -0.33 -14.92 16 18 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 19 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 20 N -0.90 -27.24 13.96 55.43 0.77 -26.47 16 21 Si 0.88 21.19 27.47 -169.99 -4.67 16.52 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.26 -6.07 6.54 56.52 0.37 -5.70 16 25 H 0.06 0.52 7.71 -51.93 -0.40 0.12 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.43 6.92 -51.93 -0.36 0.08 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.36 7.84 -51.93 -0.41 -0.04 16 32 H 0.07 0.42 7.84 -51.93 -0.41 0.02 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.71 8.14 -51.92 -0.42 0.28 16 36 H 0.07 0.68 8.05 -51.93 -0.42 0.26 16 37 H 0.41 4.40 5.24 -40.82 -0.21 4.18 16 38 H 0.41 6.61 7.94 -40.82 -0.32 6.28 16 39 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 40 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.02 0.45 7.58 -51.93 -0.39 0.06 16 42 H 0.02 0.56 7.19 -51.93 -0.37 0.18 16 43 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 346.86 15.07 5.23 5.23 Total: -1.00 -31.34 346.86 -7.13 -38.47 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -7.06 Total: 4.63 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -1.00 Total: 0.30 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: 0.20 Total: -47.02 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: 0.18 Total: -18.13 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.34 -7.13 -38.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259886069.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.422 kcal (2) G-P(sol) polarization free energy of solvation -31.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds